Wall clock time and date at job start Tue Mar 31 2020 15:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99901 * 2 1 4 4 H 1.48502 * 109.47050 * 239.99350 * 3 2 1 5 5 H 1.48492 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47045 * 119.99786 * 3 2 1 7 7 C 1.37879 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47661 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47841 * 180.02562 * 10 9 7 12 12 S 1.65591 * 120.00433 * 163.16974 * 11 10 9 13 13 O 1.42099 * 106.40490 * 177.09320 * 12 11 10 14 14 O 1.42102 * 106.40489 * 310.01529 * 12 11 10 15 15 C 1.76203 * 107.21883 * 63.55419 * 12 11 10 16 16 C 1.34224 * 126.57086 * 244.09018 * 15 12 11 17 17 N 1.36936 * 109.89816 * 179.97438 * 16 15 12 18 18 H 0.96996 * 124.98730 * 179.97438 * 17 16 15 19 19 C 1.37409 * 110.02274 * 359.97438 * 17 16 15 20 20 N 1.32693 * 133.17469 * 179.97438 * 19 17 16 21 21 C 1.31607 * 121.70462 * 180.02562 * 20 19 17 22 22 C 1.38602 * 121.59172 * 0.02562 * 21 20 19 23 23 C 1.38357 * 119.39680 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 120.99281 * 180.02562 * 23 22 21 25 25 C 1.39819 * 118.01463 * 359.70772 * 23 22 21 26 26 H 0.96996 * 119.99807 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46993 * 60.00097 * 9 7 2 28 28 H 1.08997 * 109.47323 * 300.00310 * 9 7 2 29 29 H 1.09008 * 109.46995 * 60.00203 * 10 9 7 30 30 H 1.08997 * 109.47263 * 300.00662 * 10 9 7 31 31 H 0.97002 * 119.99353 * 343.17502 * 11 10 9 32 32 H 1.08007 * 125.04961 * 359.97438 * 16 15 12 33 33 H 1.08002 * 119.20184 * 179.97438 * 21 20 19 34 34 H 1.08004 * 120.30039 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5129 -4.9308 -0.0001 12 16 2.2878 -6.3341 -0.4154 13 8 1.3391 -7.3795 -0.2534 14 8 2.9570 -6.0751 -1.6420 15 6 3.5445 -6.6118 0.7880 16 6 4.8692 -6.6267 0.5721 17 7 5.5299 -6.8734 1.7459 18 1 6.4936 -6.9315 1.8401 19 6 4.6274 -7.0265 2.7706 20 7 4.7596 -7.2744 4.0675 21 6 3.7154 -7.3790 4.8617 22 6 2.4224 -7.2359 4.3835 23 6 2.2200 -6.9763 3.0397 24 17 0.6184 -6.7890 2.3967 25 6 3.3443 -6.8627 2.2162 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8902 29 1 2.8720 -3.6044 0.8906 30 1 2.8720 -3.6043 -0.8894 31 1 0.5739 -4.9488 0.2428 32 1 5.3435 -6.4677 -0.3851 33 1 3.8698 -7.5820 5.9111 34 1 1.5804 -7.3263 5.0539 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344129321.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:15 Heat of formation + Delta-G solvation = -38.852153 kcal Electronic energy + Delta-G solvation = -23460.074051 eV Core-core repulsion = 19738.356923 eV Total energy + Delta-G solvation = -3721.717127 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.039 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.80159 -39.20291 -38.17848 -37.71847 -36.95421 -36.85257 -34.69431 -33.92241 -31.48354 -30.96414 -30.57220 -26.37957 -24.97452 -24.03193 -23.32480 -22.88069 -20.24339 -19.86705 -18.72425 -18.17513 -18.09301 -17.60099 -17.12370 -16.75296 -16.48101 -16.40124 -15.96980 -15.47363 -15.36686 -15.10109 -14.39612 -14.35492 -13.98250 -13.69419 -13.32741 -13.31324 -13.18087 -13.14247 -13.08135 -12.92233 -12.50753 -12.43901 -12.27169 -11.99419 -11.46648 -11.33953 -11.26920 -10.77332 -10.58377 -10.27065 -9.79150 -9.63360 -8.17914 -6.28631 -0.53744 -0.41093 0.05538 0.86210 0.89497 1.44206 1.46811 1.48952 1.54387 2.13379 2.45128 2.55702 2.79261 3.16902 3.17560 3.39614 3.54961 3.67916 3.91172 4.12294 4.24956 4.26207 4.33942 4.59303 4.76104 4.86220 4.89442 4.99519 5.04161 5.48506 5.52724 5.67427 5.83910 6.03736 6.07796 6.25629 6.73106 6.86934 7.40375 8.94063 Molecular weight = 329.04amu Principal moments of inertia in cm(-1) A = 0.013148 B = 0.004139 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.016020 B = 6763.117868 C = 7033.863284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.021 3.979 10 C 0.140 3.860 11 N -1.112 6.112 12 S 2.730 3.270 13 O -0.977 6.977 14 O -0.988 6.988 15 C -0.771 4.771 16 C 0.235 3.765 17 N -0.549 5.549 18 H 0.447 0.553 19 C 0.279 3.721 20 N -0.497 5.497 21 C 0.151 3.849 22 C -0.171 4.171 23 C 0.013 3.987 24 Cl -0.044 7.044 25 C -0.105 4.105 26 H 0.263 0.737 27 H 0.000 1.000 28 H 0.004 0.996 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.415 0.585 32 H 0.241 0.759 33 H 0.218 0.782 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.093 -16.760 8.913 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.086 0.914 9 C -0.018 4.018 10 C 0.014 3.986 11 N -0.872 5.872 12 S 2.820 3.180 13 O -0.968 6.968 14 O -0.978 6.978 15 C -0.868 4.868 16 C 0.098 3.902 17 N -0.155 5.155 18 H 0.290 0.710 19 C 0.046 3.954 20 N -0.210 5.210 21 C -0.014 4.014 22 C -0.192 4.192 23 C -0.022 4.022 24 Cl -0.015 7.015 25 C -0.112 4.112 26 H 0.072 0.928 27 H 0.019 0.981 28 H 0.022 0.978 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.250 0.750 32 H 0.257 0.743 33 H 0.234 0.766 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 11.849 -17.267 8.425 22.573 hybrid contribution -0.743 1.233 0.225 1.457 sum 11.106 -16.035 8.650 21.337 Atomic orbital electron populations 1.70087 1.07798 1.27851 1.51359 1.25922 0.95698 1.03236 0.94667 0.85512 0.78249 0.78135 0.79215 1.19110 1.21183 1.19116 1.21527 0.93870 0.91686 1.50980 0.91357 1.19136 0.94489 0.92167 0.95960 1.21218 0.94742 0.81847 1.00785 1.55397 1.22306 1.22049 1.87443 1.00366 0.72948 0.71833 0.72892 1.93561 1.61177 1.54944 1.87071 1.93530 1.76793 1.85495 1.41984 1.31722 1.13183 1.31544 1.10318 1.22580 0.89709 0.86747 0.91122 1.41861 1.10074 1.59054 1.04560 0.70996 1.18514 0.86915 1.01147 0.88805 1.66647 1.36636 1.16552 1.01184 1.23301 0.85111 0.92442 1.00503 1.22359 1.01392 1.02729 0.92756 1.21188 0.85902 1.00590 0.94542 1.98441 1.21495 1.95248 1.86308 1.18981 0.93533 1.06239 0.92487 0.92790 0.98141 0.97776 0.92121 0.90994 0.75039 0.74261 0.76590 0.80179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 13.29 21.45 0.28 -55.16 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.54 -29.56 9.11 25.60 0.23 -29.32 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.08 5.12 29.84 0.15 1.23 16 10 C 0.14 5.55 6.16 86.38 0.53 6.08 16 11 N -1.11 -39.41 5.44 -187.49 -1.02 -40.43 16 12 S 2.73 88.84 5.15 -56.49 -0.29 88.55 16 13 O -0.98 -35.10 15.91 -128.00 -2.04 -37.13 16 14 O -0.99 -35.01 17.26 -128.00 -2.21 -37.22 16 15 C -0.77 -20.85 6.33 23.48 0.15 -20.71 16 16 C 0.24 4.41 11.47 82.98 0.95 5.36 16 17 N -0.55 -9.19 6.05 -192.35 -1.16 -10.35 16 18 H 0.45 3.93 8.96 -92.71 -0.83 3.10 16 19 C 0.28 6.55 8.43 133.91 1.13 7.67 16 20 N -0.50 -10.59 10.39 -192.80 -2.00 -12.60 16 21 C 0.15 2.47 11.14 84.81 0.95 3.42 16 22 C -0.17 -3.23 9.93 22.38 0.22 -3.01 16 23 C 0.01 0.35 6.40 22.68 0.15 0.50 16 24 Cl -0.04 -1.29 25.12 -2.72 -0.07 -1.36 16 25 C -0.10 -2.90 6.24 -20.16 -0.13 -3.02 16 26 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 27 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.07 2.78 7.75 -2.39 -0.02 2.76 16 31 H 0.41 14.54 8.24 -96.75 -0.80 13.74 16 32 H 0.24 2.52 8.06 -2.91 -0.02 2.49 16 33 H 0.22 1.48 8.06 -2.91 -0.02 1.45 16 34 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -77.22 324.84 -2.13 -79.35 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -0.45 Total: 12.49 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 4.80 Total: -31.17 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -3.90 Total: -118.53 kcal Atomic # 8 Polarization: -70.11 SS G_CDS: -4.25 Total: -74.36 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 88.84 SS G_CDS: -0.29 Total: 88.55 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.07 Total: -1.36 kcal Total: -77.22 -2.13 -79.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344129321.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.501 kcal (2) G-P(sol) polarization free energy of solvation -77.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds