Wall clock time and date at job start Tue Mar 31 2020 15:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46997 * 90.00238 * 8 6 4 10 10 H 1.48501 * 109.47418 * 210.00367 * 8 6 4 11 11 H 1.48507 * 109.47103 * 330.00231 * 8 6 4 12 12 N 1.46492 * 109.47363 * 120.00126 * 2 1 3 13 13 C 1.46502 * 119.99826 * 59.99817 * 12 2 1 14 14 S 1.65594 * 120.00299 * 240.00373 * 12 2 1 15 15 O 1.42098 * 104.28093 * 206.07012 * 14 12 2 16 16 O 1.42107 * 104.27531 * 333.92641 * 14 12 2 17 17 C 1.81406 * 104.45266 * 89.99803 * 14 12 2 18 18 C 1.52998 * 109.47113 * 180.02562 * 17 14 12 19 19 C 1.52997 * 115.55054 * 325.58433 * 18 17 14 20 20 C 1.53005 * 117.49787 * 111.25203 * 18 17 14 21 21 C 1.52998 * 117.49502 * 179.91023 * 18 17 14 22 22 Cl 1.80299 * 117.50271 * 0.02562 * 21 18 17 23 23 Cl 1.80310 * 117.49556 * 145.00019 * 21 18 17 24 24 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47121 * 90.00454 * 13 12 2 29 29 H 1.08998 * 109.47156 * 209.99669 * 13 12 2 30 30 H 1.09000 * 109.47663 * 330.00193 * 13 12 2 31 31 H 1.09003 * 109.46774 * 300.00055 * 17 14 12 32 32 H 1.08994 * 109.46682 * 60.00106 * 17 14 12 33 33 H 1.08997 * 109.47330 * 34.41704 * 19 18 17 34 34 H 1.09000 * 109.46966 * 154.41687 * 19 18 17 35 35 H 1.09000 * 109.47093 * 274.41170 * 19 18 17 36 36 H 1.08993 * 117.50329 * 214.98030 * 20 18 17 37 37 H 1.09003 * 117.49715 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1614 -4.4119 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7316 -0.9106 2.9104 16 8 3.6005 1.1302 1.5181 17 6 1.7964 0.8412 3.4625 18 6 2.5632 1.6210 4.5324 19 6 3.9191 1.0350 4.9313 20 6 2.4250 3.1448 4.5311 21 6 1.7450 2.3151 5.6231 22 17 -0.0490 2.1509 5.5497 23 17 2.4525 2.3799 7.2803 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7094 1.1619 -3.4844 28 1 2.4158 -2.7377 0.9715 29 1 1.6240 -2.2853 2.5000 30 1 0.6905 -2.3003 0.9845 31 1 1.1233 1.5162 2.9338 32 1 1.2177 0.0478 3.9355 33 1 4.3872 0.5765 4.0603 34 1 4.5604 1.8297 5.3124 35 1 3.7755 0.2814 5.7056 36 1 3.2998 3.7298 4.8148 37 1 1.7874 3.5916 3.7682 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866736708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:50 Heat of formation + Delta-G solvation = -51.200325 kcal Electronic energy + Delta-G solvation = -22847.825155 eV Core-core repulsion = 19226.680065 eV Total energy + Delta-G solvation = -3621.145090 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 329.041 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.01245 -36.70491 -36.27071 -36.26044 -36.08840 -35.44607 -32.62620 -29.82994 -29.15173 -28.14434 -25.63628 -25.15516 -22.67488 -20.87993 -19.88728 -18.22898 -17.25170 -16.82961 -16.49181 -15.66481 -15.44970 -15.27735 -14.72605 -14.10938 -13.69516 -13.58688 -13.31082 -13.19107 -13.03565 -12.61641 -12.27635 -12.06135 -11.92226 -11.77417 -11.69862 -11.55819 -11.47845 -11.32349 -11.24124 -11.13318 -10.99894 -10.81510 -10.73891 -10.49215 -10.39443 -10.32309 -10.05022 -9.76943 -9.28815 -8.47976 -8.00598 -6.09614 -4.15716 0.62043 0.92656 1.92442 2.82279 3.21855 3.27644 3.34850 3.39959 3.82199 3.91670 4.14562 4.37583 4.39162 4.52276 4.65105 5.20930 5.22125 5.24942 5.32668 5.35882 5.46491 5.53598 5.68910 5.90596 6.10280 6.32066 6.57186 6.69173 6.74017 6.94210 7.36730 7.58612 7.74937 8.00109 8.24063 8.86361 9.50020 10.96271 Molecular weight = 329.04amu Principal moments of inertia in cm(-1) A = 0.023406 B = 0.003743 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.974769 B = 7478.219051 C = 7886.479719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.264 3.736 3 H 0.062 0.938 4 C -0.517 4.517 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.982 5.982 13 C 0.107 3.893 14 S 2.611 3.389 15 O -0.964 6.964 16 O -0.941 6.941 17 C -0.617 4.617 18 C -0.077 4.077 19 C -0.153 4.153 20 C -0.131 4.131 21 C 0.013 3.987 22 Cl -0.088 7.088 23 Cl -0.093 7.093 24 H 0.010 0.990 25 H 0.095 0.905 26 H 0.036 0.964 27 H 0.263 0.737 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.129 0.871 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 2.793 16.382 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.079 0.921 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.822 5.822 13 C -0.039 4.039 14 S 2.701 3.299 15 O -0.955 6.955 16 O -0.931 6.931 17 C -0.741 4.741 18 C -0.079 4.079 19 C -0.210 4.210 20 C -0.169 4.169 21 C -0.040 4.040 22 Cl -0.061 7.061 23 Cl -0.066 7.066 24 H 0.029 0.971 25 H 0.113 0.887 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.147 0.853 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.364 2.957 16.372 16.641 hybrid contribution -0.781 -0.336 -0.420 0.949 sum -0.417 2.620 15.952 16.171 Atomic orbital electron populations 1.22182 0.98319 0.99964 1.00724 1.18811 0.91149 0.93270 0.80592 0.92080 1.21299 1.31535 1.12970 0.89854 0.91870 1.24902 0.94975 0.95005 0.98999 1.69848 1.36639 1.22686 1.23827 0.86489 0.79330 0.79292 0.82277 1.20657 1.21105 1.19786 1.57437 1.70619 1.19520 1.34603 1.21201 1.01857 0.81933 0.98932 1.05121 0.75680 0.74774 0.74295 1.93539 1.67122 1.56378 1.78431 1.93615 1.72319 1.60606 1.66583 1.30662 1.17985 1.12199 1.13255 1.21773 0.96411 0.95139 0.94589 1.21992 0.92145 1.02575 1.04256 1.24330 1.02529 0.93153 0.96878 1.26976 0.82424 1.11540 0.83018 1.98751 1.11428 1.98020 1.97855 1.98739 1.83354 1.98547 1.25986 0.97119 0.88665 0.94542 0.92677 0.92906 0.93148 0.90869 0.84188 0.84235 0.90431 0.89856 0.89275 0.85295 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.95 37.16 0.33 -2.97 16 2 C 0.26 6.22 2.57 -69.08 -0.18 6.04 16 3 H 0.06 1.57 6.87 -51.93 -0.36 1.22 16 4 C -0.52 -13.64 8.37 -34.44 -0.29 -13.93 16 5 H 0.06 1.67 7.65 -52.48 -0.40 1.27 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.98 -19.37 2.99 -115.85 -0.35 -19.72 16 13 C 0.11 1.82 9.44 59.85 0.56 2.38 16 14 S 2.61 46.71 4.15 -107.50 -0.45 46.26 16 15 O -0.96 -18.03 14.94 -57.54 -0.86 -18.89 16 16 O -0.94 -20.26 16.57 -57.54 -0.95 -21.21 16 17 C -0.62 -8.21 5.39 37.16 0.20 -8.01 16 18 C -0.08 -0.92 2.47 -154.51 -0.38 -1.30 16 19 C -0.15 -1.80 8.39 37.16 0.31 -1.49 16 20 C -0.13 -1.34 9.51 -26.69 -0.25 -1.59 16 21 C 0.01 0.14 3.61 -26.69 -0.10 0.04 16 22 Cl -0.09 -1.01 28.32 -51.86 -1.47 -2.47 16 23 Cl -0.09 -0.96 28.32 -51.86 -1.47 -2.43 16 24 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 25 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 26 H 0.04 0.74 6.66 -51.93 -0.35 0.40 16 27 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 30 H 0.07 1.19 6.43 -51.93 -0.33 0.86 16 31 H 0.14 1.77 7.90 -51.92 -0.41 1.36 16 32 H 0.14 1.62 8.14 -51.93 -0.42 1.19 16 33 H 0.08 1.07 4.58 -47.22 -0.22 0.85 16 34 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.13 1.05 8.05 -51.93 -0.42 0.63 16 37 H 0.13 1.23 8.05 -51.93 -0.42 0.81 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -30.39 340.30 -9.55 -39.94 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.86 Total: 0.44 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 0.12 Total: -19.23 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.28 Total: -43.34 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -1.81 Total: -40.11 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 46.71 SS G_CDS: -0.45 Total: 46.26 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -2.94 Total: -4.91 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.39 -9.55 -39.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866736708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.262 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds