Wall clock time and date at job start Tue Mar 31 2020 15:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46997 * 90.00238 * 8 6 4 10 10 H 1.48501 * 109.47418 * 210.00367 * 8 6 4 11 11 H 1.48507 * 109.47103 * 330.00231 * 8 6 4 12 12 N 1.46492 * 109.47363 * 120.00126 * 2 1 3 13 13 C 1.46502 * 119.99826 * 59.99817 * 12 2 1 14 14 S 1.65594 * 120.00299 * 240.00373 * 12 2 1 15 15 O 1.42098 * 104.28093 * 206.07012 * 14 12 2 16 16 O 1.42107 * 104.27531 * 333.92641 * 14 12 2 17 17 C 1.81406 * 104.45266 * 89.99803 * 14 12 2 18 18 C 1.52998 * 109.47113 * 180.02562 * 17 14 12 19 19 C 1.52997 * 115.55054 * 325.58433 * 18 17 14 20 20 C 1.53005 * 117.49787 * 111.25203 * 18 17 14 21 21 C 1.52998 * 117.49502 * 179.91023 * 18 17 14 22 22 Cl 1.80299 * 117.50271 * 0.02562 * 21 18 17 23 23 Cl 1.80310 * 117.49556 * 145.00019 * 21 18 17 24 24 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47121 * 90.00454 * 13 12 2 29 29 H 1.08998 * 109.47156 * 209.99669 * 13 12 2 30 30 H 1.09000 * 109.47663 * 330.00193 * 13 12 2 31 31 H 1.09003 * 109.46774 * 300.00055 * 17 14 12 32 32 H 1.08994 * 109.46682 * 60.00106 * 17 14 12 33 33 H 1.08997 * 109.47330 * 34.41704 * 19 18 17 34 34 H 1.09000 * 109.46966 * 154.41687 * 19 18 17 35 35 H 1.09000 * 109.47093 * 274.41170 * 19 18 17 36 36 H 1.08993 * 117.50329 * 214.98030 * 20 18 17 37 37 H 1.09003 * 117.49715 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1614 -4.4119 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7316 -0.9106 2.9104 16 8 3.6005 1.1302 1.5181 17 6 1.7964 0.8412 3.4625 18 6 2.5632 1.6210 4.5324 19 6 3.9191 1.0350 4.9313 20 6 2.4250 3.1448 4.5311 21 6 1.7450 2.3151 5.6231 22 17 -0.0490 2.1509 5.5497 23 17 2.4525 2.3799 7.2803 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7094 1.1619 -3.4844 28 1 2.4158 -2.7377 0.9715 29 1 1.6240 -2.2853 2.5000 30 1 0.6905 -2.3003 0.9845 31 1 1.1233 1.5162 2.9338 32 1 1.2177 0.0478 3.9355 33 1 4.3872 0.5765 4.0603 34 1 4.5604 1.8297 5.3124 35 1 3.7755 0.2814 5.7056 36 1 3.2998 3.7298 4.8148 37 1 1.7874 3.5916 3.7682 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866736708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:49 Heat of formation + Delta-G solvation = -70.007855 kcal Electronic energy + Delta-G solvation = -22848.640711 eV Core-core repulsion = 19226.680065 eV Total energy + Delta-G solvation = -3621.960646 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 329.041 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.90813 -38.21208 -37.88567 -37.11398 -37.07810 -36.82841 -34.52117 -30.92781 -30.78639 -29.15802 -27.26068 -26.94870 -23.49205 -22.57506 -20.92497 -19.67348 -18.70290 -18.40173 -17.82885 -17.19263 -16.73966 -16.44620 -16.25583 -15.41179 -14.97359 -14.79355 -14.76574 -14.38708 -14.21526 -13.95587 -13.45328 -13.34271 -13.14842 -13.11878 -13.02377 -12.97824 -12.81596 -12.72450 -12.59987 -12.49630 -12.32314 -12.23212 -12.15996 -12.06433 -11.87479 -11.76544 -11.25907 -11.11511 -10.74882 -10.47983 -9.61135 -8.10342 -6.22806 -0.74731 0.06324 1.06782 1.42542 1.44907 1.53984 1.79968 1.96447 2.45208 2.83786 2.97981 3.04996 3.18088 3.26730 3.31285 3.60411 4.08538 4.10267 4.38034 4.45131 4.56612 4.62153 4.69118 4.72950 4.85859 4.99566 5.02386 5.06895 5.14305 5.21955 5.63586 5.74609 5.90152 6.15650 6.33069 6.83961 7.45724 8.93644 Molecular weight = 329.04amu Principal moments of inertia in cm(-1) A = 0.023406 B = 0.003743 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.974769 B = 7478.219051 C = 7886.479719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.268 3.732 3 H 0.032 0.968 4 C -0.537 4.537 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.951 3.049 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.277 1.277 12 N -0.995 5.995 13 C 0.099 3.901 14 S 2.613 3.387 15 O -0.979 6.979 16 O -0.988 6.988 17 C -0.589 4.589 18 C -0.097 4.097 19 C -0.157 4.157 20 C -0.127 4.127 21 C 0.020 3.980 22 Cl -0.092 7.092 23 Cl -0.085 7.085 24 H 0.041 0.959 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.264 0.736 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.163 0.837 33 H 0.054 0.946 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.151 0.849 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.051 2.918 17.993 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.164 3.836 3 H 0.050 0.950 4 C -0.576 4.576 5 H 0.071 0.929 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.777 3.223 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.202 1.202 12 N -0.833 5.833 13 C -0.046 4.046 14 S 2.709 3.291 15 O -0.970 6.970 16 O -0.978 6.978 17 C -0.719 4.719 18 C -0.100 4.100 19 C -0.214 4.214 20 C -0.164 4.164 21 C -0.033 4.033 22 Cl -0.064 7.064 23 Cl -0.058 7.058 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.169 0.831 32 H 0.181 0.819 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.169 0.831 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.284 3.037 17.949 18.206 hybrid contribution -0.542 -0.354 -0.778 1.012 sum -0.826 2.683 17.171 17.399 Atomic orbital electron populations 1.21987 0.96787 1.00471 1.00858 1.18470 0.92187 0.91738 0.81197 0.95002 1.21627 1.31503 1.12911 0.91603 0.92949 1.25580 0.95278 0.95721 1.01463 1.69954 1.37323 1.23545 1.24311 0.85662 0.78748 0.78526 0.79337 1.19539 1.20814 1.20167 1.57314 1.70647 1.20761 1.34598 1.21388 1.01616 0.80407 1.01190 1.04789 0.75850 0.74037 0.74424 1.93517 1.68154 1.57020 1.78302 1.93555 1.74171 1.61546 1.68556 1.30306 1.16364 1.13081 1.12155 1.21811 0.96669 0.96438 0.95069 1.22049 0.92332 1.03550 1.03503 1.24580 1.03270 0.92090 0.96464 1.26908 0.82073 1.10965 0.83345 1.98757 1.11768 1.98028 1.97884 1.98747 1.83188 1.98495 1.25362 0.94039 0.91385 0.93769 0.92636 0.94280 0.89665 0.90287 0.83055 0.81896 0.92759 0.87699 0.88495 0.83117 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 8.95 71.98 0.64 -5.40 16 2 C 0.27 12.75 2.57 44.25 0.11 12.87 16 3 H 0.03 1.70 6.87 -2.39 -0.02 1.68 16 4 C -0.54 -28.87 8.37 25.60 0.21 -28.65 16 5 H 0.05 2.84 7.65 -2.91 -0.02 2.82 16 6 C 0.02 1.05 5.30 84.65 0.45 1.50 16 7 N -0.91 -50.31 11.32 21.45 0.24 -50.06 16 8 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.99 -39.01 2.99 -520.45 -1.56 -40.57 16 13 C 0.10 3.29 9.44 127.77 1.21 4.49 16 14 S 2.61 92.66 4.15 -56.49 -0.23 92.43 16 15 O -0.98 -36.33 14.94 -127.65 -1.91 -38.24 16 16 O -0.99 -43.55 16.57 -127.65 -2.12 -45.67 16 17 C -0.59 -14.40 5.39 71.98 0.39 -14.01 16 18 C -0.10 -2.10 2.47 -52.18 -0.13 -2.23 16 19 C -0.16 -3.41 8.39 71.98 0.60 -2.81 16 20 C -0.13 -2.23 9.51 30.62 0.29 -1.94 16 21 C 0.02 0.38 3.61 30.62 0.11 0.49 16 22 Cl -0.09 -1.84 28.32 -2.72 -0.08 -1.92 16 23 Cl -0.09 -1.52 28.32 -2.72 -0.08 -1.60 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.07 3.30 6.07 -2.39 -0.01 3.29 16 26 H 0.04 1.77 6.66 -2.39 -0.02 1.75 16 27 H 0.26 13.88 8.31 -92.71 -0.77 13.10 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 2.17 7.79 -2.39 -0.02 2.15 16 30 H 0.08 2.49 6.43 -2.39 -0.02 2.47 16 31 H 0.15 3.45 7.90 -2.39 -0.02 3.43 16 32 H 0.16 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.05 1.46 4.58 -5.38 -0.02 1.43 16 34 H 0.10 1.75 7.90 -2.39 -0.02 1.73 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.88 16 36 H 0.15 1.96 8.05 -2.39 -0.02 1.95 16 37 H 0.14 2.23 8.05 -2.39 -0.02 2.21 16 Total: -1.00 -66.28 340.30 1.26 -65.02 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.07 Total: 11.22 kcal Atomic # 6 Polarization: -39.59 SS G_CDS: 3.89 Total: -35.70 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -1.32 Total: -90.63 kcal Atomic # 8 Polarization: -79.88 SS G_CDS: -4.02 Total: -83.90 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 92.66 SS G_CDS: -0.23 Total: 92.43 kcal Atomic # 17 Polarization: -3.37 SS G_CDS: -0.15 Total: -3.52 kcal Total: -66.28 1.26 -65.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866736708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.983 kcal (2) G-P(sol) polarization free energy of solvation -66.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds