Wall clock time and date at job start Tue Mar 31 2020 15:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21699 * 119.99954 * 0.02562 * 16 15 14 18 18 C 1.46676 * 120.00521 * 179.97438 * 16 15 14 19 19 C 1.37879 * 126.22423 * 179.69105 * 18 16 15 20 20 C 1.39884 * 107.09062 * 179.85005 * 19 18 16 21 21 Br 1.89093 * 126.07559 * 180.15918 * 20 19 18 22 22 C 1.35509 * 107.84771 * 0.42288 * 20 19 18 23 23 N 1.35590 * 108.85958 * 359.73636 * 22 20 19 24 24 H 0.97008 * 125.67914 * 180.02562 * 23 22 20 25 25 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 26 26 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 27 27 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 29 29 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 30 30 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 31 31 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 33 33 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 34 34 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 35 35 H 1.08002 * 126.45908 * 0.02562 * 19 18 16 36 36 H 1.08009 * 125.56479 * 179.75968 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 0.9607 1.4202 -4.6925 10 14 2.1263 -0.3163 -6.5109 11 1 1.5331 -1.6590 -6.7353 12 1 1.6240 0.6261 -7.5429 13 1 3.6057 -0.4071 -6.6024 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6278 -1.4469 3.7798 18 6 1.6081 0.3446 4.8605 19 6 1.8844 0.0029 6.1674 20 6 1.3357 1.0019 6.9783 21 35 1.4072 1.0674 8.8668 22 6 0.7386 1.9113 6.1704 23 7 0.8973 1.5230 4.8810 24 1 0.5654 1.9971 4.1024 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -1.7199 -1.2950 29 1 3.1263 -0.7995 -1.2055 30 1 1.1488 0.8593 -2.3518 31 1 0.7072 1.9230 -5.4823 32 1 1.6054 -1.7197 1.2953 33 1 3.1263 -0.7993 1.2057 34 1 1.1483 0.8592 2.3518 35 1 2.4253 -0.8700 6.5019 36 1 0.2212 2.8003 6.4998 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753623896.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:04 Heat of formation + Delta-G solvation = 11.368303 kcal Electronic energy + Delta-G solvation = -19151.185217 eV Core-core repulsion = 15910.298349 eV Total energy + Delta-G solvation = -3240.886867 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 329.048 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.76286 -39.38477 -36.90915 -34.53230 -32.89034 -32.33604 -30.52087 -30.17693 -29.09202 -26.62051 -25.44538 -23.26986 -22.17282 -20.63656 -20.53009 -20.24844 -19.01845 -17.11893 -16.23389 -16.04856 -15.74095 -14.92600 -14.64998 -14.31988 -14.08356 -14.03774 -13.65511 -13.21283 -13.11747 -12.99795 -12.70256 -12.40329 -12.13646 -11.43596 -11.13530 -10.96817 -10.77847 -10.66624 -10.59257 -10.51372 -10.28990 -10.06326 -9.72278 -9.32320 -9.20448 -8.91675 -8.66013 -6.97469 -5.81487 -3.10109 1.04903 1.40881 2.00264 2.63612 2.97968 3.10215 3.41856 3.46197 3.47169 4.47284 4.52649 4.55116 4.76275 4.93380 5.10977 5.21115 5.26676 5.48426 5.53196 5.69904 5.85121 5.87907 5.99124 6.01462 6.11460 6.18906 6.29078 6.34465 6.56447 6.69372 6.76317 6.78871 7.26921 7.66137 7.94920 8.37676 9.48944 10.05397 10.40079 11.41424 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.054127 B = 0.001807 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.178838 B =15491.938913 C =15848.369079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.127 3.873 15 N -0.723 5.723 16 C 0.586 3.414 17 O -0.525 6.525 18 C -0.039 4.039 19 C -0.080 4.080 20 C -0.183 4.183 21 Br -0.028 7.028 22 C 0.063 3.937 23 N -0.530 5.530 24 H 0.424 0.576 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.384 0.616 31 H 0.256 0.744 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.394 0.606 35 H 0.158 0.842 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 3.326 28.802 29.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.740 3.260 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.003 3.997 15 N -0.374 5.374 16 C 0.372 3.628 17 O -0.401 6.401 18 C -0.153 4.153 19 C -0.107 4.107 20 C -0.268 4.268 21 Br 0.056 6.944 22 C -0.077 4.077 23 N -0.126 5.126 24 H 0.263 0.737 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.218 0.782 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.228 0.772 35 H 0.175 0.825 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.994 2.520 29.219 29.395 hybrid contribution -0.399 0.718 -1.755 1.937 sum -2.393 3.237 27.465 27.758 Atomic orbital electron populations 1.21797 0.94653 1.02089 1.01343 1.21568 0.96692 1.00498 0.94241 0.90557 1.20573 0.96697 0.94253 0.85265 1.42323 1.66850 1.27767 1.00596 1.19194 1.28821 1.05440 0.83656 0.91161 1.24743 1.00987 0.97371 0.97925 1.69645 1.43577 1.16492 1.28672 0.86240 0.78064 0.77707 0.84013 1.21225 1.21695 1.21235 1.21491 1.00489 0.95309 0.82366 1.45946 1.57693 1.27715 1.06066 1.16950 0.79695 0.84512 0.81632 1.90874 1.39857 1.23344 1.85997 1.20533 1.07828 0.91359 0.95579 1.21201 1.00860 0.99334 0.89311 1.21018 1.13013 1.01826 0.90993 1.96634 1.98422 1.98799 1.00560 1.21900 1.02986 1.00595 0.82209 1.42067 1.42628 1.19687 1.08238 0.73730 0.94238 0.91015 0.92638 0.95879 0.96025 0.78245 0.93464 0.90902 0.90904 0.77231 0.82478 0.80112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.94 37.16 0.33 -1.60 16 2 C -0.11 -1.59 2.46 -90.62 -0.22 -1.81 16 3 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 4 C 0.16 3.06 5.65 -4.04 -0.02 3.04 16 5 N -0.73 -17.84 5.33 -59.91 -0.32 -18.16 16 6 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 9 N -0.94 -27.73 13.06 55.49 0.72 -27.00 16 10 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.13 1.63 5.06 -4.05 -0.02 1.61 16 15 N -0.72 -7.71 5.28 -61.62 -0.33 -8.03 16 16 C 0.59 7.26 7.79 -12.86 -0.10 7.16 16 17 O -0.52 -8.52 16.88 5.19 0.09 -8.44 16 18 C -0.04 -0.40 7.05 -81.98 -0.58 -0.97 16 19 C -0.08 -0.83 10.63 -39.10 -0.42 -1.24 16 20 C -0.18 -1.60 6.53 -39.94 -0.26 -1.86 16 21 Br -0.03 -0.23 34.08 -68.01 -2.32 -2.54 16 22 C 0.06 0.41 11.86 -16.87 -0.20 0.21 16 23 N -0.53 -3.46 5.99 -9.36 -0.06 -3.51 16 24 H 0.42 1.53 8.19 -40.82 -0.33 1.19 16 25 H 0.04 0.41 7.18 -51.93 -0.37 0.04 16 26 H 0.07 1.17 7.18 -51.93 -0.37 0.79 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.38 9.71 6.85 -40.82 -0.28 9.43 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.39 3.11 6.78 -40.82 -0.28 2.83 16 35 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.18 0.60 8.06 -52.48 -0.42 0.18 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -33.06 330.26 -8.55 -41.61 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.56 Total: 6.67 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.74 Total: -2.74 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.02 Total: -56.71 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -2.32 Total: -2.54 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.06 -8.55 -41.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753623896.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.979 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds