Wall clock time and date at job start Tue Mar 31 2020 15:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46819 * 2 1 4 4 C 1.53005 * 109.47559 * 119.99918 * 2 1 3 5 5 N 1.46500 * 109.47013 * 295.00607 * 4 2 1 6 6 C 1.36934 * 119.99756 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00143 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00017 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99932 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00167 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47108 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47260 * 119.99639 * 10 8 6 13 13 H 1.48505 * 109.47085 * 240.00118 * 10 8 6 14 14 C 1.53002 * 109.47320 * 240.00579 * 2 1 3 15 15 N 1.46494 * 109.47001 * 64.99504 * 14 2 1 16 16 C 1.34784 * 119.99635 * 180.02562 * 15 14 2 17 17 O 1.21690 * 119.99870 * 0.02562 * 16 15 14 18 18 C 1.46669 * 119.99658 * 180.02562 * 16 15 14 19 19 C 1.37889 * 126.22362 * 179.69143 * 18 16 15 20 20 C 1.39882 * 107.09121 * 179.84687 * 19 18 16 21 21 Br 1.89097 * 126.07168 * 180.15882 * 20 19 18 22 22 C 1.35497 * 107.85242 * 0.41571 * 20 19 18 23 23 N 1.35594 * 108.85935 * 359.74190 * 22 20 19 24 24 H 0.97008 * 125.67658 * 180.02562 * 23 22 20 25 25 H 1.09008 * 109.47216 * 299.99675 * 1 2 3 26 26 H 1.08995 * 109.47420 * 60.00028 * 1 2 3 27 27 H 1.09006 * 109.46819 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46652 * 55.00052 * 4 2 1 29 29 H 1.08990 * 109.47271 * 175.00001 * 4 2 1 30 30 H 0.96997 * 120.00203 * 359.97438 * 5 4 2 31 31 H 0.97008 * 120.00144 * 180.02562 * 9 8 6 32 32 H 1.09005 * 109.46767 * 304.99570 * 14 2 1 33 33 H 1.09002 * 109.47113 * 184.99910 * 14 2 1 34 34 H 0.96995 * 120.00292 * 0.27801 * 15 14 2 35 35 H 1.07998 * 126.45441 * 359.97438 * 19 18 16 36 36 H 1.08001 * 125.56868 * 179.76201 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6524 0.0353 2.4424 6 6 2.0020 -0.4203 3.6855 7 1 2.5632 -1.3375 3.7864 8 6 1.6352 0.2968 4.8160 9 7 0.9518 1.4149 4.6931 10 14 2.1115 -0.3251 6.5118 11 1 2.8705 -1.5945 6.3784 12 1 2.9573 0.6888 7.1914 13 1 0.8848 -0.5644 7.3139 14 6 2.0400 -0.7211 -1.2493 15 7 1.6524 0.0355 -2.4423 16 6 1.9955 -0.4134 -3.6660 17 8 2.6270 -1.4474 -3.7797 18 6 1.6079 0.3444 -4.8604 19 6 1.8944 0.0090 -6.1668 20 6 1.3353 1.0018 -6.9783 21 35 1.4067 1.0672 -8.8668 22 6 0.7384 1.9111 -6.1704 23 7 0.8971 1.5229 -4.8810 24 1 0.5647 1.9967 -4.1025 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7994 1.2056 30 1 1.1488 0.8593 2.3518 31 1 0.6958 1.9162 5.4831 32 1 1.6054 -1.7197 -1.2952 33 1 3.1263 -0.7993 -1.2056 34 1 1.1519 0.8614 -2.3515 35 1 2.4449 -0.8581 -6.5008 36 1 0.2204 2.7998 -6.4998 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753623897.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:08 Heat of formation + Delta-G solvation = 11.206491 kcal Electronic energy + Delta-G solvation = -19151.382429 eV Core-core repulsion = 15910.488545 eV Total energy + Delta-G solvation = -3240.893884 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 329.048 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.76322 -39.38620 -36.91143 -34.53576 -32.89264 -32.33764 -30.52148 -30.17948 -29.09346 -26.62074 -25.44926 -23.27343 -22.17689 -20.63776 -20.53053 -20.25027 -19.01889 -17.12269 -16.23509 -16.05011 -15.74089 -14.92883 -14.65135 -14.31989 -14.08538 -14.03642 -13.66591 -13.20677 -13.11719 -12.99683 -12.71218 -12.40299 -12.14048 -11.43646 -11.13775 -10.98639 -10.79338 -10.67009 -10.59481 -10.51159 -10.26825 -10.02366 -9.73424 -9.32376 -9.20509 -8.93112 -8.66097 -6.97686 -5.82116 -3.10617 1.04799 1.40797 2.00222 2.63548 2.97913 3.10149 3.40397 3.46602 3.48517 4.47253 4.52581 4.54749 4.76250 4.93249 5.10855 5.21024 5.26572 5.48365 5.52973 5.69828 5.85009 5.87736 5.98930 6.01374 6.11289 6.18829 6.28964 6.34317 6.56252 6.69199 6.76245 6.78611 7.26860 7.66853 7.94836 8.36976 9.48512 10.04970 10.39622 11.40929 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.054206 B = 0.001807 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.424258 B =15492.847038 C =15850.096279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.072 0.928 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.127 3.873 15 N -0.723 5.723 16 C 0.586 3.414 17 O -0.525 6.525 18 C -0.039 4.039 19 C -0.080 4.080 20 C -0.182 4.182 21 Br -0.028 7.028 22 C 0.063 3.937 23 N -0.530 5.530 24 H 0.424 0.576 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.383 0.617 31 H 0.254 0.746 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.394 0.606 35 H 0.158 0.842 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 3.303 -28.854 29.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.370 4.370 7 H 0.090 0.910 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.374 5.374 16 C 0.372 3.628 17 O -0.401 6.401 18 C -0.153 4.153 19 C -0.107 4.107 20 C -0.268 4.268 21 Br 0.056 6.944 22 C -0.077 4.077 23 N -0.126 5.126 24 H 0.263 0.737 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.218 0.782 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.228 0.772 35 H 0.175 0.825 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.916 2.479 -29.279 29.446 hybrid contribution -0.416 0.739 1.761 1.955 sum -2.333 3.218 -27.518 27.803 Atomic orbital electron populations 1.21797 0.94650 1.02091 1.01347 1.21568 0.96695 1.00495 0.94242 0.90560 1.20576 0.96708 0.94247 0.85263 1.42337 1.66944 1.27671 1.00604 1.19284 1.28614 1.05458 0.83603 0.91045 1.24744 1.01008 0.97406 0.97930 1.69663 1.43652 1.16611 1.28421 0.86100 0.77608 0.77866 0.84526 1.20501 1.21858 1.21860 1.21493 1.00477 0.95319 0.82367 1.45949 1.57864 1.27553 1.06065 1.16948 0.79669 0.84533 0.81632 1.90872 1.39872 1.23320 1.85997 1.20535 1.07700 0.91471 0.95597 1.21203 1.00741 0.99444 0.89319 1.21015 1.12861 1.01982 0.90985 1.96634 1.98425 1.98796 1.00559 1.21897 1.03033 1.00560 0.82199 1.42069 1.42705 1.19609 1.08240 0.73731 0.91018 0.94230 0.92639 0.95872 0.96008 0.78250 0.93567 0.90890 0.90915 0.77231 0.82479 0.80113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.94 37.15 0.33 -1.60 16 2 C -0.11 -1.59 2.46 -90.62 -0.22 -1.81 16 3 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.16 3.06 5.65 -4.04 -0.02 3.04 16 5 N -0.73 -17.83 5.33 -59.91 -0.32 -18.15 16 6 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 10 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 14 C 0.13 1.62 5.06 -4.04 -0.02 1.60 16 15 N -0.72 -7.70 5.28 -61.62 -0.33 -8.02 16 16 C 0.59 7.26 7.79 -12.85 -0.10 7.16 16 17 O -0.52 -8.51 16.88 5.20 0.09 -8.43 16 18 C -0.04 -0.40 7.06 -81.98 -0.58 -0.97 16 19 C -0.08 -0.83 10.63 -39.09 -0.42 -1.24 16 20 C -0.18 -1.60 6.53 -39.95 -0.26 -1.86 16 21 Br -0.03 -0.23 34.08 -68.01 -2.32 -2.54 16 22 C 0.06 0.41 11.86 -16.87 -0.20 0.21 16 23 N -0.53 -3.45 5.99 -9.37 -0.06 -3.51 16 24 H 0.42 1.52 8.19 -40.82 -0.33 1.19 16 25 H 0.07 1.17 7.18 -51.92 -0.37 0.79 16 26 H 0.04 0.41 7.19 -51.93 -0.37 0.04 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.38 9.70 6.85 -40.82 -0.28 9.42 16 31 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.39 3.10 6.79 -40.82 -0.28 2.83 16 35 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.18 0.60 8.06 -52.49 -0.42 0.17 16 LS Contribution 330.27 15.07 4.98 4.98 Total: -1.00 -33.09 330.27 -8.55 -41.65 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -4.57 Total: 6.57 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -1.74 Total: -2.73 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.02 Total: -56.67 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -2.32 Total: -2.54 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.09 -8.55 -41.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753623897.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.854 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds