Wall clock time and date at job start Tue Mar 31 2020 14:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47280 * 2 1 4 4 N 1.46909 * 109.46967 * 119.99737 * 2 1 3 5 5 C 1.46895 * 110.99854 * 296.21070 * 4 2 1 6 6 C 1.50702 * 109.47014 * 164.06030 * 5 4 2 7 7 H 1.07998 * 119.99780 * 355.32530 * 6 5 4 8 8 C 1.37874 * 120.00105 * 175.32539 * 6 5 4 9 9 N 1.31517 * 119.99888 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99990 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47207 * 90.00024 * 10 8 6 12 12 H 1.48503 * 109.47277 * 210.00177 * 10 8 6 13 13 H 1.48495 * 109.47403 * 330.00056 * 10 8 6 14 14 C 1.46894 * 111.00007 * 172.25205 * 4 2 1 15 15 C 1.50705 * 109.47366 * 293.95632 * 14 4 2 16 16 C 1.38209 * 120.01093 * 259.72549 * 15 14 4 17 17 C 1.38299 * 120.01830 * 179.76887 * 16 15 14 18 18 Br 1.89105 * 119.98508 * 180.27619 * 17 16 15 19 19 C 1.38346 * 120.03034 * 0.50241 * 17 16 15 20 20 C 1.38169 * 120.01895 * 359.74818 * 19 17 16 21 21 C 1.38441 * 120.00842 * 79.99374 * 15 14 4 22 22 F 1.35095 * 120.01329 * 0.02562 * 21 15 14 23 23 H 1.09003 * 109.47327 * 307.49805 * 1 2 3 24 24 H 1.08996 * 109.47108 * 67.49461 * 1 2 3 25 25 H 1.08996 * 109.47798 * 187.49787 * 1 2 3 26 26 H 1.08996 * 109.47037 * 239.99512 * 2 1 3 27 27 H 1.09004 * 109.46986 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46843 * 299.99543 * 3 2 1 29 29 H 1.09000 * 109.47180 * 60.00184 * 3 2 1 30 30 H 1.09004 * 109.47095 * 284.05512 * 5 4 2 31 31 H 1.08993 * 109.47479 * 44.05710 * 5 4 2 32 32 H 0.97005 * 119.99914 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.47344 * 53.95034 * 14 4 2 34 34 H 1.08999 * 109.47178 * 173.95489 * 14 4 2 35 35 H 1.08001 * 119.98841 * 359.97438 * 16 15 14 36 36 H 1.08006 * 119.99404 * 179.72924 * 19 17 16 37 37 H 1.07996 * 120.01294 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 1.6240 0.0240 2.4194 6 6 1.7877 -0.8841 3.6108 7 1 2.0768 -1.9149 3.4684 8 6 1.5684 -0.3991 4.8826 9 7 1.2158 0.8560 5.0560 10 14 1.7705 -1.5250 6.3594 11 1 3.1726 -1.4587 6.8442 12 1 0.8513 -1.0913 7.4421 13 1 1.4483 -2.9202 5.9660 14 6 3.4763 -0.8743 1.1447 15 6 3.8230 -1.8160 0.0204 16 6 4.1031 -3.1421 0.2909 17 6 4.4166 -4.0076 -0.7413 18 35 4.7920 -5.8236 -0.3709 19 6 4.4604 -3.5443 -2.0441 20 6 4.1858 -2.2176 -2.3156 21 6 3.8666 -1.3517 -1.2831 22 9 3.5989 -0.0543 -1.5476 23 1 -0.3634 0.6256 0.8153 24 1 -0.3633 0.3933 -0.9494 25 1 -0.3634 -1.0188 0.1341 26 1 1.8933 -0.5139 -0.8899 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.2545 0.9044 2.5443 31 1 0.5818 0.3322 2.3379 32 1 1.0619 1.1974 5.9509 33 1 3.9565 0.0890 0.9728 34 1 3.8262 -1.2914 2.0890 35 1 4.0737 -3.5034 1.3083 36 1 4.7097 -4.2197 -2.8492 37 1 4.2205 -1.8560 -3.3326 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:28 Heat of formation + Delta-G solvation = -10.444854 kcal Electronic energy + Delta-G solvation = -20809.531918 eV Core-core repulsion = 17547.779200 eV Total energy + Delta-G solvation = -3261.752718 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 329.049 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.02580 -39.29719 -37.50324 -32.79688 -32.69499 -31.93700 -30.28284 -28.96085 -27.23607 -26.41042 -24.84640 -22.84331 -22.32814 -21.25934 -18.66303 -17.55871 -16.74784 -16.61368 -15.83632 -15.59631 -14.69537 -14.49903 -14.23738 -13.80691 -13.70858 -13.58601 -13.20640 -12.85599 -12.31645 -12.24316 -12.01034 -11.82557 -11.41927 -11.31994 -11.03071 -10.80269 -10.72499 -10.70907 -10.49216 -10.42682 -10.30596 -10.17830 -9.59268 -9.26137 -8.96574 -8.51683 -8.41587 -7.23188 -6.02534 -4.03901 0.91272 1.15010 1.55115 3.31047 3.37959 3.40332 3.42431 4.22540 4.42357 4.61370 4.74999 4.99215 5.11657 5.20288 5.32548 5.48033 5.56900 5.73092 5.76733 5.89921 5.96293 6.00717 6.09577 6.14456 6.26594 6.34862 6.45357 6.48946 6.53848 6.75631 6.82081 6.86993 7.28931 7.38143 7.81787 8.10330 8.16827 8.55015 9.04365 9.60466 11.07745 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.004856 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.203352 B = 5764.394437 C = 7769.143972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.063 3.937 3 C -0.180 4.180 4 N -0.522 5.522 5 C 0.190 3.810 6 C -0.507 4.507 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.094 3.906 15 C -0.084 4.084 16 C -0.046 4.046 17 C -0.102 4.102 18 Br -0.052 7.052 19 C -0.074 4.074 20 C -0.152 4.152 21 C 0.114 3.886 22 F -0.126 7.126 23 H 0.059 0.941 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.061 0.939 30 H -0.001 1.001 31 H 0.036 0.964 32 H 0.261 0.739 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.610 -9.079 -15.361 19.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.046 4.046 3 C -0.238 4.238 4 N -0.246 5.246 5 C 0.065 3.935 6 C -0.546 4.546 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.197 1.197 14 C -0.034 4.034 15 C -0.087 4.087 16 C -0.066 4.066 17 C -0.181 4.181 18 Br 0.033 6.967 19 C -0.094 4.094 20 C -0.172 4.172 21 C 0.093 3.907 22 F -0.104 7.104 23 H 0.078 0.922 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.016 0.984 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.117 0.883 35 H 0.163 0.837 36 H 0.155 0.845 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.454 -10.039 -15.051 19.568 hybrid contribution 0.279 0.969 0.705 1.230 sum 7.733 -9.071 -14.346 18.652 Atomic orbital electron populations 1.21811 0.95119 1.02259 1.00491 1.21934 0.95551 0.92421 0.94667 1.22458 1.01194 0.98655 1.01542 1.62463 1.08470 1.50474 1.03229 1.19799 0.96249 0.92559 0.84846 1.21190 1.45993 0.97236 0.90187 0.91932 1.24972 0.95483 0.95062 0.98989 1.69957 1.47567 1.14006 1.22270 0.86558 0.77843 0.81082 0.82319 1.20769 1.21312 1.19743 1.20976 0.91182 0.95530 0.95701 1.20219 0.99058 0.95540 0.93854 1.20991 0.95042 0.91196 0.99371 1.21763 1.08781 0.91519 0.96073 1.96699 1.93994 1.10252 1.95740 1.20828 0.98533 0.95049 0.95022 1.21048 1.03762 0.93301 0.99070 1.17697 1.00308 0.79050 0.93600 1.91508 1.90601 1.33743 1.94586 0.92190 0.93680 0.92245 0.90864 0.92817 0.93463 0.92048 0.98361 0.94646 0.92968 0.94077 0.88325 0.83723 0.84501 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.91 37.16 0.33 -2.12 16 2 C 0.06 1.15 2.36 -67.71 -0.16 0.99 16 3 C -0.18 -3.17 7.50 37.16 0.28 -2.89 16 4 N -0.52 -10.92 4.41 -229.52 -1.01 -11.93 16 5 C 0.19 4.76 3.55 -4.98 -0.02 4.74 16 6 C -0.51 -13.82 8.39 -34.44 -0.29 -14.11 16 7 H 0.06 1.69 7.72 -52.49 -0.40 1.28 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 10 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 14 C 0.09 1.76 4.71 -4.98 -0.02 1.74 16 15 C -0.08 -1.33 5.18 -104.56 -0.54 -1.87 16 16 C -0.05 -0.66 9.41 -39.57 -0.37 -1.03 16 17 C -0.10 -1.28 6.22 -39.52 -0.25 -1.53 16 18 Br -0.05 -0.60 33.70 -68.01 -2.29 -2.89 16 19 C -0.07 -0.82 9.78 -39.57 -0.39 -1.20 16 20 C -0.15 -1.75 10.03 -39.52 -0.40 -2.15 16 21 C 0.11 1.62 5.90 -39.42 -0.23 1.39 16 22 F -0.13 -1.89 11.95 2.25 0.03 -1.87 16 23 H 0.06 1.14 6.55 -51.93 -0.34 0.80 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.07 1.27 4.34 -51.93 -0.23 1.05 16 27 H 0.05 0.94 5.32 -51.93 -0.28 0.66 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.20 6.72 -51.93 -0.35 0.85 16 30 H 0.00 -0.04 7.14 -51.93 -0.37 -0.41 16 31 H 0.04 0.95 5.95 -51.93 -0.31 0.64 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.04 0.78 6.10 -51.93 -0.32 0.46 16 34 H 0.10 1.96 7.06 -51.93 -0.37 1.60 16 35 H 0.15 2.09 8.03 -52.49 -0.42 1.67 16 36 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 315.39 15.07 4.75 4.75 Total: -1.00 -28.52 315.39 -9.59 -38.11 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.63 Total: -0.40 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.15 Total: -16.57 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.28 Total: -37.45 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.03 Total: -1.87 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.29 Total: -2.89 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.52 -9.59 -38.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.665 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds