Wall clock time and date at job start Tue Mar 31 2020 14:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47280 * 2 1 4 4 N 1.46909 * 109.46967 * 119.99737 * 2 1 3 5 5 C 1.46895 * 110.99854 * 296.21070 * 4 2 1 6 6 C 1.50702 * 109.47014 * 164.06030 * 5 4 2 7 7 H 1.07998 * 119.99780 * 355.32530 * 6 5 4 8 8 C 1.37874 * 120.00105 * 175.32539 * 6 5 4 9 9 N 1.31517 * 119.99888 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99990 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47207 * 90.00024 * 10 8 6 12 12 H 1.48503 * 109.47277 * 210.00177 * 10 8 6 13 13 H 1.48495 * 109.47403 * 330.00056 * 10 8 6 14 14 C 1.46894 * 111.00007 * 172.25205 * 4 2 1 15 15 C 1.50705 * 109.47366 * 293.95632 * 14 4 2 16 16 C 1.38209 * 120.01093 * 259.72549 * 15 14 4 17 17 C 1.38299 * 120.01830 * 179.76887 * 16 15 14 18 18 Br 1.89105 * 119.98508 * 180.27619 * 17 16 15 19 19 C 1.38346 * 120.03034 * 0.50241 * 17 16 15 20 20 C 1.38169 * 120.01895 * 359.74818 * 19 17 16 21 21 C 1.38441 * 120.00842 * 79.99374 * 15 14 4 22 22 F 1.35095 * 120.01329 * 0.02562 * 21 15 14 23 23 H 1.09003 * 109.47327 * 307.49805 * 1 2 3 24 24 H 1.08996 * 109.47108 * 67.49461 * 1 2 3 25 25 H 1.08996 * 109.47798 * 187.49787 * 1 2 3 26 26 H 1.08996 * 109.47037 * 239.99512 * 2 1 3 27 27 H 1.09004 * 109.46986 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46843 * 299.99543 * 3 2 1 29 29 H 1.09000 * 109.47180 * 60.00184 * 3 2 1 30 30 H 1.09004 * 109.47095 * 284.05512 * 5 4 2 31 31 H 1.08993 * 109.47479 * 44.05710 * 5 4 2 32 32 H 0.97005 * 119.99914 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.47344 * 53.95034 * 14 4 2 34 34 H 1.08999 * 109.47178 * 173.95489 * 14 4 2 35 35 H 1.08001 * 119.98841 * 359.97438 * 16 15 14 36 36 H 1.08006 * 119.99404 * 179.72924 * 19 17 16 37 37 H 1.07996 * 120.01294 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 1.6240 0.0240 2.4194 6 6 1.7877 -0.8841 3.6108 7 1 2.0768 -1.9149 3.4684 8 6 1.5684 -0.3991 4.8826 9 7 1.2158 0.8560 5.0560 10 14 1.7705 -1.5250 6.3594 11 1 3.1726 -1.4587 6.8442 12 1 0.8513 -1.0913 7.4421 13 1 1.4483 -2.9202 5.9660 14 6 3.4763 -0.8743 1.1447 15 6 3.8230 -1.8160 0.0204 16 6 4.1031 -3.1421 0.2909 17 6 4.4166 -4.0076 -0.7413 18 35 4.7920 -5.8236 -0.3709 19 6 4.4604 -3.5443 -2.0441 20 6 4.1858 -2.2176 -2.3156 21 6 3.8666 -1.3517 -1.2831 22 9 3.5989 -0.0543 -1.5476 23 1 -0.3634 0.6256 0.8153 24 1 -0.3633 0.3933 -0.9494 25 1 -0.3634 -1.0188 0.1341 26 1 1.8933 -0.5139 -0.8899 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.2545 0.9044 2.5443 31 1 0.5818 0.3322 2.3379 32 1 1.0619 1.1974 5.9509 33 1 3.9565 0.0890 0.9728 34 1 3.8262 -1.2914 2.0890 35 1 4.0737 -3.5034 1.3083 36 1 4.7097 -4.2197 -2.8492 37 1 4.2205 -1.8560 -3.3326 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:27 Heat of formation + Delta-G solvation = -25.956179 kcal Electronic energy + Delta-G solvation = -20810.204540 eV Core-core repulsion = 17547.779200 eV Total energy + Delta-G solvation = -3262.425340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 329.049 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.14930 -40.46359 -38.99223 -34.88602 -33.92179 -32.95008 -31.84247 -30.05210 -28.88635 -27.99120 -26.40180 -24.32327 -23.78355 -22.43806 -20.24146 -18.75676 -18.55652 -17.74527 -17.30753 -16.77202 -16.53740 -15.96266 -15.43565 -15.34835 -15.08979 -14.90217 -14.42129 -14.10045 -13.96326 -13.83209 -13.51832 -13.16952 -12.93502 -12.87872 -12.64991 -12.49376 -12.21768 -12.08571 -12.03836 -11.98867 -11.66378 -11.28913 -11.26923 -11.20147 -10.57112 -10.06358 -9.56004 -8.95795 -8.17316 -6.26792 -0.12850 0.12709 0.58270 1.40826 1.41829 1.53242 2.35108 2.41971 3.14762 3.18134 3.36333 3.57581 3.74077 4.02990 4.08435 4.11419 4.25496 4.36003 4.47567 4.62982 4.74830 4.76912 4.83928 4.88858 4.93173 5.01836 5.04183 5.08639 5.17834 5.23614 5.35198 5.37195 5.45481 5.68538 5.71271 6.11499 6.34840 6.66498 6.89863 7.42627 8.92818 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.004856 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.203352 B = 5764.394437 C = 7769.143972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.061 3.939 3 C -0.170 4.170 4 N -0.529 5.529 5 C 0.210 3.790 6 C -0.520 4.520 7 H 0.061 0.939 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.100 3.900 15 C -0.104 4.104 16 C -0.057 4.057 17 C -0.105 4.105 18 Br -0.039 7.039 19 C -0.059 4.059 20 C -0.137 4.137 21 C 0.101 3.899 22 F -0.133 7.133 23 H 0.035 0.965 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.031 0.969 30 H -0.032 1.032 31 H 0.013 0.987 32 H 0.263 0.737 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.172 0.828 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.294 -10.896 -17.508 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.047 4.047 3 C -0.229 4.229 4 N -0.252 5.252 5 C 0.084 3.916 6 C -0.559 4.559 7 H 0.079 0.921 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.189 1.189 14 C -0.027 4.027 15 C -0.107 4.107 16 C -0.077 4.077 17 C -0.184 4.184 18 Br 0.046 6.954 19 C -0.079 4.079 20 C -0.156 4.156 21 C 0.081 3.919 22 F -0.111 7.111 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.072 0.928 26 H 0.110 0.890 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.050 0.950 30 H -0.015 1.015 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.190 0.810 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.147 -11.868 -17.217 22.442 hybrid contribution 0.105 1.485 1.282 1.964 sum 8.252 -10.384 -15.935 20.733 Atomic orbital electron populations 1.21787 0.94588 1.01574 1.01336 1.22070 0.96006 0.92688 0.93962 1.22350 1.00968 0.98223 1.01327 1.62380 1.10164 1.50038 1.02664 1.19374 0.94227 0.91417 0.86552 1.21501 1.45653 0.97407 0.91297 0.92091 1.25833 0.95059 0.96479 1.02001 1.70087 1.48595 1.15810 1.23003 0.85490 0.78068 0.79228 0.78515 1.19884 1.20942 1.18934 1.20791 0.89614 0.95958 0.96370 1.19897 1.01663 0.95523 0.93585 1.20918 0.95967 0.91145 0.99713 1.21894 1.08267 0.91936 0.96353 1.96718 1.93851 1.08942 1.95875 1.21259 0.96286 0.95326 0.95038 1.21396 1.01623 0.92809 0.99763 1.17872 1.01161 0.79212 0.93638 1.91480 1.90764 1.34353 1.94545 0.94569 0.90367 0.92838 0.89003 0.93024 0.90813 0.94951 1.01460 0.96951 0.92841 0.94946 0.90536 0.84759 0.81043 0.80819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 8.91 71.98 0.64 -4.11 16 2 C 0.06 2.24 2.36 44.91 0.11 2.34 16 3 C -0.17 -6.08 7.50 71.98 0.54 -5.54 16 4 N -0.53 -22.89 4.41 -880.07 -3.88 -26.77 16 5 C 0.21 11.12 3.55 85.56 0.30 11.42 16 6 C -0.52 -29.38 8.39 25.60 0.21 -29.16 16 7 H 0.06 3.39 7.72 -2.91 -0.02 3.36 16 8 C 0.00 0.24 5.46 84.65 0.46 0.70 16 9 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 10 Si 0.96 44.46 29.54 68.60 2.03 46.48 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 14 C 0.10 3.93 4.71 85.56 0.40 4.33 16 15 C -0.10 -3.27 5.18 -19.82 -0.10 -3.37 16 16 C -0.06 -1.62 9.41 22.28 0.21 -1.41 16 17 C -0.10 -2.40 6.22 22.31 0.14 -2.26 16 18 Br -0.04 -0.81 33.70 -20.37 -0.69 -1.50 16 19 C -0.06 -1.07 9.78 22.28 0.22 -0.85 16 20 C -0.14 -2.62 10.03 22.31 0.22 -2.39 16 21 C 0.10 2.71 5.90 22.38 0.13 2.84 16 22 F -0.13 -3.78 11.95 44.97 0.54 -3.24 16 23 H 0.04 1.42 6.55 -2.39 -0.02 1.40 16 24 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.09 3.08 4.34 -2.39 -0.01 3.07 16 27 H 0.05 1.84 5.32 -2.38 -0.01 1.83 16 28 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.03 1.32 6.72 -2.39 -0.02 1.30 16 30 H -0.03 -1.88 7.14 -2.38 -0.02 -1.89 16 31 H 0.01 0.71 5.95 -2.39 -0.01 0.70 16 32 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 33 H 0.03 1.30 6.10 -2.39 -0.01 1.28 16 34 H 0.08 3.25 7.06 -2.39 -0.02 3.23 16 35 H 0.13 3.99 8.03 -2.91 -0.02 3.96 16 36 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 37 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -63.47 315.39 2.86 -60.61 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.08 Total: 7.98 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 3.49 Total: -27.47 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -3.60 Total: -82.87 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.54 Total: -3.24 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 35 Polarization: -0.81 SS G_CDS: -0.69 Total: -1.50 kcal Total: -63.47 2.86 -60.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.656 kcal (2) G-P(sol) polarization free energy of solvation -63.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds