Wall clock time and date at job start Tue Mar 31 2020 15:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46592 * 2 1 4 4 C 1.52997 * 109.47478 * 240.00455 * 2 1 3 5 5 C 1.50701 * 109.47307 * 174.99474 * 4 2 1 6 6 H 1.07992 * 119.99815 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99941 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00034 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99983 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47556 * 89.99607 * 9 7 5 11 11 H 1.48502 * 109.46969 * 210.00142 * 9 7 5 12 12 H 1.48512 * 109.46921 * 329.99642 * 9 7 5 13 13 N 1.46892 * 109.47345 * 120.00140 * 2 1 3 14 14 C 1.46899 * 111.00056 * 58.95484 * 13 2 1 15 15 C 1.46908 * 111.00228 * 295.00199 * 13 2 1 16 16 C 1.50695 * 109.47358 * 189.99941 * 15 13 2 17 17 C 1.38251 * 119.97515 * 259.72574 * 16 15 13 18 18 C 1.38186 * 120.02977 * 180.27508 * 17 16 15 19 19 C 1.38488 * 119.99711 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.01817 * 179.97438 * 19 18 17 21 21 C 1.38414 * 119.95696 * 359.97438 * 19 18 17 22 22 C 1.38302 * 119.96835 * 359.97438 * 21 19 18 23 23 Br 1.89103 * 120.00047 * 180.02562 * 22 21 19 24 24 H 1.08992 * 109.47214 * 299.99533 * 1 2 3 25 25 H 1.09003 * 109.47315 * 60.00029 * 1 2 3 26 26 H 1.09001 * 109.46703 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47113 * 294.99808 * 4 2 1 28 28 H 1.09003 * 109.47337 * 54.99501 * 4 2 1 29 29 H 0.96997 * 120.00223 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.47261 * 296.05037 * 14 13 2 31 31 H 1.09000 * 109.46821 * 56.04737 * 14 13 2 32 32 H 1.09001 * 109.47377 * 176.04668 * 14 13 2 33 33 H 1.09005 * 109.46449 * 69.99766 * 15 13 2 34 34 H 1.09001 * 109.46884 * 310.00276 * 15 13 2 35 35 H 1.07993 * 119.98865 * 0.25399 * 17 16 15 36 36 H 1.08007 * 120.00072 * 179.97438 * 18 17 16 37 37 H 1.08002 * 120.01485 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5420 -0.6146 -1.3127 6 1 4.0789 -0.0859 -0.5392 7 6 4.2305 -1.1932 -2.3579 8 7 3.5766 -1.8375 -3.2996 9 14 6.0922 -1.0618 -2.4362 10 1 6.7003 -2.2143 -1.7241 11 1 6.5297 -1.0699 -3.8553 12 1 6.5267 0.2036 -1.7915 13 7 2.0197 -0.6925 1.1993 14 6 1.5284 -2.0761 1.2458 15 6 1.6487 0.0391 2.4181 16 6 2.3679 -0.5572 3.6005 17 6 1.7056 -1.4303 4.4433 18 6 2.3623 -1.9733 5.5312 19 6 3.6843 -1.6425 5.7777 20 9 4.3266 -2.1727 6.8415 21 6 4.3471 -0.7683 4.9337 22 6 3.6886 -0.2266 3.8448 23 35 4.5933 0.9672 2.6906 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7518 -1.7714 -1.2057 28 1 1.6054 -0.2616 -2.1370 29 1 4.0609 -2.2441 -4.0350 30 1 0.4421 -2.0731 1.3346 31 1 1.8168 -2.5949 0.3317 32 1 1.9618 -2.5869 2.1057 33 1 0.5722 -0.0347 2.5725 34 1 1.9297 1.0870 2.3125 35 1 0.6745 -1.6878 4.2517 36 1 1.8444 -2.6551 6.1896 37 1 5.3782 -0.5100 5.1249 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411629026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:57 Heat of formation + Delta-G solvation = -14.082252 kcal Electronic energy + Delta-G solvation = -20444.938318 eV Core-core repulsion = 17183.027870 eV Total energy + Delta-G solvation = -3261.910448 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 329.049 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.01517 -39.57176 -37.51948 -33.18980 -32.36827 -31.80323 -29.85676 -29.13551 -27.46633 -26.56722 -24.18592 -22.96282 -22.75370 -21.05162 -18.73134 -17.61260 -16.69569 -16.14773 -15.87295 -15.72984 -15.45751 -14.44431 -14.24748 -14.12989 -13.64432 -13.55431 -13.29776 -12.93493 -12.70971 -12.21372 -11.80901 -11.65882 -11.51437 -11.39967 -11.15176 -10.91102 -10.71117 -10.65776 -10.56135 -10.38422 -9.94115 -9.81921 -9.17440 -8.97222 -8.94632 -8.54098 -8.21716 -7.48857 -5.85419 -3.82032 0.90060 1.00217 1.77919 3.32349 3.41871 3.47824 3.52018 4.13057 4.51558 4.59809 4.67406 4.76419 4.84718 5.10945 5.36839 5.50868 5.54641 5.67076 5.75324 5.80054 5.88342 5.93156 5.96863 6.00271 6.04304 6.14489 6.29016 6.47970 6.63711 6.64698 6.75729 6.97951 7.53197 7.67204 7.90733 8.00991 8.16796 8.62064 9.25437 9.79792 11.26813 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.013769 B = 0.005367 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.136245 B = 5216.021134 C = 6012.266399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.088 3.912 3 H 0.071 0.929 4 C 0.029 3.971 5 C -0.486 4.486 6 H 0.065 0.935 7 C 0.051 3.949 8 N -0.906 5.906 9 Si 0.884 3.116 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.500 5.500 14 C 0.022 3.978 15 C 0.081 3.919 16 C -0.049 4.049 17 C -0.082 4.082 18 C -0.143 4.143 19 C 0.096 3.904 20 F -0.139 7.139 21 C -0.131 4.131 22 C -0.043 4.043 23 Br -0.014 7.014 24 H 0.039 0.961 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.020 0.980 28 H 0.018 0.982 29 H 0.256 0.744 30 H 0.015 0.985 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 3.494 17.725 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.019 4.019 3 H 0.089 0.911 4 C -0.008 4.008 5 C -0.524 4.524 6 H 0.084 0.916 7 C -0.148 4.148 8 N -0.547 5.547 9 Si 0.713 3.287 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.222 5.222 14 C -0.126 4.126 15 C -0.047 4.047 16 C -0.052 4.052 17 C -0.102 4.102 18 C -0.162 4.162 19 C 0.075 3.925 20 F -0.118 7.118 21 C -0.152 4.152 22 C -0.124 4.124 23 Br 0.072 6.928 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.036 0.964 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.778 3.837 17.116 17.759 hybrid contribution 0.131 -0.504 0.399 0.656 sum -2.647 3.332 17.516 18.025 Atomic orbital electron populations 1.22542 0.99882 1.01323 1.00695 1.21939 0.89875 0.98575 0.91529 0.91051 1.19233 0.96522 0.95355 0.89680 1.21222 0.91679 1.32666 1.06868 0.91641 1.24974 0.97714 0.96024 0.96076 1.69958 1.35081 1.37208 1.12440 0.86710 0.86879 0.78436 0.76674 1.20919 1.21725 1.20005 1.62143 1.58810 1.01488 0.99771 1.22449 0.96139 0.90793 1.03180 1.21211 0.96094 0.98794 0.88616 1.19910 0.92588 0.96327 0.96381 1.20923 1.00299 0.95638 0.93322 1.21171 0.93221 1.02186 0.99641 1.17507 0.91347 0.97116 0.86494 1.91500 1.81741 1.84786 1.53727 1.21049 1.01141 0.98324 0.94638 1.21556 0.94926 1.00209 0.95675 1.96835 1.75549 1.57603 1.62799 0.94189 0.92503 0.92859 0.96168 0.96379 0.93433 0.96635 0.89600 0.92929 0.94146 0.89422 0.84533 0.84465 0.84019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.00 8.50 37.16 0.32 -2.68 16 2 C 0.09 1.70 2.29 -67.72 -0.16 1.55 16 3 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 4 C 0.03 0.71 4.27 -27.88 -0.12 0.59 16 5 C -0.49 -13.26 8.84 -34.44 -0.30 -13.56 16 6 H 0.07 1.78 7.74 -52.49 -0.41 1.38 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.91 -27.10 13.29 55.43 0.74 -26.36 16 9 Si 0.88 22.19 29.54 -169.99 -5.02 17.17 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.50 -8.85 4.46 -236.33 -1.05 -9.90 16 14 C 0.02 0.38 8.48 60.06 0.51 0.89 16 15 C 0.08 1.16 3.85 -4.97 -0.02 1.15 16 16 C -0.05 -0.67 4.57 -104.59 -0.48 -1.15 16 17 C -0.08 -0.93 8.75 -39.60 -0.35 -1.27 16 18 C -0.14 -1.54 10.03 -39.51 -0.40 -1.93 16 19 C 0.10 1.17 7.30 -39.42 -0.29 0.88 16 20 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 21 C -0.13 -1.68 9.77 -39.49 -0.39 -2.07 16 22 C -0.04 -0.61 6.22 -39.53 -0.25 -0.86 16 23 Br -0.01 -0.22 32.01 -68.01 -2.18 -2.40 16 24 H 0.04 0.56 6.75 -51.93 -0.35 0.21 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.86 6.48 -51.93 -0.34 0.52 16 27 H 0.02 0.52 6.09 -51.93 -0.32 0.21 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.02 0.23 6.51 -51.93 -0.34 -0.11 16 31 H 0.09 1.72 6.03 -51.93 -0.31 1.41 16 32 H 0.05 0.83 6.66 -51.93 -0.35 0.49 16 33 H 0.04 0.52 6.79 -51.93 -0.35 0.17 16 34 H 0.09 1.28 7.01 -51.93 -0.36 0.92 16 35 H 0.14 1.26 8.03 -52.49 -0.42 0.84 16 36 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 323.03 15.07 4.87 4.87 Total: -1.00 -29.43 323.03 -9.41 -38.84 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -4.79 Total: -3.44 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -2.01 Total: -17.11 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.32 Total: -36.26 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -2.18 Total: -2.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.43 -9.41 -38.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411629026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.758 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds