Wall clock time and date at job start Tue Mar 31 2020 15:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46592 * 2 1 4 4 C 1.52997 * 109.47478 * 240.00455 * 2 1 3 5 5 C 1.50701 * 109.47307 * 174.99474 * 4 2 1 6 6 H 1.07992 * 119.99815 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99941 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00034 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99983 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47556 * 89.99607 * 9 7 5 11 11 H 1.48502 * 109.46969 * 210.00142 * 9 7 5 12 12 H 1.48512 * 109.46921 * 329.99642 * 9 7 5 13 13 N 1.46892 * 109.47345 * 120.00140 * 2 1 3 14 14 C 1.46899 * 111.00056 * 58.95484 * 13 2 1 15 15 C 1.46908 * 111.00228 * 295.00199 * 13 2 1 16 16 C 1.50695 * 109.47358 * 189.99941 * 15 13 2 17 17 C 1.38251 * 119.97515 * 259.72574 * 16 15 13 18 18 C 1.38186 * 120.02977 * 180.27508 * 17 16 15 19 19 C 1.38488 * 119.99711 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.01817 * 179.97438 * 19 18 17 21 21 C 1.38414 * 119.95696 * 359.97438 * 19 18 17 22 22 C 1.38302 * 119.96835 * 359.97438 * 21 19 18 23 23 Br 1.89103 * 120.00047 * 180.02562 * 22 21 19 24 24 H 1.08992 * 109.47214 * 299.99533 * 1 2 3 25 25 H 1.09003 * 109.47315 * 60.00029 * 1 2 3 26 26 H 1.09001 * 109.46703 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47113 * 294.99808 * 4 2 1 28 28 H 1.09003 * 109.47337 * 54.99501 * 4 2 1 29 29 H 0.96997 * 120.00223 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.47261 * 296.05037 * 14 13 2 31 31 H 1.09000 * 109.46821 * 56.04737 * 14 13 2 32 32 H 1.09001 * 109.47377 * 176.04668 * 14 13 2 33 33 H 1.09005 * 109.46449 * 69.99766 * 15 13 2 34 34 H 1.09001 * 109.46884 * 310.00276 * 15 13 2 35 35 H 1.07993 * 119.98865 * 0.25399 * 17 16 15 36 36 H 1.08007 * 120.00072 * 179.97438 * 18 17 16 37 37 H 1.08002 * 120.01485 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5420 -0.6146 -1.3127 6 1 4.0789 -0.0859 -0.5392 7 6 4.2305 -1.1932 -2.3579 8 7 3.5766 -1.8375 -3.2996 9 14 6.0922 -1.0618 -2.4362 10 1 6.7003 -2.2143 -1.7241 11 1 6.5297 -1.0699 -3.8553 12 1 6.5267 0.2036 -1.7915 13 7 2.0197 -0.6925 1.1993 14 6 1.5284 -2.0761 1.2458 15 6 1.6487 0.0391 2.4181 16 6 2.3679 -0.5572 3.6005 17 6 1.7056 -1.4303 4.4433 18 6 2.3623 -1.9733 5.5312 19 6 3.6843 -1.6425 5.7777 20 9 4.3266 -2.1727 6.8415 21 6 4.3471 -0.7683 4.9337 22 6 3.6886 -0.2266 3.8448 23 35 4.5933 0.9672 2.6906 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7518 -1.7714 -1.2057 28 1 1.6054 -0.2616 -2.1370 29 1 4.0609 -2.2441 -4.0350 30 1 0.4421 -2.0731 1.3346 31 1 1.8168 -2.5949 0.3317 32 1 1.9618 -2.5869 2.1057 33 1 0.5722 -0.0347 2.5725 34 1 1.9297 1.0870 2.3125 35 1 0.6745 -1.6878 4.2517 36 1 1.8444 -2.6551 6.1896 37 1 5.3782 -0.5100 5.1249 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411629026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:56 Heat of formation + Delta-G solvation = -30.057570 kcal Electronic energy + Delta-G solvation = -20445.631060 eV Core-core repulsion = 17183.027870 eV Total energy + Delta-G solvation = -3262.603190 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 329.049 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.95810 -40.61479 -38.85559 -35.03129 -33.52333 -33.16267 -31.14237 -30.23642 -29.21558 -27.83093 -25.62792 -24.52677 -23.86851 -22.16792 -20.25349 -18.54726 -18.28227 -17.66153 -17.09379 -16.83378 -16.61078 -16.36544 -15.44877 -15.24917 -14.74363 -14.62645 -14.52992 -14.28054 -13.93485 -13.83418 -13.54737 -13.09359 -12.87904 -12.72900 -12.62099 -12.45845 -12.27102 -12.14805 -11.99704 -11.71156 -11.64724 -11.05869 -10.96204 -10.94056 -10.41687 -9.93279 -9.57481 -8.80548 -8.05036 -6.06507 -0.05541 0.06385 0.72313 1.40631 1.42086 1.51623 2.36836 2.49744 3.19956 3.26191 3.38920 3.69253 3.77530 3.94155 4.15747 4.30590 4.37797 4.46563 4.51209 4.57715 4.68268 4.78441 4.82909 4.91220 4.97645 5.06308 5.08760 5.22208 5.29512 5.33305 5.38187 5.58697 5.73456 5.80270 5.98001 6.39467 6.49044 6.59577 7.09032 7.58624 9.07274 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.013769 B = 0.005367 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.136245 B = 5216.021134 C = 6012.266399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.099 3.901 3 H 0.063 0.937 4 C 0.035 3.965 5 C -0.486 4.486 6 H 0.063 0.937 7 C -0.002 4.002 8 N -0.941 5.941 9 Si 0.940 3.060 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.268 1.268 13 N -0.520 5.520 14 C 0.031 3.969 15 C 0.086 3.914 16 C -0.063 4.063 17 C -0.074 4.074 18 C -0.131 4.131 19 C 0.090 3.910 20 F -0.141 7.141 21 C -0.139 4.139 22 C -0.057 4.057 23 Br -0.039 7.039 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.001 0.999 28 H -0.010 1.010 29 H 0.256 0.744 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.640 3.292 19.929 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.009 4.009 3 H 0.081 0.919 4 C -0.003 4.003 5 C -0.524 4.524 6 H 0.082 0.918 7 C -0.197 4.197 8 N -0.584 5.584 9 Si 0.767 3.233 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.192 1.192 13 N -0.243 5.243 14 C -0.117 4.117 15 C -0.041 4.041 16 C -0.065 4.065 17 C -0.094 4.094 18 C -0.150 4.150 19 C 0.069 3.931 20 F -0.119 7.119 21 C -0.160 4.160 22 C -0.138 4.138 23 Br 0.047 6.953 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.019 0.981 28 H 0.008 0.992 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.183 0.817 36 H 0.186 0.814 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.712 3.644 19.341 20.029 hybrid contribution 0.402 -0.470 -0.197 0.649 sum -3.310 3.175 19.144 19.686 Atomic orbital electron populations 1.22405 0.97140 1.01800 1.02076 1.21577 0.91984 0.97197 0.90150 0.91885 1.19095 0.95089 0.94600 0.91470 1.21555 0.93292 1.31390 1.06183 0.91840 1.25705 1.01754 0.96176 0.96105 1.70075 1.36587 1.38572 1.13178 0.85813 0.82204 0.78567 0.76681 1.20694 1.21446 1.19247 1.61964 1.59879 1.01958 1.00463 1.22307 0.97608 0.90159 1.01606 1.21175 0.97561 0.98109 0.87265 1.19948 0.92428 0.97406 0.96746 1.21208 1.01388 0.94248 0.92514 1.21506 0.92442 1.01602 0.99480 1.17662 0.92036 0.97027 0.86329 1.91500 1.81927 1.84752 1.53746 1.21128 1.01585 0.98628 0.94609 1.21584 0.95423 1.00773 0.96015 1.96804 1.76199 1.58594 1.63695 0.91154 0.92783 0.92764 0.98068 0.99204 0.93564 0.94295 0.93543 0.91689 0.91721 0.89949 0.81718 0.81433 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.32 8.50 71.98 0.61 -4.71 16 2 C 0.10 3.76 2.29 44.92 0.10 3.86 16 3 H 0.06 2.49 8.03 -2.38 -0.02 2.47 16 4 C 0.03 1.73 4.27 29.85 0.13 1.86 16 5 C -0.49 -26.96 8.84 25.60 0.23 -26.74 16 6 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 7 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 8 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 9 Si 0.94 46.06 29.54 68.60 2.03 48.09 16 10 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 12 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 13 N -0.52 -17.72 4.46 -901.62 -4.02 -21.74 16 14 C 0.03 1.01 8.48 127.69 1.08 2.09 16 15 C 0.09 2.27 3.85 85.55 0.33 2.60 16 16 C -0.06 -1.54 4.57 -19.84 -0.09 -1.63 16 17 C -0.07 -1.38 8.75 22.26 0.19 -1.18 16 18 C -0.13 -2.31 10.03 22.32 0.22 -2.09 16 19 C 0.09 1.96 7.30 22.37 0.16 2.12 16 20 F -0.14 -3.15 17.27 44.97 0.78 -2.37 16 21 C -0.14 -3.37 9.77 22.33 0.22 -3.16 16 22 C -0.06 -1.55 6.22 22.30 0.14 -1.41 16 23 Br -0.04 -1.20 32.01 -20.37 -0.65 -1.85 16 24 H 0.07 1.71 6.75 -2.39 -0.02 1.70 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.05 1.63 6.48 -2.39 -0.02 1.61 16 27 H 0.00 0.06 6.09 -2.39 -0.01 0.05 16 28 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.04 1.06 6.51 -2.39 -0.02 1.05 16 31 H 0.05 1.87 6.03 -2.39 -0.01 1.86 16 32 H 0.06 1.91 6.66 -2.39 -0.02 1.90 16 33 H 0.06 1.40 6.79 -2.38 -0.02 1.38 16 34 H 0.08 2.26 7.01 -2.39 -0.02 2.25 16 35 H 0.17 2.13 8.03 -2.91 -0.02 2.11 16 36 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -64.34 323.03 3.28 -61.05 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 1.07 Total: 2.19 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 3.79 Total: -28.02 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -3.73 Total: -79.08 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.78 Total: -2.37 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 35 Polarization: -1.20 SS G_CDS: -0.65 Total: -1.85 kcal Total: -64.34 3.28 -61.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411629026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.995 kcal (2) G-P(sol) polarization free energy of solvation -64.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds