Wall clock time and date at job start Tue Mar 31 2020 15:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46943 * 2 1 4 4 N 1.46495 * 109.47529 * 239.99476 * 2 1 3 5 5 S 1.65600 * 119.99806 * 95.82093 * 4 2 1 6 6 O 1.42101 * 106.40201 * 48.02968 * 5 4 2 7 7 O 1.42101 * 106.40066 * 180.95281 * 5 4 2 8 8 C 1.76208 * 107.21788 * 294.48816 * 5 4 2 9 9 C 1.38633 * 119.75076 * 115.49838 * 8 5 4 10 10 C 1.37608 * 120.25829 * 179.76274 * 9 8 5 11 11 C 1.40740 * 119.77203 * 0.51065 * 10 9 8 12 12 C 1.41396 * 120.23788 * 179.76345 * 11 10 9 13 13 H 1.07999 * 120.00304 * 28.38646 * 12 11 10 14 14 C 1.39941 * 120.00036 * 208.38029 * 12 11 10 15 15 N 1.30832 * 120.00082 * 11.57811 * 14 12 11 16 16 Si 1.86802 * 120.00309 * 191.57438 * 14 12 11 17 17 H 1.48495 * 109.47059 * 59.99698 * 16 14 12 18 18 H 1.48496 * 109.47357 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46621 * 300.00426 * 16 14 12 20 20 C 1.40678 * 119.52156 * 359.74656 * 11 10 9 21 21 C 1.37752 * 119.73400 * 359.97438 * 20 11 10 22 22 Cl 1.73602 * 119.88650 * 179.97438 * 21 20 11 23 23 C 1.53006 * 109.46786 * 119.99592 * 2 1 3 24 24 C 1.52999 * 117.49858 * 231.37864 * 23 2 1 25 25 C 1.52997 * 117.49833 * 300.00077 * 23 2 1 26 26 H 1.09001 * 109.46891 * 60.00129 * 1 2 3 27 27 H 1.09003 * 109.47123 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47437 * 300.00637 * 1 2 3 29 29 H 0.96999 * 120.00323 * 275.82729 * 4 2 1 30 30 H 1.07996 * 119.87585 * 0.02562 * 9 8 5 31 31 H 1.08007 * 120.11495 * 180.23086 * 10 9 8 32 32 H 0.96995 * 120.00120 * 180.02562 * 15 14 12 33 33 H 1.08004 * 120.13323 * 180.02562 * 20 11 10 34 34 H 1.09007 * 115.56127 * 85.68902 * 23 2 1 35 35 H 1.09000 * 117.49725 * 214.98354 * 24 23 2 36 36 H 1.09001 * 117.49634 * 0.02562 * 24 23 2 37 37 H 1.08991 * 117.50152 * 0.02562 * 25 23 2 38 38 H 1.09001 * 117.49514 * 145.02235 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1960 5 16 2.4316 0.1788 -2.5435 6 8 3.2627 1.2411 -2.0963 7 8 2.8388 -0.7675 -3.5223 8 6 0.9570 0.9244 -3.1556 9 6 0.8352 2.3053 -3.1604 10 6 -0.3098 2.8987 -3.6405 11 6 -1.3643 2.0983 -4.1181 12 6 -2.5471 2.6975 -4.6090 13 1 -2.5110 3.6836 -5.0481 14 6 -3.7648 2.0129 -4.5260 15 7 -3.8574 0.9285 -3.7999 16 14 -5.2581 2.6473 -5.4518 17 1 -4.9623 2.6781 -6.9066 18 1 -6.4145 1.7503 -5.2001 19 1 -5.5847 4.0184 -4.9840 20 6 -1.2328 0.6978 -4.1039 21 6 -0.0754 0.1250 -3.6242 22 17 0.0908 -1.6029 -3.6042 23 6 2.0400 -0.7212 1.2494 24 6 3.0740 0.0053 2.1118 25 6 1.6356 -0.1494 2.6096 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.0997 -1.6572 -1.1988 30 1 1.6437 2.9180 -2.7898 31 1 -0.4007 3.9750 -3.6466 32 1 -4.7013 0.4538 -3.7427 33 1 -2.0356 0.0741 -4.4684 34 1 2.1270 -1.8045 1.1645 35 1 3.8415 -0.6000 2.5943 36 1 3.3908 0.9971 1.7893 37 1 1.0060 0.7403 2.6146 38 1 1.4567 -0.8564 3.4197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451008607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:59 Heat of formation + Delta-G solvation = -53.951275 kcal Electronic energy + Delta-G solvation = -24199.171346 eV Core-core repulsion = 20580.339815 eV Total energy + Delta-G solvation = -3618.831531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.064 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.23686 -37.86472 -36.47292 -35.61410 -35.10666 -34.26890 -34.07011 -30.33071 -29.48017 -29.15551 -26.01865 -23.84493 -22.26885 -21.74815 -21.34729 -20.33107 -18.87446 -17.83045 -17.18135 -16.74832 -16.31328 -15.59634 -14.96794 -14.52074 -14.32943 -14.08805 -13.70297 -13.40978 -13.25234 -12.74614 -12.72997 -12.47304 -12.24655 -11.99834 -11.62674 -11.55577 -11.48006 -11.38593 -11.30294 -11.19606 -11.15894 -10.68884 -10.57140 -10.49340 -10.42105 -10.37673 -10.09317 -10.07423 -9.67569 -9.59914 -9.00074 -8.06876 -7.72848 -7.21280 -4.95888 1.24341 2.02893 2.63849 2.83101 2.85104 2.87665 3.00044 3.59338 3.61419 3.87380 4.10920 4.50246 4.64433 4.93397 4.97246 5.13357 5.25247 5.30995 5.40425 5.62520 5.69356 5.79839 5.87532 5.93770 6.06833 6.12541 6.20826 6.37406 6.51850 6.57552 6.67231 6.68924 6.80342 6.98893 7.15961 7.31532 7.42002 7.57472 7.76128 8.08228 8.34739 8.39758 9.68430 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.015834 B = 0.004356 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.933280 B = 6425.658431 C = 6877.921868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.185 3.815 3 H 0.089 0.911 4 N -1.113 6.113 5 S 2.697 3.303 6 O -0.987 6.987 7 O -0.971 6.971 8 C -0.787 4.787 9 C 0.008 3.992 10 C -0.234 4.234 11 C 0.145 3.855 12 C -0.428 4.428 13 H 0.091 0.909 14 C 0.069 3.931 15 N -0.767 5.767 16 Si 0.922 3.078 17 H -0.259 1.259 18 H -0.273 1.273 19 H -0.261 1.261 20 C -0.164 4.164 21 C 0.077 3.923 22 Cl -0.102 7.102 23 C -0.153 4.153 24 C -0.181 4.181 25 C -0.175 4.175 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.410 0.590 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.292 0.708 33 H 0.135 0.865 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 -2.365 7.810 8.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.078 3.922 3 H 0.107 0.893 4 N -0.869 5.869 5 S 2.793 3.207 6 O -0.977 6.977 7 O -0.961 6.961 8 C -0.882 4.882 9 C -0.012 4.012 10 C -0.254 4.254 11 C 0.140 3.860 12 C -0.455 4.455 13 H 0.109 0.891 14 C -0.153 4.153 15 N -0.389 5.389 16 Si 0.745 3.255 17 H -0.183 1.183 18 H -0.198 1.198 19 H -0.185 1.185 20 C -0.184 4.184 21 C 0.049 3.951 22 Cl -0.073 7.073 23 C -0.173 4.173 24 C -0.218 4.218 25 C -0.212 4.212 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.244 0.756 30 H 0.135 0.865 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.153 0.847 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.605 -2.455 7.563 8.730 hybrid contribution -1.552 -0.280 -0.288 1.603 sum 2.053 -2.734 7.275 8.039 Atomic orbital electron populations 1.22308 0.94614 1.02865 1.03114 1.20213 0.94063 0.95397 0.82554 0.89339 1.55654 1.84114 1.19048 1.28102 1.01218 0.74337 0.72881 0.72288 1.93471 1.65790 1.56631 1.81802 1.93549 1.82005 1.62380 1.58192 1.29122 1.21820 1.03136 1.34114 1.20202 0.96336 0.91301 0.93405 1.21150 0.96229 0.98549 1.09499 1.17727 0.91698 0.91012 0.85521 1.19925 0.91275 1.02862 1.31434 0.89076 1.26155 1.01601 0.94002 0.93555 1.69757 1.28501 1.13599 1.27048 0.86112 0.78761 0.79907 0.80746 1.18306 1.19807 1.18481 1.21314 0.95817 0.95583 1.05729 1.20016 0.95067 0.81034 0.98970 1.98316 1.97637 1.14186 1.97200 1.22511 1.03956 0.99458 0.91366 1.23071 0.92396 1.02416 1.03898 1.22940 0.98211 1.03383 0.96695 0.90636 0.92138 0.92060 0.75636 0.86539 0.87550 0.89695 0.84747 0.87477 0.88986 0.88380 0.88454 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 9.36 37.16 0.35 -2.16 16 2 C 0.19 2.64 3.15 -67.93 -0.21 2.42 16 3 H 0.09 1.33 7.24 -51.93 -0.38 0.95 16 4 N -1.11 -17.41 5.17 -4.89 -0.03 -17.43 16 5 S 2.70 52.79 5.03 -107.50 -0.54 52.25 16 6 O -0.99 -20.72 16.26 -57.17 -0.93 -21.65 16 7 O -0.97 -21.08 16.52 -57.17 -0.94 -22.02 16 8 C -0.79 -16.87 4.93 -39.26 -0.19 -17.07 16 9 C 0.01 0.17 9.52 -39.67 -0.38 -0.21 16 10 C -0.23 -5.18 9.79 -38.87 -0.38 -5.56 16 11 C 0.14 3.45 5.55 -106.83 -0.59 2.86 16 12 C -0.43 -9.90 9.06 -37.74 -0.34 -10.24 16 13 H 0.09 1.98 7.87 -52.49 -0.41 1.56 16 14 C 0.07 1.51 5.24 -17.34 -0.09 1.42 16 15 N -0.77 -17.38 10.86 55.55 0.60 -16.78 16 16 Si 0.92 16.33 29.58 -169.99 -5.03 11.31 16 17 H -0.26 -4.60 7.11 56.52 0.40 -4.19 16 18 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 19 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 20 C -0.16 -3.90 8.44 -38.84 -0.33 -4.23 16 21 C 0.08 1.73 5.91 -39.58 -0.23 1.49 16 22 Cl -0.10 -2.05 26.40 -51.86 -1.37 -3.42 16 23 C -0.15 -1.78 5.39 -90.62 -0.49 -2.27 16 24 C -0.18 -1.93 10.18 -26.73 -0.27 -2.21 16 25 C -0.17 -1.75 9.73 -26.73 -0.26 -2.01 16 26 H 0.07 1.34 6.71 -51.93 -0.35 1.00 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.79 7.29 -51.93 -0.38 0.41 16 29 H 0.41 5.62 8.83 -34.47 -0.30 5.31 16 30 H 0.12 2.27 7.31 -52.49 -0.38 1.89 16 31 H 0.11 2.15 8.06 -52.48 -0.42 1.72 16 32 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 33 H 0.13 3.30 6.22 -52.48 -0.33 2.98 16 34 H 0.11 1.14 8.12 -51.93 -0.42 0.72 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 37 H 0.10 0.96 7.61 -51.93 -0.39 0.57 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 343.43 15.07 5.18 5.18 Total: -1.00 -27.26 343.43 -11.07 -38.33 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -4.59 Total: 12.00 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: -3.43 Total: -37.76 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.58 Total: -34.21 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -1.87 Total: -43.67 kcal Atomic # 14 Polarization: 16.33 SS G_CDS: -5.03 Total: 11.31 kcal Atomic # 16 Polarization: 52.79 SS G_CDS: -0.54 Total: 52.25 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -1.37 Total: -3.42 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.26 -11.07 -38.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451008607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.620 kcal (2) G-P(sol) polarization free energy of solvation -27.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds