Wall clock time and date at job start Tue Mar 31 2020 15:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34769 * 116.99892 * 2 1 4 4 O 1.21529 * 120.00296 * 0.02562 * 3 2 1 5 5 C 1.47230 * 119.99737 * 179.97438 * 3 2 1 6 6 C 1.40016 * 120.22106 * 52.99655 * 5 3 2 7 7 F 1.35108 * 120.06674 * 0.04496 * 6 5 3 8 8 C 1.38111 * 119.86903 * 180.02562 * 6 5 3 9 9 C 1.38448 * 120.31423 * 359.97438 * 8 6 5 10 10 C 1.38178 * 120.45576 * 359.76371 * 9 8 6 11 11 Cl 1.73604 * 119.94502 * 180.25886 * 10 9 8 12 12 C 1.38871 * 120.12056 * 0.50971 * 10 9 8 13 13 N 1.39309 * 120.16019 * 179.73792 * 12 10 9 14 14 C 1.34770 * 120.00668 * 278.78780 * 13 12 10 15 15 O 1.21280 * 119.99574 * 354.59756 * 14 13 12 16 16 C 1.50697 * 120.00325 * 174.87820 * 14 13 12 17 17 C 1.52998 * 109.47218 * 179.72369 * 16 14 13 18 18 C 1.50697 * 109.47218 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99960 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00219 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00376 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99898 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47077 * 90.00531 * 22 20 18 24 24 H 1.48506 * 109.47258 * 210.00177 * 22 20 18 25 25 H 1.48503 * 109.47296 * 330.00452 * 22 20 18 26 26 H 1.08994 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47126 * 299.99743 * 1 2 3 28 28 H 1.09001 * 109.46919 * 59.99509 * 1 2 3 29 29 H 1.08002 * 119.84446 * 180.02562 * 8 6 5 30 30 H 1.08008 * 119.77332 * 180.02562 * 9 8 6 31 31 H 0.97005 * 119.99459 * 98.78349 * 13 12 10 32 32 H 1.09003 * 109.47023 * 299.72449 * 16 14 13 33 33 H 1.09004 * 109.47267 * 59.72369 * 16 14 13 34 34 H 1.09003 * 109.47189 * 299.99978 * 17 16 14 35 35 H 1.09003 * 109.47497 * 60.00010 * 17 16 14 36 36 H 0.96999 * 120.00329 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2201 0.0005 5 6 3.5342 1.2778 0.0006 6 6 4.2764 0.5873 -0.9652 7 9 3.6450 -0.1525 -1.9030 8 6 5.6554 0.6642 -0.9576 9 6 6.3077 1.4215 0.0004 10 6 5.5881 2.1126 0.9564 11 17 6.4194 3.0636 2.1473 12 6 4.2012 2.0437 0.9694 13 7 3.4751 2.7358 1.9361 14 6 3.3278 2.2143 3.1701 15 8 3.7424 1.1003 3.4110 16 6 2.6425 3.0128 4.2488 17 6 2.6013 2.1945 5.5409 18 6 1.9165 2.9933 6.6198 19 1 1.5479 3.9856 6.4054 20 6 1.7614 2.4578 7.8808 21 7 1.1642 3.1551 8.8225 22 14 2.3995 0.7418 8.2517 23 1 3.8021 0.8283 8.7317 24 1 1.5551 0.1157 9.3007 25 1 2.3485 -0.0828 7.0177 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 6.2275 0.1318 -1.7029 30 1 7.3864 1.4759 -0.0020 31 1 3.0754 3.5931 1.7210 32 1 3.1932 3.9375 4.4217 33 1 1.6254 3.2488 3.9356 34 1 2.0506 1.2699 5.3679 35 1 3.6183 1.9585 5.8542 36 1 1.0548 2.7782 9.7095 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891232421.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:03 Heat of formation + Delta-G solvation = -143.882124 kcal Electronic energy + Delta-G solvation = -25701.841497 eV Core-core repulsion = 21512.897096 eV Total energy + Delta-G solvation = -4188.944401 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.066 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.45743 -41.10550 -39.93285 -38.62841 -36.78732 -36.55209 -34.85430 -33.54808 -31.80699 -31.36954 -29.90673 -27.98382 -26.33106 -24.66115 -23.32536 -21.63859 -21.25085 -19.97379 -18.71422 -18.18454 -17.64627 -17.35654 -17.23325 -16.27799 -16.21500 -16.07518 -15.94805 -15.75488 -15.01982 -14.19290 -14.13422 -13.98608 -13.62736 -13.47645 -13.39055 -13.09006 -12.62185 -12.59983 -12.56216 -12.21003 -11.59360 -11.47319 -11.31105 -11.00134 -10.99355 -10.87022 -10.24196 -10.10991 -9.93383 -9.78613 -9.51416 -9.41976 -9.21824 -8.99342 -8.52782 -6.04778 -4.03941 0.12915 0.41299 1.64061 1.94149 2.37944 2.78028 2.82861 2.99598 3.36227 3.42980 3.53347 3.65474 4.19943 4.20353 4.48925 4.49402 4.62403 4.92833 4.97703 5.04575 5.21957 5.30480 5.31363 5.36632 5.40196 5.48136 5.91469 5.98975 6.01608 6.05069 6.44732 6.59797 7.30451 7.36712 7.37536 7.39732 7.74978 8.34353 8.50666 8.97889 9.57834 11.07955 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.004068 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.645000 B = 6880.875415 C = 8156.415083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.345 6.345 3 C 0.521 3.479 4 O -0.485 6.485 5 C -0.143 4.143 6 C 0.155 3.845 7 F -0.119 7.119 8 C -0.147 4.147 9 C -0.048 4.048 10 C -0.051 4.051 11 Cl -0.031 7.031 12 C 0.240 3.760 13 N -0.701 5.701 14 C 0.518 3.482 15 O -0.517 6.517 16 C -0.118 4.118 17 C 0.002 3.998 18 C -0.525 4.525 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.902 5.902 22 Si 0.876 3.124 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.261 1.261 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.420 0.580 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.023 0.977 35 H 0.021 0.979 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.369 -3.748 -24.385 26.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.261 6.261 3 C 0.364 3.636 4 O -0.372 6.372 5 C -0.147 4.147 6 C 0.135 3.865 7 F -0.097 7.097 8 C -0.166 4.166 9 C -0.067 4.067 10 C -0.080 4.080 11 Cl -0.002 7.002 12 C 0.146 3.854 13 N -0.357 5.357 14 C 0.309 3.691 15 O -0.389 6.389 16 C -0.158 4.158 17 C -0.036 4.036 18 C -0.563 4.563 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.541 5.541 22 Si 0.703 3.297 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.186 1.186 26 H 0.124 0.876 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.175 0.825 30 H 0.174 0.826 31 H 0.260 0.740 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.042 0.958 35 H 0.039 0.961 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.392 -4.203 -23.866 25.645 hybrid contribution -0.145 -0.458 0.094 0.490 sum 8.247 -4.661 -23.772 25.590 Atomic orbital electron populations 1.23383 0.75234 1.04227 1.02948 1.86644 1.24138 1.31742 1.83560 1.20474 0.88006 0.82286 0.72879 1.90877 1.66144 1.35810 1.44369 1.19317 0.91003 1.03869 1.00510 1.17509 0.90391 0.91029 0.87581 1.91583 1.82414 1.73714 1.61963 1.21069 0.91667 1.02281 1.01560 1.21047 1.01272 0.92981 0.91406 1.21199 0.91341 1.00169 0.95262 1.98424 1.76926 1.69656 1.55206 1.16782 0.88571 0.91826 0.88262 1.43765 1.56337 1.24846 1.10754 1.21887 0.78176 0.87305 0.81763 1.90702 1.48014 1.19499 1.80718 1.21708 1.00434 0.99822 0.93840 1.19388 0.97675 0.95641 0.90848 1.21073 1.37933 1.03173 0.94152 0.90820 1.24950 0.94526 0.97504 0.96097 1.69906 1.43260 1.37687 1.03229 0.86824 0.79050 0.85341 0.78518 1.20173 1.21384 1.18568 0.87621 0.91201 0.91636 0.82473 0.82637 0.73981 0.88903 0.89142 0.95827 0.96107 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.57 101.05 1.07 1.44 16 2 O -0.34 -4.81 10.36 -40.68 -0.42 -5.23 16 3 C 0.52 7.67 6.74 34.38 0.23 7.90 16 4 O -0.48 -7.61 16.43 -19.29 -0.32 -7.93 16 5 C -0.14 -1.90 5.78 -104.78 -0.61 -2.51 16 6 C 0.16 1.68 7.28 -38.96 -0.28 1.40 16 7 F -0.12 -1.30 16.66 2.25 0.04 -1.26 16 8 C -0.15 -1.15 10.00 -39.55 -0.40 -1.54 16 9 C -0.05 -0.40 9.80 -39.53 -0.39 -0.78 16 10 C -0.05 -0.59 6.33 -39.37 -0.25 -0.84 16 11 Cl -0.03 -0.38 28.19 -51.86 -1.46 -1.84 16 12 C 0.24 3.26 5.27 -83.43 -0.44 2.82 16 13 N -0.70 -10.20 3.73 -9.66 -0.04 -10.23 16 14 C 0.52 9.49 7.51 -10.99 -0.08 9.41 16 15 O -0.52 -11.25 15.96 5.56 0.09 -11.16 16 16 C -0.12 -2.29 5.64 -27.89 -0.16 -2.45 16 17 C 0.00 0.06 3.33 -27.89 -0.09 -0.03 16 18 C -0.53 -14.95 9.66 -34.44 -0.33 -15.28 16 19 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 20 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 21 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 22 Si 0.88 22.50 27.47 -169.99 -4.67 17.83 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 25 H -0.26 -6.69 6.54 56.52 0.37 -6.32 16 26 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.16 0.70 8.06 -52.49 -0.42 0.27 16 30 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 31 H 0.42 5.13 8.83 -40.82 -0.36 4.77 16 32 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 35 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -35.45 343.51 -6.32 -41.77 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -3.67 Total: -1.52 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.82 Total: 1.51 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.74 Total: -37.33 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.65 Total: -24.33 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.67 Total: 17.83 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.46 Total: -1.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.45 -6.32 -41.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891232421.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.117 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds