Wall clock time and date at job start Tue Mar 31 2020 15:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34769 * 116.99892 * 2 1 4 4 O 1.21529 * 120.00296 * 0.02562 * 3 2 1 5 5 C 1.47230 * 119.99737 * 179.97438 * 3 2 1 6 6 C 1.40016 * 120.22106 * 52.99655 * 5 3 2 7 7 F 1.35108 * 120.06674 * 0.04496 * 6 5 3 8 8 C 1.38111 * 119.86903 * 180.02562 * 6 5 3 9 9 C 1.38448 * 120.31423 * 359.97438 * 8 6 5 10 10 C 1.38178 * 120.45576 * 359.76371 * 9 8 6 11 11 Cl 1.73604 * 119.94502 * 180.25886 * 10 9 8 12 12 C 1.38871 * 120.12056 * 0.50971 * 10 9 8 13 13 N 1.39309 * 120.16019 * 179.73792 * 12 10 9 14 14 C 1.34770 * 120.00668 * 278.78780 * 13 12 10 15 15 O 1.21280 * 119.99574 * 354.59756 * 14 13 12 16 16 C 1.50697 * 120.00325 * 174.87820 * 14 13 12 17 17 C 1.52998 * 109.47218 * 179.72369 * 16 14 13 18 18 C 1.50697 * 109.47218 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99960 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00219 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00376 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99898 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47077 * 90.00531 * 22 20 18 24 24 H 1.48506 * 109.47258 * 210.00177 * 22 20 18 25 25 H 1.48503 * 109.47296 * 330.00452 * 22 20 18 26 26 H 1.08994 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47126 * 299.99743 * 1 2 3 28 28 H 1.09001 * 109.46919 * 59.99509 * 1 2 3 29 29 H 1.08002 * 119.84446 * 180.02562 * 8 6 5 30 30 H 1.08008 * 119.77332 * 180.02562 * 9 8 6 31 31 H 0.97005 * 119.99459 * 98.78349 * 13 12 10 32 32 H 1.09003 * 109.47023 * 299.72449 * 16 14 13 33 33 H 1.09004 * 109.47267 * 59.72369 * 16 14 13 34 34 H 1.09003 * 109.47189 * 299.99978 * 17 16 14 35 35 H 1.09003 * 109.47497 * 60.00010 * 17 16 14 36 36 H 0.96999 * 120.00329 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2201 0.0005 5 6 3.5342 1.2778 0.0006 6 6 4.2764 0.5873 -0.9652 7 9 3.6450 -0.1525 -1.9030 8 6 5.6554 0.6642 -0.9576 9 6 6.3077 1.4215 0.0004 10 6 5.5881 2.1126 0.9564 11 17 6.4194 3.0636 2.1473 12 6 4.2012 2.0437 0.9694 13 7 3.4751 2.7358 1.9361 14 6 3.3278 2.2143 3.1701 15 8 3.7424 1.1003 3.4110 16 6 2.6425 3.0128 4.2488 17 6 2.6013 2.1945 5.5409 18 6 1.9165 2.9933 6.6198 19 1 1.5479 3.9856 6.4054 20 6 1.7614 2.4578 7.8808 21 7 1.1642 3.1551 8.8225 22 14 2.3995 0.7418 8.2517 23 1 3.8021 0.8283 8.7317 24 1 1.5551 0.1157 9.3007 25 1 2.3485 -0.0828 7.0177 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 6.2275 0.1318 -1.7029 30 1 7.3864 1.4759 -0.0020 31 1 3.0754 3.5931 1.7210 32 1 3.1932 3.9375 4.4217 33 1 1.6254 3.2488 3.9356 34 1 2.0506 1.2699 5.3679 35 1 3.6183 1.9585 5.8542 36 1 1.0548 2.7782 9.7095 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891232421.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:03 Heat of formation + Delta-G solvation = -166.550755 kcal Electronic energy + Delta-G solvation = -25702.824483 eV Core-core repulsion = 21512.897096 eV Total energy + Delta-G solvation = -4189.927387 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.066 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.27469 -42.16589 -41.10591 -39.73420 -37.76988 -37.51900 -36.05689 -35.57393 -33.43517 -32.60351 -30.93823 -28.89124 -28.10032 -25.61062 -24.49237 -23.01582 -22.40187 -21.51887 -19.68677 -19.38066 -19.07513 -18.56073 -18.24820 -17.82468 -17.24579 -17.11274 -16.83785 -16.64986 -16.41327 -16.25408 -15.21711 -15.02917 -14.90515 -14.69693 -14.46726 -14.34388 -14.26120 -13.82402 -13.47207 -13.43161 -13.04772 -12.94119 -12.46044 -12.24296 -12.19280 -12.01883 -11.98515 -11.90131 -11.80803 -11.44180 -11.14917 -10.87327 -10.78267 -10.40799 -9.86356 -8.32565 -6.36015 -0.71986 -0.41649 0.70480 0.96429 1.32356 1.34285 1.39843 1.47689 1.48865 1.75950 2.08802 2.33721 2.81683 3.03031 3.30569 3.48696 3.55557 3.77870 4.00311 4.13198 4.20316 4.21783 4.31314 4.39002 4.49745 4.58680 4.69491 4.75610 4.89408 5.02761 5.13024 5.28657 5.38311 5.40673 5.57887 6.13573 6.23349 6.31623 6.69738 7.00055 7.29288 8.83152 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.004068 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.645000 B = 6880.875415 C = 8156.415083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.514 3.486 4 O -0.507 6.507 5 C -0.166 4.166 6 C 0.150 3.850 7 F -0.120 7.120 8 C -0.120 4.120 9 C -0.031 4.031 10 C -0.060 4.060 11 Cl -0.041 7.041 12 C 0.210 3.790 13 N -0.686 5.686 14 C 0.528 3.472 15 O -0.555 6.555 16 C -0.114 4.114 17 C 0.008 3.992 18 C -0.530 4.530 19 H 0.050 0.950 20 C 0.016 3.984 21 N -0.943 5.943 22 Si 0.936 3.064 23 H -0.266 1.266 24 H -0.278 1.278 25 H -0.262 1.262 26 H 0.135 0.865 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.202 0.798 30 H 0.195 0.805 31 H 0.429 0.571 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.010 0.990 35 H 0.014 0.986 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.400 -5.115 -26.440 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.358 3.642 4 O -0.396 6.396 5 C -0.170 4.170 6 C 0.130 3.870 7 F -0.099 7.099 8 C -0.138 4.138 9 C -0.050 4.050 10 C -0.089 4.089 11 Cl -0.012 7.012 12 C 0.116 3.884 13 N -0.340 5.340 14 C 0.318 3.682 15 O -0.431 6.431 16 C -0.154 4.154 17 C -0.030 4.030 18 C -0.568 4.568 19 H 0.068 0.932 20 C -0.181 4.181 21 N -0.583 5.583 22 Si 0.761 3.239 23 H -0.191 1.191 24 H -0.203 1.203 25 H -0.186 1.186 26 H 0.153 0.847 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.219 0.781 30 H 0.212 0.788 31 H 0.270 0.730 32 H 0.128 0.872 33 H 0.119 0.881 34 H 0.028 0.972 35 H 0.032 0.968 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.423 -5.548 -25.965 28.524 hybrid contribution -0.796 0.003 0.616 1.007 sum 9.626 -5.545 -25.350 27.677 Atomic orbital electron populations 1.23662 0.73711 1.06209 1.02906 1.86635 1.25820 1.31588 1.83292 1.20883 0.88845 0.82202 0.72274 1.90846 1.66835 1.36343 1.45571 1.19380 0.90410 1.05300 1.01860 1.17737 0.91439 0.90797 0.87070 1.91580 1.82734 1.73679 1.61873 1.21562 0.90293 1.00624 1.01367 1.21534 1.03003 0.90886 0.89579 1.21388 0.90675 1.00828 0.96004 1.98422 1.76841 1.70052 1.55893 1.16942 0.89397 0.93344 0.88715 1.43369 1.55711 1.25004 1.09896 1.21410 0.77675 0.86475 0.82667 1.90678 1.49899 1.20879 1.81638 1.21521 1.01785 0.99765 0.92328 1.19207 0.96262 0.95208 0.92281 1.21378 1.37536 1.02600 0.95295 0.93197 1.25772 0.94895 1.01357 0.96121 1.70019 1.44796 1.39609 1.03865 0.85859 0.78971 0.80696 0.78396 1.19144 1.20317 1.18585 0.84697 0.92385 0.90556 0.78054 0.78769 0.72973 0.87208 0.88138 0.97195 0.96804 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.57 113.37 1.20 1.76 16 2 O -0.36 -9.90 10.36 -56.80 -0.59 -10.49 16 3 C 0.51 15.15 6.74 70.19 0.47 15.62 16 4 O -0.51 -16.16 16.43 19.74 0.32 -15.84 16 5 C -0.17 -4.26 5.78 -19.97 -0.12 -4.38 16 6 C 0.15 2.89 7.28 22.67 0.17 3.05 16 7 F -0.12 -2.38 16.66 44.97 0.75 -1.63 16 8 C -0.12 -1.35 10.00 22.29 0.22 -1.13 16 9 C -0.03 -0.39 9.80 22.31 0.22 -0.17 16 10 C -0.06 -1.28 6.33 22.41 0.14 -1.13 16 11 Cl -0.04 -0.94 28.19 -2.72 -0.08 -1.02 16 12 C 0.21 5.50 5.27 38.62 0.20 5.70 16 13 N -0.69 -19.75 3.73 -302.85 -1.13 -20.88 16 14 C 0.53 19.28 7.51 87.66 0.66 19.94 16 15 O -0.55 -24.18 15.96 -3.03 -0.05 -24.23 16 16 C -0.11 -4.44 5.64 29.85 0.17 -4.28 16 17 C 0.01 0.42 3.33 29.85 0.10 0.52 16 18 C -0.53 -30.70 9.66 25.60 0.25 -30.46 16 19 H 0.05 3.05 7.99 -2.91 -0.02 3.03 16 20 C 0.02 0.98 5.47 84.65 0.46 1.44 16 21 N -0.94 -59.10 13.96 21.45 0.30 -58.81 16 22 Si 0.94 46.64 27.47 68.60 1.88 48.53 16 23 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 24 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.26 -12.95 6.54 99.48 0.65 -12.30 16 26 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.20 0.52 8.06 -2.91 -0.02 0.50 16 30 H 0.20 0.94 8.06 -2.91 -0.02 0.91 16 31 H 0.43 10.43 8.83 -92.70 -0.82 9.61 16 32 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 33 H 0.10 3.67 8.14 -2.38 -0.02 3.65 16 34 H 0.01 0.51 7.16 -2.39 -0.02 0.49 16 35 H 0.01 0.70 7.53 -2.39 -0.02 0.68 16 36 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -78.55 343.51 5.83 -72.71 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 0.27 Total: 5.15 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 4.14 Total: 6.50 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -0.83 Total: -79.68 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -0.31 Total: -50.56 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.75 Total: -1.63 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.88 Total: 48.53 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -78.55 5.83 -72.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891232421.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.836 kcal (2) G-P(sol) polarization free energy of solvation -78.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds