Wall clock time and date at job start Tue Mar 31 2020 15:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39092 * 120.56278 * 205.56993 * 3 2 1 5 5 C 1.39382 * 119.80321 * 180.28769 * 4 3 2 6 6 C 1.48009 * 119.49715 * 179.72717 * 5 4 3 7 7 C 1.39786 * 120.02509 * 359.74778 * 6 5 4 8 8 C 1.38055 * 120.18631 * 179.71841 * 7 6 5 9 9 F 1.35097 * 119.88304 * 180.29506 * 8 7 6 10 10 C 1.38713 * 120.22747 * 0.55409 * 8 7 6 11 11 F 1.35095 * 119.97939 * 179.70077 * 10 8 7 12 12 C 1.39960 * 120.03901 * 359.72146 * 10 8 7 13 13 C 1.47602 * 120.08814 * 180.02562 * 12 10 8 14 14 O 1.21486 * 120.00318 * 359.97438 * 13 12 10 15 15 O 1.34733 * 119.99816 * 179.97438 * 13 12 10 16 16 C 1.39250 * 120.01779 * 180.02562 * 6 5 4 17 17 C 1.39987 * 120.99997 * 359.74327 * 5 4 3 18 18 C 1.36003 * 121.19465 * 359.96228 * 17 5 4 19 19 C 1.41049 * 120.10590 * 0.02562 * 18 17 5 20 20 C 1.40435 * 120.48551 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99640 * 154.63485 * 20 19 18 22 22 C 1.40289 * 120.00237 * 334.64626 * 20 19 18 23 23 N 1.30644 * 120.00258 * 334.60651 * 22 20 19 24 24 Si 1.86808 * 120.00167 * 154.60982 * 22 20 19 25 25 H 1.48502 * 109.46873 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.46942 * 299.99705 * 24 22 20 27 27 H 1.48499 * 109.47070 * 59.99594 * 24 22 20 28 28 H 1.08001 * 120.09545 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.90355 * 359.96854 * 7 6 5 30 30 H 0.96697 * 116.99875 * 179.97438 * 15 13 12 31 31 H 1.08000 * 120.11611 * 0.03057 * 16 6 5 32 32 H 1.08000 * 119.40176 * 179.97438 * 17 5 4 33 33 H 1.08001 * 119.94283 * 179.97438 * 18 17 5 34 34 H 0.97007 * 119.99071 * 354.18442 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2748 1.0813 0.5169 5 6 4.6685 1.0679 0.5035 6 6 5.4137 2.2241 1.0498 7 6 4.7202 3.3211 1.5693 8 6 5.4120 4.3988 2.0850 9 9 4.7356 5.4531 2.5909 10 6 6.7991 4.4051 2.0805 11 9 7.4709 5.4650 2.5809 12 6 7.5030 3.3143 1.5575 13 6 8.9790 3.3197 1.5527 14 8 9.5845 4.2719 2.0028 15 8 9.6549 2.2685 1.0493 16 6 6.8062 2.2224 1.0413 17 6 5.3740 -0.0224 -0.0192 18 6 4.7242 -1.1027 -0.5294 19 6 3.3142 -1.1404 -0.5399 20 6 2.6351 -2.2517 -1.0653 21 1 1.6361 -2.4836 -0.7266 22 6 3.2544 -3.0606 -2.0297 23 7 4.1900 -2.5649 -2.7950 24 14 2.7410 -4.8467 -2.2200 25 1 3.5404 -5.4791 -3.3000 26 1 2.9753 -5.5677 -0.9431 27 1 1.2990 -4.9128 -2.5684 28 1 2.7452 1.9305 0.9229 29 1 3.6402 3.3237 1.5709 30 1 10.6204 2.3178 1.0676 31 1 7.3446 1.3784 0.6360 32 1 6.4538 -0.0054 -0.0170 33 1 5.2887 -1.9327 -0.9279 34 1 4.3981 -1.6183 -2.7552 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206038607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:55 Heat of formation + Delta-G solvation = -121.766916 kcal Electronic energy + Delta-G solvation = -25839.963568 eV Core-core repulsion = 21530.950698 eV Total energy + Delta-G solvation = -4309.012869 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.065 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.40023 -48.46380 -40.39737 -39.10999 -37.71424 -36.21063 -35.45332 -34.75208 -31.87345 -31.34946 -30.18372 -28.86488 -25.82669 -25.21789 -23.22608 -22.26100 -21.98379 -20.65370 -18.82080 -18.46401 -17.95237 -17.63212 -16.82822 -16.50653 -16.41149 -15.92076 -15.58841 -15.53200 -14.82022 -14.74517 -14.53685 -14.25720 -13.99420 -13.71235 -13.26638 -13.16474 -12.88373 -12.54889 -12.43496 -12.41362 -12.08437 -11.82415 -11.72797 -11.67881 -11.56930 -11.22957 -11.11556 -10.72906 -10.66410 -10.21260 -10.16542 -9.68300 -9.27249 -8.95138 -8.29136 -7.95963 -7.65436 -5.11937 0.35782 0.84066 1.85718 2.07091 2.51753 2.70678 2.85776 2.91696 3.06440 3.44021 3.55559 3.60833 3.79983 3.94961 4.12641 4.34726 4.50863 4.70613 4.89443 4.98682 5.05683 5.11755 5.46446 5.61858 5.65243 5.81344 5.89175 6.05116 6.09495 6.27232 6.32546 6.45337 6.66812 6.69599 6.96865 7.07241 7.13480 7.27469 7.42110 7.55692 7.70994 7.96455 8.06970 8.50527 9.30219 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.015712 B = 0.003237 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.610686 B = 8647.475907 C =10321.860266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.294 3.706 3 C -0.182 4.182 4 C 0.018 3.982 5 C -0.227 4.227 6 C 0.035 3.965 7 C -0.126 4.126 8 C 0.075 3.925 9 F -0.128 7.128 10 C 0.081 3.919 11 F -0.115 7.115 12 C -0.125 4.125 13 C 0.531 3.469 14 O -0.503 6.503 15 O -0.506 6.506 16 C -0.070 4.070 17 C -0.033 4.033 18 C -0.213 4.213 19 C 0.124 3.876 20 C -0.442 4.442 21 H 0.091 0.909 22 C 0.033 3.967 23 N -0.742 5.742 24 Si 1.066 2.934 25 H -0.266 1.266 26 H -0.266 1.266 27 H -0.269 1.269 28 H 0.107 0.893 29 H 0.150 0.850 30 H 0.416 0.584 31 H 0.154 0.846 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.136 3.019 3.206 9.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.017 4.017 3 C -0.187 4.187 4 C -0.003 4.003 5 C -0.228 4.228 6 C 0.035 3.965 7 C -0.145 4.145 8 C 0.055 3.945 9 F -0.107 7.107 10 C 0.060 3.940 11 F -0.094 7.094 12 C -0.127 4.127 13 C 0.375 3.625 14 O -0.392 6.392 15 O -0.318 6.318 16 C -0.089 4.089 17 C -0.052 4.052 18 C -0.232 4.232 19 C 0.118 3.882 20 C -0.467 4.467 21 H 0.109 0.891 22 C -0.195 4.195 23 N -0.361 5.361 24 Si 0.887 3.113 25 H -0.190 1.190 26 H -0.191 1.191 27 H -0.194 1.194 28 H 0.125 0.875 29 H 0.168 0.832 30 H 0.274 0.726 31 H 0.172 0.828 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.506 1.987 2.476 7.239 hybrid contribution 0.768 1.995 1.064 2.388 sum 7.274 3.982 3.541 9.017 Atomic orbital electron populations 1.81071 1.12562 1.10144 1.13587 1.25672 0.92610 0.91849 0.91521 1.16650 0.83394 0.98271 1.20434 1.20680 0.92711 0.94730 0.92228 1.17456 0.91726 0.96391 1.17217 1.18670 0.91837 0.92723 0.93314 1.21357 1.01612 0.91863 0.99630 1.17258 0.87549 0.87193 1.02521 1.91527 1.79520 1.54608 1.85046 1.17405 0.88149 0.86078 1.02320 1.91565 1.79895 1.53299 1.84601 1.18700 0.89744 0.96361 1.07867 1.20487 0.88228 0.79658 0.74167 1.90946 1.70142 1.34871 1.43262 1.84565 1.26768 1.44135 1.76314 1.21507 0.93564 0.96829 0.96962 1.20434 0.98111 0.92363 0.94285 1.20791 0.93473 0.99684 1.09233 1.18533 0.91548 0.89264 0.88846 1.21095 1.03385 1.05786 1.16432 0.89085 1.27529 0.92159 1.08003 0.91829 1.70425 1.19301 1.19384 1.26997 0.83581 0.77721 0.71405 0.78585 1.18978 1.19076 1.19356 0.87476 0.83245 0.72562 0.82843 0.87697 0.86430 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -10.91 18.54 41.84 0.78 -10.14 16 2 C 0.29 6.18 14.30 -22.47 -0.32 5.86 16 3 C -0.18 -3.63 5.93 -104.27 -0.62 -4.24 16 4 C 0.02 0.30 9.12 -38.84 -0.35 -0.05 16 5 C -0.23 -3.70 5.88 -104.81 -0.62 -4.32 16 6 C 0.04 0.50 5.87 -104.94 -0.62 -0.11 16 7 C -0.13 -1.72 9.38 -39.07 -0.37 -2.08 16 8 C 0.07 1.07 7.29 -39.47 -0.29 0.78 16 9 F -0.13 -1.88 17.17 2.25 0.04 -1.84 16 10 C 0.08 1.22 7.30 -38.76 -0.28 0.93 16 11 F -0.12 -1.90 15.44 2.25 0.03 -1.86 16 12 C -0.12 -1.73 5.87 -104.98 -0.62 -2.34 16 13 C 0.53 7.02 8.27 34.55 0.29 7.30 16 14 O -0.50 -8.01 16.11 -19.25 -0.31 -8.32 16 15 O -0.51 -4.84 12.67 -40.58 -0.51 -5.36 16 16 C -0.07 -0.93 8.98 -38.76 -0.35 -1.28 16 17 C -0.03 -0.55 9.29 -39.73 -0.37 -0.92 16 18 C -0.21 -4.04 7.88 -39.32 -0.31 -4.35 16 19 C 0.12 2.58 5.46 -104.62 -0.57 2.01 16 20 C -0.44 -9.46 8.48 -37.98 -0.32 -9.78 16 21 H 0.09 1.99 7.45 -52.48 -0.39 1.60 16 22 C 0.03 0.67 4.95 -17.29 -0.09 0.58 16 23 N -0.74 -15.47 12.31 55.57 0.68 -14.79 16 24 Si 1.07 17.34 30.01 -169.99 -5.10 12.24 16 25 H -0.27 -4.29 7.11 56.52 0.40 -3.89 16 26 H -0.27 -4.17 7.11 56.52 0.40 -3.76 16 27 H -0.27 -4.30 7.11 56.52 0.40 -3.90 16 28 H 0.11 1.61 6.12 -52.49 -0.32 1.29 16 29 H 0.15 1.84 6.13 -52.49 -0.32 1.51 16 30 H 0.42 1.96 9.11 45.56 0.42 2.37 16 31 H 0.15 1.81 5.66 -52.49 -0.30 1.52 16 32 H 0.11 1.47 6.08 -52.49 -0.32 1.15 16 33 H 0.12 2.27 6.48 -52.49 -0.34 1.93 16 34 H 0.31 6.52 6.68 -40.82 -0.27 6.24 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -25.18 321.53 -5.99 -31.17 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -0.64 Total: 6.06 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -5.80 Total: -12.01 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 1.46 Total: -24.93 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.82 Total: -13.67 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.07 Total: -3.70 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.10 Total: 12.24 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -25.18 -5.99 -31.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206038607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.598 kcal (2) G-P(sol) polarization free energy of solvation -25.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds