Wall clock time and date at job start Tue Mar 31 2020 16:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 119.99819 * 2 1 4 4 H 1.48502 * 109.46954 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47370 * 299.99799 * 3 2 1 6 6 H 1.48503 * 109.47385 * 60.00158 * 3 2 1 7 7 C 1.37881 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99881 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00210 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.50321 * 299.92342 * 9 7 2 11 11 C 1.53121 * 109.50191 * 59.99821 * 9 7 2 12 12 C 1.53120 * 109.15843 * 177.63366 * 11 9 7 13 13 C 1.53031 * 109.28082 * 302.34497 * 12 11 9 14 14 N 1.46856 * 109.51994 * 59.17887 * 13 12 11 15 15 C 1.46901 * 110.99722 * 174.16049 * 14 13 12 16 16 C 1.50698 * 109.46898 * 176.03292 * 15 14 13 17 17 C 1.38275 * 119.96891 * 254.34279 * 16 15 14 18 18 C 1.38236 * 120.12877 * 179.97438 * 17 16 15 19 19 C 1.38284 * 120.06028 * 359.76321 * 18 17 16 20 20 Cl 1.73605 * 120.03038 * 180.25394 * 19 18 17 21 21 C 1.38761 * 119.93828 * 0.49293 * 19 18 17 22 22 O 1.35952 * 120.06702 * 179.76086 * 21 19 18 23 23 C 1.38246 * 119.96578 * 74.32513 * 16 15 14 24 24 Cl 1.73593 * 120.03258 * 0.02562 * 23 16 15 25 25 C 1.46841 * 111.20005 * 298.25845 * 14 13 12 26 26 H 0.96998 * 120.00060 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.52353 * 57.73126 * 11 9 7 28 28 H 1.09006 * 109.57472 * 297.57359 * 11 9 7 29 29 H 1.09003 * 109.49930 * 182.40215 * 12 11 9 30 30 H 1.08997 * 109.50247 * 62.28920 * 12 11 9 31 31 H 1.09003 * 109.46285 * 299.16981 * 13 12 11 32 32 H 1.08996 * 109.46248 * 179.19398 * 13 12 11 33 33 H 1.09002 * 109.47089 * 56.03117 * 15 14 13 34 34 H 1.08995 * 109.47290 * 296.03688 * 15 14 13 35 35 H 1.08000 * 119.93735 * 0.02562 * 17 16 15 36 36 H 1.07996 * 119.97090 * 180.02562 * 18 17 16 37 37 H 0.96698 * 114.00507 * 269.72502 * 22 21 19 38 38 H 1.08998 * 109.46323 * 181.76097 * 25 14 13 39 39 H 1.09007 * 109.46145 * 301.72743 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6249 -2.5579 0.8908 11 6 0.3709 -2.5813 -1.2498 12 6 -0.3455 -3.9344 -1.2720 13 6 0.6939 -5.0571 -1.2390 14 7 1.5098 -4.9349 -0.0241 15 6 2.4265 -6.0747 0.1112 16 6 3.3124 -5.8670 1.3125 17 6 4.6374 -5.5112 1.1404 18 6 5.4528 -5.3194 2.2401 19 6 4.9438 -5.4781 3.5160 20 17 5.9668 -5.2305 4.8965 21 6 3.6159 -5.8403 3.6917 22 8 3.1140 -6.0018 4.9448 23 6 2.7993 -6.0321 2.5856 24 17 1.1357 -6.4790 2.8007 25 6 2.2442 -3.6635 -0.0033 26 1 -0.4850 0.8400 -0.0004 27 1 0.9925 -2.4836 -2.1398 28 1 -0.3666 -1.7789 -1.2306 29 1 -0.9407 -4.0161 -2.1815 30 1 -0.9968 -4.0157 -0.4018 31 1 1.3361 -4.9834 -2.1166 32 1 0.1866 -6.0218 -1.2403 33 1 3.0421 -6.1542 -0.7848 34 1 1.8505 -6.9912 0.2386 35 1 5.0359 -5.3822 0.1449 36 1 6.4872 -5.0411 2.1027 37 1 3.1952 -6.9021 5.2880 38 1 2.8629 -3.6161 0.8928 39 1 2.8791 -3.5964 -0.8868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232632404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:06 Heat of formation + Delta-G solvation = -32.771068 kcal Electronic energy + Delta-G solvation = -24052.193560 eV Core-core repulsion = 20432.236765 eV Total energy + Delta-G solvation = -3619.956795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.069 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18438 -38.32003 -36.86417 -36.70568 -36.14170 -33.90194 -32.26069 -30.32627 -29.92265 -29.72232 -25.98713 -24.91751 -23.05852 -22.59325 -21.31779 -21.00490 -18.58822 -18.32427 -17.01249 -16.58114 -16.38634 -15.52864 -15.18062 -14.57209 -14.42699 -14.33853 -13.85362 -13.42047 -13.20977 -12.99802 -12.58592 -12.45149 -12.42583 -12.10956 -11.95216 -11.64095 -11.51808 -11.22365 -10.98727 -10.94103 -10.89679 -10.67679 -10.62612 -10.44691 -10.08632 -9.81435 -9.44606 -9.03246 -8.74701 -8.69728 -8.59289 -8.27228 -7.66657 -5.94135 -3.99842 0.85390 0.92683 1.83852 2.37392 3.24602 3.31878 3.40054 3.43367 3.83011 4.40417 4.51836 4.72654 4.78195 4.99450 5.23205 5.29097 5.36210 5.51061 5.66240 5.71052 5.80306 5.83040 5.93509 6.06869 6.20081 6.28186 6.36445 6.41258 6.52810 6.72144 6.76922 6.98611 7.23928 7.38034 7.40567 7.64109 7.75793 7.81093 8.12886 8.21054 8.51407 9.04216 9.64271 11.11942 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.011164 B = 0.004631 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.362841 B = 6045.032524 C = 7448.985580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.052 0.948 9 C 0.056 3.944 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.065 3.935 14 N -0.526 5.526 15 C 0.090 3.910 16 C -0.045 4.045 17 C -0.098 4.098 18 C -0.094 4.094 19 C -0.056 4.056 20 Cl -0.055 7.055 21 C 0.121 3.879 22 O -0.473 6.473 23 C -0.029 4.029 24 Cl -0.030 7.030 25 C 0.067 3.933 26 H 0.258 0.742 27 H 0.029 0.971 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.390 0.610 38 H 0.059 0.941 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.047 -16.725 3.786 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.038 3.962 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.062 4.062 14 N -0.250 5.250 15 C -0.037 4.037 16 C -0.047 4.047 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.083 4.083 20 Cl -0.026 7.026 21 C 0.074 3.926 22 O -0.283 6.283 23 C -0.058 4.058 24 Cl 0.000 7.000 25 C -0.060 4.060 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.246 0.754 38 H 0.078 0.922 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 7.369 -16.028 4.284 18.154 hybrid contribution 1.116 0.554 -0.475 1.333 sum 8.485 -15.475 3.809 18.055 Atomic orbital electron populations 1.69902 1.05803 1.26135 1.50834 1.24918 0.94798 0.98867 0.95194 0.86611 0.80161 0.84137 0.77533 1.19885 1.21114 1.21041 1.21161 0.92762 0.90679 1.50449 0.92945 1.18638 0.92575 0.90213 0.94815 0.94802 1.21655 1.00028 0.94743 0.98423 1.21663 0.97141 0.96380 1.00235 1.22013 0.95556 0.98924 0.89732 1.62138 1.23031 1.01684 1.38194 1.21070 0.93476 0.96344 0.92856 1.19746 0.94251 0.97109 0.93586 1.21036 0.92408 0.98962 0.99275 1.20997 1.01022 0.99442 0.89829 1.21145 0.90693 1.06958 0.89533 1.98368 1.66726 1.95171 1.42342 1.17780 0.89023 1.01132 0.84688 1.84929 1.82050 1.34608 1.26686 1.21001 0.87589 1.04169 0.93010 1.98386 1.14174 1.90183 1.97302 1.22355 0.96525 0.88487 0.98593 0.93159 0.95251 0.89130 0.93514 0.92020 0.95810 0.92337 0.94119 0.89810 0.84160 0.84097 0.75419 0.92214 0.96433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 11.35 55.43 0.63 -24.94 16 2 C 0.06 1.77 5.30 -17.81 -0.09 1.67 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.10 8.57 -34.44 -0.29 -14.40 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 10 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.59 5.02 -26.61 -0.13 -2.73 16 12 C -0.12 -2.23 6.09 -26.65 -0.16 -2.40 16 13 C 0.07 1.10 5.46 -3.83 -0.02 1.08 16 14 N -0.53 -9.26 4.61 -236.12 -1.09 -10.35 16 15 C 0.09 1.27 4.59 -4.98 -0.02 1.24 16 16 C -0.05 -0.63 3.74 -104.61 -0.39 -1.02 16 17 C -0.10 -1.20 9.01 -39.57 -0.36 -1.55 16 18 C -0.09 -1.10 9.83 -39.57 -0.39 -1.49 16 19 C -0.06 -0.71 6.33 -39.37 -0.25 -0.96 16 20 Cl -0.05 -0.64 28.50 -51.86 -1.48 -2.12 16 21 C 0.12 1.63 6.69 -39.18 -0.26 1.37 16 22 O -0.47 -5.82 12.42 -19.59 -0.24 -6.07 16 23 C -0.03 -0.42 6.33 -39.37 -0.25 -0.67 16 24 Cl -0.03 -0.43 27.07 -51.86 -1.40 -1.84 16 25 C 0.07 1.40 4.30 -3.84 -0.02 1.38 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 33 H 0.04 0.52 7.94 -51.93 -0.41 0.11 16 34 H 0.08 1.08 7.61 -51.93 -0.40 0.68 16 35 H 0.14 1.46 7.99 -52.49 -0.42 1.04 16 36 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.39 2.89 9.06 45.56 0.41 3.30 16 38 H 0.06 1.28 6.25 -51.93 -0.32 0.96 16 39 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -30.13 344.45 -10.65 -40.77 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.38 Total: 0.11 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.85 Total: -17.27 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: -0.46 Total: -35.28 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.24 Total: -6.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -2.88 Total: -3.96 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.13 -10.65 -40.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232632404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.004 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds