Wall clock time and date at job start Tue Mar 31 2020 16:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 119.99819 * 2 1 4 4 H 1.48502 * 109.46954 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47370 * 299.99799 * 3 2 1 6 6 H 1.48503 * 109.47385 * 60.00158 * 3 2 1 7 7 C 1.37881 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99881 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00210 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.50321 * 299.92342 * 9 7 2 11 11 C 1.53121 * 109.50191 * 59.99821 * 9 7 2 12 12 C 1.53120 * 109.15843 * 177.63366 * 11 9 7 13 13 C 1.53031 * 109.28082 * 302.34497 * 12 11 9 14 14 N 1.46856 * 109.51994 * 59.17887 * 13 12 11 15 15 C 1.46901 * 110.99722 * 174.16049 * 14 13 12 16 16 C 1.50698 * 109.46898 * 176.03292 * 15 14 13 17 17 C 1.38275 * 119.96891 * 254.34279 * 16 15 14 18 18 C 1.38236 * 120.12877 * 179.97438 * 17 16 15 19 19 C 1.38284 * 120.06028 * 359.76321 * 18 17 16 20 20 Cl 1.73605 * 120.03038 * 180.25394 * 19 18 17 21 21 C 1.38761 * 119.93828 * 0.49293 * 19 18 17 22 22 O 1.35952 * 120.06702 * 179.76086 * 21 19 18 23 23 C 1.38246 * 119.96578 * 74.32513 * 16 15 14 24 24 Cl 1.73593 * 120.03258 * 0.02562 * 23 16 15 25 25 C 1.46841 * 111.20005 * 298.25845 * 14 13 12 26 26 H 0.96998 * 120.00060 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.52353 * 57.73126 * 11 9 7 28 28 H 1.09006 * 109.57472 * 297.57359 * 11 9 7 29 29 H 1.09003 * 109.49930 * 182.40215 * 12 11 9 30 30 H 1.08997 * 109.50247 * 62.28920 * 12 11 9 31 31 H 1.09003 * 109.46285 * 299.16981 * 13 12 11 32 32 H 1.08996 * 109.46248 * 179.19398 * 13 12 11 33 33 H 1.09002 * 109.47089 * 56.03117 * 15 14 13 34 34 H 1.08995 * 109.47290 * 296.03688 * 15 14 13 35 35 H 1.08000 * 119.93735 * 0.02562 * 17 16 15 36 36 H 1.07996 * 119.97090 * 180.02562 * 18 17 16 37 37 H 0.96698 * 114.00507 * 269.72502 * 22 21 19 38 38 H 1.08998 * 109.46323 * 181.76097 * 25 14 13 39 39 H 1.09007 * 109.46145 * 301.72743 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6249 -2.5579 0.8908 11 6 0.3709 -2.5813 -1.2498 12 6 -0.3455 -3.9344 -1.2720 13 6 0.6939 -5.0571 -1.2390 14 7 1.5098 -4.9349 -0.0241 15 6 2.4265 -6.0747 0.1112 16 6 3.3124 -5.8670 1.3125 17 6 4.6374 -5.5112 1.1404 18 6 5.4528 -5.3194 2.2401 19 6 4.9438 -5.4781 3.5160 20 17 5.9668 -5.2305 4.8965 21 6 3.6159 -5.8403 3.6917 22 8 3.1140 -6.0018 4.9448 23 6 2.7993 -6.0321 2.5856 24 17 1.1357 -6.4790 2.8007 25 6 2.2442 -3.6635 -0.0033 26 1 -0.4850 0.8400 -0.0004 27 1 0.9925 -2.4836 -2.1398 28 1 -0.3666 -1.7789 -1.2306 29 1 -0.9407 -4.0161 -2.1815 30 1 -0.9968 -4.0157 -0.4018 31 1 1.3361 -4.9834 -2.1166 32 1 0.1866 -6.0218 -1.2403 33 1 3.0421 -6.1542 -0.7848 34 1 1.8505 -6.9912 0.2386 35 1 5.0359 -5.3822 0.1449 36 1 6.4872 -5.0411 2.1027 37 1 3.1952 -6.9021 5.2880 38 1 2.8629 -3.6161 0.8928 39 1 2.8791 -3.5964 -0.8868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232632404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:02 Heat of formation + Delta-G solvation = -51.396236 kcal Electronic energy + Delta-G solvation = -24053.001208 eV Core-core repulsion = 20432.236765 eV Total energy + Delta-G solvation = -3620.764443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.069 amu Computer time = 4.14 seconds Orbital eigenvalues (eV) -41.20148 -39.70615 -37.92623 -37.70246 -37.17888 -35.60201 -33.87660 -31.72670 -31.46920 -30.82041 -27.27344 -26.84175 -24.19521 -23.80081 -23.02963 -22.19225 -20.29018 -19.31306 -18.41571 -17.96049 -17.57552 -16.92935 -16.51918 -16.17615 -15.78393 -15.35215 -15.14031 -14.85248 -14.68560 -14.36428 -14.00729 -13.98467 -13.59432 -13.42513 -13.12935 -13.01662 -12.86877 -12.80473 -12.54622 -12.42081 -12.19400 -11.98347 -11.89073 -11.77447 -11.69051 -11.49645 -11.33504 -10.84294 -10.61805 -10.35924 -9.70201 -9.65401 -9.02940 -8.06429 -6.19930 -0.13041 -0.03946 0.86412 1.35049 1.38903 1.41063 1.51661 2.27170 2.43426 2.92084 3.20734 3.22518 3.65866 3.82580 4.04387 4.23234 4.25704 4.32427 4.35525 4.47014 4.60954 4.62911 4.71968 4.82866 4.87196 4.95108 4.98559 5.02478 5.14896 5.21813 5.26981 5.44208 5.46751 5.56211 5.66009 6.00128 6.17457 6.25327 6.37680 6.49239 6.60990 6.93856 7.47811 8.98326 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.011164 B = 0.004631 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.362841 B = 6045.032524 C = 7448.985580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.284 1.284 7 C -0.530 4.530 8 H 0.050 0.950 9 C 0.055 3.945 10 H -0.012 1.012 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.069 3.931 14 N -0.538 5.538 15 C 0.093 3.907 16 C -0.059 4.059 17 C -0.099 4.099 18 C -0.090 4.090 19 C -0.065 4.065 20 Cl -0.048 7.048 21 C 0.114 3.886 22 O -0.485 6.485 23 C -0.047 4.047 24 Cl -0.041 7.041 25 C 0.089 3.911 26 H 0.259 0.741 27 H 0.025 0.975 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.409 0.591 38 H 0.050 0.950 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.685 -17.792 3.002 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.210 1.210 7 C -0.569 4.569 8 H 0.069 0.931 9 C 0.036 3.964 10 H 0.006 0.994 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.058 4.058 14 N -0.263 5.263 15 C -0.034 4.034 16 C -0.060 4.060 17 C -0.117 4.117 18 C -0.109 4.109 19 C -0.093 4.093 20 Cl -0.019 7.019 21 C 0.067 3.933 22 O -0.298 6.298 23 C -0.075 4.075 24 Cl -0.012 7.012 25 C -0.039 4.039 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.179 0.821 36 H 0.183 0.817 37 H 0.268 0.732 38 H 0.068 0.932 39 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 9.016 -17.129 3.507 19.672 hybrid contribution 0.615 0.864 -0.157 1.072 sum 9.631 -16.265 3.350 19.197 Atomic orbital electron populations 1.70053 1.07159 1.26823 1.51542 1.25691 0.95592 1.02200 0.94975 0.85646 0.79257 0.80100 0.77524 1.19008 1.20443 1.21014 1.21542 0.92887 0.92210 1.50250 0.93145 1.18547 0.92989 0.91455 0.93431 0.99416 1.21448 0.99043 0.96299 0.97343 1.21567 0.97611 0.94923 1.00670 1.22010 0.94994 0.99082 0.89733 1.61996 1.23889 1.01444 1.38976 1.21127 0.93412 0.95034 0.93808 1.19872 0.95027 0.97859 0.93286 1.21309 0.91827 0.98148 1.00466 1.21314 1.02126 0.98213 0.89212 1.21310 0.90649 1.07027 0.90307 1.98368 1.66341 1.95128 1.42095 1.17896 0.89372 1.01157 0.84839 1.84870 1.82121 1.36444 1.26344 1.21178 0.87266 1.05365 0.93736 1.98374 1.15071 1.90375 1.97367 1.21900 0.95120 0.88724 0.98138 0.93215 0.95628 0.92794 0.91195 0.93629 0.94739 0.89166 0.92001 0.88400 0.82078 0.81689 0.73198 0.93180 0.96236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.30 11.35 21.45 0.24 -54.05 16 2 C 0.01 0.79 5.30 84.65 0.45 1.24 16 3 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 7 C -0.53 -29.72 8.57 25.60 0.22 -29.50 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.05 2.80 2.26 -11.49 -0.03 2.77 16 10 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 11 C -0.10 -4.93 5.02 30.67 0.15 -4.77 16 12 C -0.11 -4.14 6.09 30.64 0.19 -3.95 16 13 C 0.07 2.15 5.46 86.32 0.47 2.62 16 14 N -0.54 -18.12 4.61 -900.94 -4.16 -22.27 16 15 C 0.09 2.37 4.59 85.56 0.39 2.76 16 16 C -0.06 -1.53 3.74 -19.85 -0.07 -1.61 16 17 C -0.10 -2.18 9.01 22.28 0.20 -1.98 16 18 C -0.09 -1.90 9.83 22.28 0.22 -1.68 16 19 C -0.07 -1.56 6.33 22.41 0.14 -1.42 16 20 Cl -0.05 -1.06 28.50 -2.72 -0.08 -1.14 16 21 C 0.11 3.00 6.69 22.53 0.15 3.15 16 22 O -0.49 -11.65 12.42 -93.01 -1.16 -12.81 16 23 C -0.05 -1.32 6.33 22.41 0.14 -1.17 16 24 Cl -0.04 -1.18 27.07 -2.72 -0.07 -1.25 16 25 C 0.09 3.64 4.30 86.33 0.37 4.01 16 26 H 0.26 14.59 8.31 -92.71 -0.77 13.81 16 27 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 2.96 6.15 -2.38 -0.01 2.94 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 2.29 8.12 -2.39 -0.02 2.27 16 33 H 0.06 1.34 7.94 -2.39 -0.02 1.33 16 34 H 0.10 2.24 7.61 -2.39 -0.02 2.22 16 35 H 0.16 2.81 7.99 -2.91 -0.02 2.79 16 36 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.41 5.76 9.06 -74.06 -0.67 5.09 16 38 H 0.05 2.13 6.25 -2.39 -0.01 2.12 16 39 H 0.02 0.78 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -66.42 344.45 0.21 -66.21 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.41 Total: 8.37 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 3.00 Total: -29.55 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -3.91 Total: -76.33 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -1.16 Total: -12.81 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.15 Total: -2.39 kcal Total: -66.42 0.21 -66.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232632404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.816 kcal (2) G-P(sol) polarization free energy of solvation -66.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.15 seconds