Wall clock time and date at job start Tue Mar 31 2020 15:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 120.00052 * 2 1 4 4 H 1.48494 * 109.46968 * 270.00349 * 3 2 1 5 5 H 1.48498 * 109.46738 * 30.00187 * 3 2 1 6 6 H 1.48500 * 109.46999 * 150.00108 * 3 2 1 7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47107 * 179.97438 * 12 11 10 14 14 C 1.38459 * 120.01976 * 89.99985 * 13 12 11 15 15 F 1.35096 * 120.01818 * 359.97438 * 14 13 12 16 16 C 1.38443 * 119.96169 * 179.97438 * 14 13 12 17 17 C 1.38231 * 120.00353 * 359.97438 * 16 14 13 18 18 C 1.38206 * 120.03621 * 359.97438 * 17 16 14 19 19 C 1.50696 * 119.98346 * 179.97438 * 18 17 16 20 20 O 1.43754 * 109.62895 * 104.36573 * 19 18 17 21 21 C 1.44790 * 104.81293 * 215.80885 * 20 19 18 22 22 C 1.54913 * 101.72120 * 36.10697 * 21 20 19 23 23 O 1.43373 * 109.62815 * 345.00612 * 19 18 17 24 24 C 1.38291 * 120.01607 * 269.72112 * 13 12 11 25 25 Cl 1.73602 * 120.00435 * 0.02562 * 24 13 12 26 26 H 0.96998 * 120.00316 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46937 * 59.99856 * 9 7 2 28 28 H 1.09004 * 109.47318 * 300.00373 * 9 7 2 29 29 H 1.08995 * 109.47319 * 60.00217 * 10 9 7 30 30 H 1.09003 * 109.47435 * 299.99542 * 10 9 7 31 31 H 1.00908 * 110.99583 * 303.94989 * 11 10 9 32 32 H 1.09002 * 109.47043 * 299.99792 * 12 11 10 33 33 H 1.09001 * 109.47354 * 59.99854 * 12 11 10 34 34 H 1.08003 * 120.00056 * 179.97438 * 16 14 13 35 35 H 1.07991 * 119.98233 * 180.02562 * 17 16 14 36 36 H 1.08993 * 109.62978 * 224.61151 * 19 18 17 37 37 H 1.08993 * 110.97943 * 277.99542 * 21 20 19 38 38 H 1.09000 * 111.00660 * 154.22523 * 21 20 19 39 39 H 1.08998 * 110.69613 * 206.04203 * 22 21 20 40 40 H 1.09006 * 110.69782 * 82.83402 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6474 -7.3604 -0.0006 14 6 1.2856 -7.9511 -1.1994 15 9 1.6384 -7.3760 -2.3698 16 6 0.5622 -9.1315 -1.1981 17 6 0.2018 -9.7200 -0.0003 18 6 0.5638 -9.1309 1.1964 19 6 0.1698 -9.7732 2.5015 20 8 1.3136 -10.4174 3.0873 21 6 0.7845 -11.6073 3.7202 22 6 -0.3289 -12.0235 2.7268 23 8 -0.8450 -10.7582 2.2664 24 6 1.2902 -7.9529 1.1968 25 17 1.7489 -7.2166 2.7006 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6043 0.8894 30 1 2.8720 -3.6043 -0.8906 31 1 0.8742 -4.9845 0.7801 32 1 3.0640 -6.0348 -0.8901 33 1 3.0628 -6.0349 0.8899 34 1 0.2793 -9.5926 -2.1328 35 1 -0.3622 -10.6409 0.0004 36 1 -0.2091 -9.0127 3.1841 37 1 0.3668 -11.3753 4.6998 38 1 1.5481 -12.3813 3.7972 39 1 -1.1057 -12.5940 3.2359 40 1 0.0885 -12.5941 1.8972 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291098708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:55 Heat of formation + Delta-G solvation = -115.576558 kcal Electronic energy + Delta-G solvation = -25323.583551 eV Core-core repulsion = 21271.699665 eV Total energy + Delta-G solvation = -4051.883885 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.94336 -41.00971 -39.27101 -36.63417 -36.04407 -35.44559 -33.27192 -32.18253 -31.53209 -29.59519 -28.92271 -25.64835 -25.24411 -23.75355 -23.47346 -22.50369 -21.00131 -20.46637 -18.17161 -17.78574 -17.32726 -16.70900 -16.44574 -16.27860 -15.72258 -15.50959 -15.10842 -14.85096 -14.53086 -14.40140 -14.12764 -13.90323 -13.68515 -13.63170 -13.16240 -13.02468 -12.80791 -12.55329 -12.09837 -12.06076 -11.88218 -11.50153 -11.39715 -11.06349 -11.01140 -10.87486 -10.69127 -10.52434 -10.15196 -9.96837 -9.44503 -9.17116 -8.95789 -8.83224 -8.32335 -7.83699 -5.96575 -3.99103 0.69620 0.83988 1.86303 2.88836 3.24992 3.34613 3.40411 3.43707 3.48411 4.07280 4.10301 4.32408 4.41672 4.48349 4.50801 4.57326 4.65163 4.81981 4.93236 4.98489 5.06712 5.16646 5.25124 5.38931 5.39349 5.42494 5.59615 5.79663 5.85686 5.95380 5.98840 6.35043 6.41992 6.49974 6.57611 6.99551 7.43543 7.74532 7.82170 7.95290 8.10811 8.46194 9.08022 9.64410 11.14907 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.002672 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.960967 B =10478.295851 C =11237.825142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.067 3.933 11 N -0.681 5.681 12 C 0.092 3.908 13 C -0.106 4.106 14 C 0.145 3.855 15 F -0.121 7.121 16 C -0.157 4.157 17 C -0.051 4.051 18 C -0.122 4.122 19 C 0.281 3.719 20 O -0.362 6.362 21 C 0.014 3.986 22 C 0.018 3.982 23 O -0.376 6.376 24 C 0.017 3.983 25 Cl -0.043 7.043 26 H 0.260 0.740 27 H 0.026 0.974 28 H 0.014 0.986 29 H 0.018 0.982 30 H 0.060 0.940 31 H 0.337 0.663 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 -28.973 5.537 29.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.061 4.061 11 N -0.312 5.312 12 C -0.037 4.037 13 C -0.108 4.108 14 C 0.125 3.875 15 F -0.099 7.099 16 C -0.176 4.176 17 C -0.069 4.069 18 C -0.123 4.123 19 C 0.186 3.814 20 O -0.282 6.282 21 C -0.062 4.062 22 C -0.058 4.058 23 O -0.296 6.296 24 C -0.011 4.011 25 Cl -0.014 7.014 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.032 0.968 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.155 0.845 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.162 -28.622 4.847 29.030 hybrid contribution 0.821 1.046 0.891 1.600 sum 0.983 -27.576 5.738 28.184 Atomic orbital electron populations 1.69970 1.06031 1.26569 1.50658 1.25001 0.94838 0.99200 0.95329 0.86586 0.79786 0.83463 0.78108 1.20628 1.21238 1.19933 1.21169 0.92984 0.90961 1.50851 0.92730 1.19062 0.93998 0.90300 0.97782 1.22195 0.97083 0.87986 0.98861 1.60708 1.19220 1.01480 1.49817 1.20857 0.93813 0.86808 1.02243 1.19765 1.02080 0.98670 0.90289 1.17333 0.97057 0.92176 0.80968 1.91556 1.89570 1.83954 1.44864 1.21230 1.00822 0.95560 0.99992 1.20710 0.97070 0.99402 0.89739 1.19729 1.01739 0.95210 0.95671 1.22600 0.78304 0.89904 0.90631 1.89370 1.29702 1.37790 1.71378 1.24438 0.97039 0.87867 0.96891 1.24255 0.97173 0.86891 0.97493 1.88926 1.38685 1.17345 1.84678 1.20330 0.99103 0.94102 0.87517 1.98398 1.90639 1.82045 1.30310 0.92999 0.95583 0.96781 0.96382 0.92125 0.84515 0.89715 0.93436 0.83815 0.83718 0.88078 0.90281 0.87114 0.87862 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.03 0.70 5.23 -27.89 -0.15 0.55 16 10 C 0.07 1.45 5.62 -3.82 -0.02 1.43 16 11 N -0.68 -12.95 6.49 -115.05 -0.75 -13.70 16 12 C 0.09 1.46 5.24 -4.98 -0.03 1.44 16 13 C -0.11 -1.52 5.40 -104.52 -0.56 -2.08 16 14 C 0.14 1.97 7.24 -39.42 -0.29 1.68 16 15 F -0.12 -1.81 16.48 2.25 0.04 -1.77 16 16 C -0.16 -1.69 10.03 -39.51 -0.40 -2.09 16 17 C -0.05 -0.52 9.37 -39.60 -0.37 -0.89 16 18 C -0.12 -1.43 5.50 -104.58 -0.58 -2.01 16 19 C 0.28 2.90 3.55 36.00 0.13 3.03 16 20 O -0.36 -3.62 11.31 -59.04 -0.67 -4.29 16 21 C 0.01 0.08 7.95 38.17 0.30 0.38 16 22 C 0.02 0.10 8.07 38.17 0.31 0.41 16 23 O -0.38 -3.45 9.84 -59.04 -0.58 -4.03 16 24 C 0.02 0.23 6.31 -39.50 -0.25 -0.02 16 25 Cl -0.04 -0.57 25.95 -51.86 -1.35 -1.92 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.34 6.34 8.72 -39.29 -0.34 6.00 16 32 H 0.08 1.34 7.64 -51.93 -0.40 0.95 16 33 H 0.05 0.73 6.89 -51.93 -0.36 0.37 16 34 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.15 1.19 7.14 -52.49 -0.37 0.81 16 36 H 0.10 1.06 7.58 -51.93 -0.39 0.67 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 355.53 15.07 5.36 5.36 Total: -1.00 -32.66 355.53 -9.75 -42.41 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.21 Total: -0.44 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -2.31 Total: -11.98 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: -0.01 Total: -40.36 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -1.25 Total: -8.31 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.35 Total: -1.92 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.66 -9.75 -42.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291098708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.169 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds