Wall clock time and date at job start Tue Mar 31 2020 15:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 120.00052 * 2 1 4 4 H 1.48494 * 109.46968 * 270.00349 * 3 2 1 5 5 H 1.48498 * 109.46738 * 30.00187 * 3 2 1 6 6 H 1.48500 * 109.46999 * 150.00108 * 3 2 1 7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47107 * 179.97438 * 12 11 10 14 14 C 1.38459 * 120.01976 * 89.99985 * 13 12 11 15 15 F 1.35096 * 120.01818 * 359.97438 * 14 13 12 16 16 C 1.38443 * 119.96169 * 179.97438 * 14 13 12 17 17 C 1.38231 * 120.00353 * 359.97438 * 16 14 13 18 18 C 1.38206 * 120.03621 * 359.97438 * 17 16 14 19 19 C 1.50696 * 119.98346 * 179.97438 * 18 17 16 20 20 O 1.43754 * 109.62895 * 104.36573 * 19 18 17 21 21 C 1.44790 * 104.81293 * 215.80885 * 20 19 18 22 22 C 1.54913 * 101.72120 * 36.10697 * 21 20 19 23 23 O 1.43373 * 109.62815 * 345.00612 * 19 18 17 24 24 C 1.38291 * 120.01607 * 269.72112 * 13 12 11 25 25 Cl 1.73602 * 120.00435 * 0.02562 * 24 13 12 26 26 H 0.96998 * 120.00316 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46937 * 59.99856 * 9 7 2 28 28 H 1.09004 * 109.47318 * 300.00373 * 9 7 2 29 29 H 1.08995 * 109.47319 * 60.00217 * 10 9 7 30 30 H 1.09003 * 109.47435 * 299.99542 * 10 9 7 31 31 H 1.00908 * 110.99583 * 303.94989 * 11 10 9 32 32 H 1.09002 * 109.47043 * 299.99792 * 12 11 10 33 33 H 1.09001 * 109.47354 * 59.99854 * 12 11 10 34 34 H 1.08003 * 120.00056 * 179.97438 * 16 14 13 35 35 H 1.07991 * 119.98233 * 180.02562 * 17 16 14 36 36 H 1.08993 * 109.62978 * 224.61151 * 19 18 17 37 37 H 1.08993 * 110.97943 * 277.99542 * 21 20 19 38 38 H 1.09000 * 111.00660 * 154.22523 * 21 20 19 39 39 H 1.08998 * 110.69613 * 206.04203 * 22 21 20 40 40 H 1.09006 * 110.69782 * 82.83402 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6474 -7.3604 -0.0006 14 6 1.2856 -7.9511 -1.1994 15 9 1.6384 -7.3760 -2.3698 16 6 0.5622 -9.1315 -1.1981 17 6 0.2018 -9.7200 -0.0003 18 6 0.5638 -9.1309 1.1964 19 6 0.1698 -9.7732 2.5015 20 8 1.3136 -10.4174 3.0873 21 6 0.7845 -11.6073 3.7202 22 6 -0.3289 -12.0235 2.7268 23 8 -0.8450 -10.7582 2.2664 24 6 1.2902 -7.9529 1.1968 25 17 1.7489 -7.2166 2.7006 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6043 0.8894 30 1 2.8720 -3.6043 -0.8906 31 1 0.8742 -4.9845 0.7801 32 1 3.0640 -6.0348 -0.8901 33 1 3.0628 -6.0349 0.8899 34 1 0.2793 -9.5926 -2.1328 35 1 -0.3622 -10.6409 0.0004 36 1 -0.2091 -9.0127 3.1841 37 1 0.3668 -11.3753 4.6998 38 1 1.5481 -12.3813 3.7972 39 1 -1.1057 -12.5940 3.2359 40 1 0.0885 -12.5941 1.8972 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291098708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:55 Heat of formation + Delta-G solvation = -136.730005 kcal Electronic energy + Delta-G solvation = -25324.500833 eV Core-core repulsion = 21271.699665 eV Total energy + Delta-G solvation = -4052.801168 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.02164 -41.69725 -40.18102 -37.64863 -37.56842 -36.09175 -35.22195 -33.39796 -32.63351 -30.81294 -30.08807 -27.21663 -26.06124 -25.25897 -24.15419 -23.51407 -22.54550 -21.87976 -19.03501 -18.65708 -18.52084 -18.04264 -17.58620 -17.14588 -16.79044 -16.72189 -16.38777 -16.07688 -15.86753 -15.55667 -15.32835 -14.91302 -14.69019 -14.50030 -14.33859 -14.09357 -13.97591 -13.75550 -13.70417 -13.33934 -12.87232 -12.85409 -12.60675 -12.47688 -12.44427 -12.29852 -12.13435 -11.88048 -11.45010 -11.31275 -11.18930 -10.85993 -10.57635 -10.02489 -9.80109 -9.38987 -8.20982 -6.32806 -0.23905 -0.12700 0.86915 1.39668 1.41774 1.52659 2.09569 2.40092 2.55617 2.75494 3.12329 3.12946 3.28041 3.50166 3.59710 3.69079 3.74513 3.95917 4.06080 4.16637 4.21081 4.27790 4.36918 4.45202 4.57501 4.57805 4.64023 4.69783 4.77779 4.90389 4.94864 4.99118 5.02888 5.11185 5.41287 5.56572 5.63535 5.74506 5.96963 6.04463 6.19172 6.38962 6.83797 7.36355 8.91391 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.002672 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.960967 B =10478.295851 C =11237.825142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.034 3.966 10 C 0.085 3.915 11 N -0.687 5.687 12 C 0.097 3.903 13 C -0.124 4.124 14 C 0.124 3.876 15 F -0.134 7.134 16 C -0.144 4.144 17 C -0.041 4.041 18 C -0.125 4.125 19 C 0.284 3.716 20 O -0.383 6.383 21 C 0.008 3.992 22 C 0.014 3.986 23 O -0.388 6.388 24 C 0.007 3.993 25 Cl -0.050 7.050 26 H 0.264 0.736 27 H -0.006 1.006 28 H -0.009 1.009 29 H 0.023 0.977 30 H 0.061 0.939 31 H 0.337 0.663 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.174 0.826 35 H 0.172 0.828 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.694 -30.683 5.736 31.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.004 4.004 10 C -0.044 4.044 11 N -0.318 5.318 12 C -0.031 4.031 13 C -0.126 4.126 14 C 0.104 3.896 15 F -0.113 7.113 16 C -0.162 4.162 17 C -0.059 4.059 18 C -0.126 4.126 19 C 0.189 3.811 20 O -0.304 6.304 21 C -0.068 4.068 22 C -0.061 4.061 23 O -0.309 6.309 24 C -0.020 4.020 25 Cl -0.021 7.021 26 H 0.073 0.927 27 H 0.012 0.988 28 H 0.009 0.991 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.155 0.845 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.191 0.809 35 H 0.190 0.810 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.564 -30.365 5.052 30.788 hybrid contribution 0.634 1.410 0.868 1.773 sum 1.198 -28.955 5.920 29.578 Atomic orbital electron populations 1.70109 1.07868 1.27848 1.51348 1.25996 0.95787 1.03441 0.94570 0.85397 0.78605 0.78180 0.78545 1.19705 1.20617 1.18682 1.21595 0.93565 0.92116 1.51027 0.92032 1.18895 0.94229 0.92203 0.95031 1.21816 0.95711 0.87779 0.99075 1.60599 1.19790 1.01393 1.49985 1.20781 0.93530 0.86502 1.02298 1.19639 1.03334 0.98344 0.91278 1.17614 0.98333 0.93404 0.80257 1.91520 1.89917 1.84397 1.45443 1.21551 0.99009 0.94134 1.01530 1.21051 0.96149 0.99847 0.88881 1.20052 1.00784 0.94612 0.97157 1.22422 0.78694 0.90310 0.89684 1.89348 1.29979 1.39309 1.71785 1.24733 0.97888 0.87016 0.97129 1.24536 0.97840 0.85702 0.98048 1.88909 1.38553 1.18507 1.84935 1.20409 0.99866 0.94844 0.86901 1.98389 1.90781 1.82269 1.30642 0.92700 0.98778 0.99092 0.95880 0.92036 0.84538 0.89902 0.92970 0.80855 0.81040 0.88927 0.89402 0.84953 0.85443 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.54 -32.03 9.11 25.60 0.23 -31.80 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.89 5.23 29.85 0.16 2.04 16 10 C 0.08 3.78 5.62 86.30 0.49 4.26 16 11 N -0.69 -26.80 6.49 -517.92 -3.36 -30.16 16 12 C 0.10 3.15 5.24 85.56 0.45 3.60 16 13 C -0.12 -3.56 5.40 -19.80 -0.11 -3.67 16 14 C 0.12 3.30 7.24 22.37 0.16 3.46 16 15 F -0.13 -4.01 16.48 44.97 0.74 -3.26 16 16 C -0.14 -2.80 10.03 22.32 0.22 -2.57 16 17 C -0.04 -0.75 9.37 22.26 0.21 -0.54 16 18 C -0.12 -2.77 5.50 -19.84 -0.11 -2.88 16 19 C 0.28 5.53 3.55 71.23 0.25 5.79 16 20 O -0.38 -7.14 11.31 -126.22 -1.43 -8.56 16 21 C 0.01 0.07 7.95 72.64 0.58 0.65 16 22 C 0.01 0.11 8.07 72.64 0.59 0.70 16 23 O -0.39 -6.26 9.84 -126.22 -1.24 -7.50 16 24 C 0.01 0.20 6.31 22.32 0.14 0.34 16 25 Cl -0.05 -1.33 25.95 -2.72 -0.07 -1.40 16 26 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 27 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 28 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 29 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.34 13.12 8.72 -89.69 -0.78 12.34 16 32 H 0.08 2.67 7.64 -2.39 -0.02 2.65 16 33 H 0.05 1.63 6.89 -2.39 -0.02 1.61 16 34 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.17 2.21 7.14 -2.91 -0.02 2.19 16 36 H 0.09 1.92 7.58 -2.39 -0.02 1.90 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 Total: -1.00 -71.47 355.53 0.96 -70.50 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.29 Total: 11.25 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 3.72 Total: -20.16 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -3.08 Total: -88.14 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -2.67 Total: -16.07 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.74 Total: -3.26 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.07 Total: -1.40 kcal Total: -71.47 0.96 -70.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291098708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.229 kcal (2) G-P(sol) polarization free energy of solvation -71.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds