Wall clock time and date at job start Tue Mar 31 2020 16:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99837 * 2 1 4 4 H 1.48498 * 109.47218 * 269.99702 * 3 2 1 5 5 H 1.48502 * 109.47115 * 29.99952 * 3 2 1 6 6 H 1.48505 * 109.46801 * 149.99695 * 3 2 1 7 7 C 1.37874 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00078 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00139 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47079 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00105 * 89.99829 * 10 9 7 12 12 C 1.50695 * 109.47252 * 270.00107 * 11 10 9 13 13 C 1.38223 * 119.62059 * 94.97732 * 12 11 10 14 14 C 1.38628 * 119.16234 * 179.79423 * 13 12 11 15 15 C 1.38667 * 118.41807 * 0.46809 * 14 13 12 16 16 C 1.38182 * 119.16541 * 359.51074 * 15 14 13 17 17 N 1.31859 * 119.61731 * 275.00184 * 12 11 10 18 18 C 1.34772 * 119.99892 * 269.99753 * 10 9 7 19 19 O 1.21729 * 120.00234 * 180.02562 * 18 10 9 20 20 C 1.46243 * 120.00294 * 0.02562 * 18 10 9 21 21 C 1.35248 * 120.00477 * 185.60998 * 20 18 10 22 22 C 1.46396 * 119.99736 * 7.50289 * 21 20 18 23 23 N 1.30829 * 125.55238 * 227.37057 * 22 21 20 24 24 C 1.30805 * 115.81695 * 179.97438 * 23 22 21 25 25 C 1.34174 * 115.80557 * 0.02562 * 24 23 22 26 26 S 1.71053 * 109.15253 * 359.76350 * 25 24 23 27 27 H 0.97001 * 119.99984 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47091 * 59.99727 * 9 7 2 29 29 H 1.09000 * 109.46968 * 299.99934 * 9 7 2 30 30 H 1.08997 * 109.46966 * 149.99799 * 11 10 9 31 31 H 1.09003 * 109.47239 * 30.00206 * 11 10 9 32 32 H 1.08003 * 120.41878 * 0.02562 * 13 12 11 33 33 H 1.08008 * 120.78943 * 180.23508 * 14 13 12 34 34 H 1.08009 * 120.41543 * 179.78491 * 15 14 13 35 35 H 1.07997 * 119.61407 * 180.25103 * 16 15 14 36 36 H 1.08000 * 119.99929 * 5.61237 * 20 18 10 37 37 H 1.07992 * 120.00015 * 187.49937 * 21 20 18 38 38 H 1.08006 * 122.09688 * 180.02562 * 24 23 22 39 39 H 1.08000 * 125.42245 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6791 -4.1694 1.2693 12 6 3.9222 -3.4370 1.7043 13 6 3.8176 -2.3770 2.5852 14 6 4.9677 -1.7127 2.9824 15 6 6.1845 -2.1352 2.4688 16 6 6.2112 -3.2032 1.5923 17 7 5.0971 -3.8145 1.2398 18 6 2.6409 -4.1248 -1.1666 19 8 3.4315 -5.0504 -1.1667 20 6 2.1661 -3.5688 -2.4332 21 6 2.5153 -4.1534 -3.6017 22 6 3.2285 -5.4319 -3.5961 23 7 4.2950 -5.7111 -4.3005 24 6 4.7787 -6.9168 -4.1481 25 6 4.1167 -7.7077 -3.2900 26 16 2.7943 -6.8424 -2.6354 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5570 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.9074 -5.2272 1.1389 31 1 1.9057 -4.0556 2.0290 32 1 2.8524 -2.0725 2.9622 33 1 4.9168 -0.8835 3.6725 34 1 7.1003 -1.6386 2.7537 35 1 7.1553 -3.5408 1.1911 36 1 1.5367 -2.6911 -2.4354 37 1 2.2679 -3.6772 -4.5388 38 1 5.6561 -7.2546 -4.6798 39 1 4.3791 -8.7270 -3.0482 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346328708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:09 Heat of formation + Delta-G solvation = 84.102860 kcal Electronic energy + Delta-G solvation = -25477.872447 eV Core-core repulsion = 21899.752994 eV Total energy + Delta-G solvation = -3578.119454 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.93819 -39.21985 -38.67494 -35.32043 -33.41570 -32.70525 -31.99090 -31.29864 -29.31275 -27.71505 -26.52785 -24.92713 -23.22719 -22.96884 -22.38891 -21.11597 -19.71089 -18.49519 -17.17846 -16.71436 -16.66093 -16.29735 -15.79134 -15.51601 -15.18119 -14.83579 -14.46265 -14.21707 -13.92317 -13.47790 -13.39809 -13.04564 -12.72247 -12.68900 -12.58036 -12.43298 -12.02947 -11.68641 -11.39720 -11.35208 -11.01912 -10.95075 -10.78111 -10.24487 -9.85220 -9.75110 -9.64056 -9.41171 -9.07219 -8.97388 -8.82814 -8.66478 -8.49254 -7.85178 -7.44589 -6.24320 -4.30529 0.70814 1.50993 1.74590 1.75288 2.15647 2.31141 3.18243 3.26133 3.29755 3.31710 3.73157 4.02302 4.27677 4.42178 4.65109 4.75428 5.09304 5.14995 5.19262 5.32362 5.44313 5.45039 5.48597 5.57878 5.81018 5.86722 5.92637 5.97195 6.15120 6.19566 6.36750 6.45429 6.53862 6.60265 6.62277 6.72846 7.07405 7.12726 7.43942 7.71319 7.98526 8.13830 8.21814 8.50620 8.74304 8.94001 9.37586 10.82087 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011342 B = 0.004926 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.122721 B = 5682.602062 C = 7082.947078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.068 3.932 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.233 3.767 10 N -0.581 5.581 11 C 0.172 3.828 12 C 0.123 3.877 13 C -0.132 4.132 14 C -0.084 4.084 15 C -0.181 4.181 16 C 0.087 3.913 17 N -0.459 5.459 18 C 0.531 3.469 19 O -0.538 6.538 20 C -0.146 4.146 21 C -0.036 4.036 22 C 0.072 3.928 23 N -0.462 5.462 24 C 0.022 3.978 25 C -0.318 4.318 26 S 0.248 5.752 27 H 0.265 0.735 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.146 0.854 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.160 0.840 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.910 -8.928 0.890 9.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.077 0.923 9 C 0.114 3.886 10 N -0.310 5.310 11 C 0.047 3.953 12 C -0.016 4.016 13 C -0.152 4.152 14 C -0.110 4.110 15 C -0.201 4.201 16 C -0.070 4.070 17 N -0.168 5.168 18 C 0.320 3.680 19 O -0.419 6.419 20 C -0.172 4.172 21 C -0.059 4.059 22 C -0.200 4.200 23 N -0.177 5.177 24 C -0.136 4.136 25 C -0.459 4.459 26 S 0.509 5.491 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.163 0.837 36 H 0.174 0.826 37 H 0.166 0.834 38 H 0.177 0.823 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.581 -9.870 0.717 10.524 hybrid contribution 1.520 1.898 0.206 2.440 sum 5.101 -7.972 0.923 9.509 Atomic orbital electron populations 1.69907 1.05874 1.27298 1.49855 1.24873 0.94746 0.99041 0.94819 0.86611 0.79913 0.83266 0.78467 1.20451 1.21090 1.19878 1.21444 0.93502 0.90226 1.51660 0.92258 1.19572 0.87400 0.82750 0.98903 1.48136 1.44306 1.34856 1.03725 1.20112 0.91159 0.97493 0.86518 1.21611 0.93621 0.94015 0.92341 1.21984 0.99472 0.95624 0.98157 1.21493 0.92561 0.98483 0.98498 1.22031 0.98597 0.99231 1.00221 1.22626 0.96699 0.92958 0.94763 1.67564 0.98138 1.29536 1.21547 1.18424 0.82003 0.82764 0.84798 1.90893 1.34798 1.28717 1.87520 1.23688 1.00309 1.01484 0.91677 1.21377 0.95599 0.90353 0.98599 1.25963 0.96854 0.98899 0.98264 1.67003 1.09193 1.17779 1.23710 1.21369 1.02452 0.89052 1.00711 1.26508 1.06271 1.06607 1.06534 1.83427 1.25154 1.02334 1.38204 0.92512 0.94005 0.94360 0.89172 0.89392 0.84593 0.85470 0.85692 0.83711 0.82556 0.83432 0.82301 0.81628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.14 13.29 55.43 0.74 -22.40 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.53 -12.88 9.23 -34.44 -0.32 -13.19 16 8 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.23 5.06 4.88 -5.19 -0.03 5.04 16 10 N -0.58 -11.47 2.44 -178.15 -0.43 -11.90 16 11 C 0.17 3.05 5.76 -5.19 -0.03 3.02 16 12 C 0.12 2.29 6.36 -82.59 -0.53 1.77 16 13 C -0.13 -2.27 9.57 -39.44 -0.38 -2.65 16 14 C -0.08 -1.31 10.18 -39.28 -0.40 -1.71 16 15 C -0.18 -2.68 10.11 -39.44 -0.40 -3.07 16 16 C 0.09 1.45 11.18 -17.55 -0.20 1.25 16 17 N -0.46 -8.91 10.27 -9.48 -0.10 -9.01 16 18 C 0.53 10.60 7.26 -13.05 -0.09 10.50 16 19 O -0.54 -11.25 11.10 5.16 0.06 -11.19 16 20 C -0.15 -2.65 9.20 -37.43 -0.34 -3.00 16 21 C -0.04 -0.60 10.24 -37.37 -0.38 -0.98 16 22 C 0.07 1.28 5.82 -14.70 -0.09 1.19 16 23 N -0.46 -8.46 10.67 -11.69 -0.12 -8.59 16 24 C 0.02 0.35 11.24 -19.42 -0.22 0.14 16 25 C -0.32 -4.64 11.08 29.30 0.32 -4.32 16 26 S 0.25 3.92 19.55 -107.50 -2.10 1.82 16 27 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 28 H 0.04 0.93 6.17 -51.93 -0.32 0.61 16 29 H 0.04 0.86 7.89 -51.93 -0.41 0.45 16 30 H 0.09 1.60 7.42 -51.93 -0.39 1.21 16 31 H 0.09 1.35 7.79 -51.93 -0.40 0.95 16 32 H 0.14 2.24 8.06 -52.48 -0.42 1.82 16 33 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 34 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.15 2.04 8.06 -52.49 -0.42 1.61 16 36 H 0.16 2.85 6.31 -52.49 -0.33 2.52 16 37 H 0.15 2.01 8.06 -52.49 -0.42 1.58 16 38 H 0.16 2.05 8.06 -52.48 -0.42 1.63 16 39 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 353.87 15.07 5.33 5.33 Total: -1.00 -30.31 353.87 -9.18 -39.49 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.36 Total: 5.79 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -3.17 Total: -4.41 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.08 Total: -51.90 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.06 Total: -11.19 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -2.10 Total: 1.82 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.31 -9.18 -39.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346328708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.592 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds