Wall clock time and date at job start Tue Mar 31 2020 16:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99837 * 2 1 4 4 H 1.48498 * 109.47218 * 269.99702 * 3 2 1 5 5 H 1.48502 * 109.47115 * 29.99952 * 3 2 1 6 6 H 1.48505 * 109.46801 * 149.99695 * 3 2 1 7 7 C 1.37874 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00078 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00139 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47079 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00105 * 89.99829 * 10 9 7 12 12 C 1.50695 * 109.47252 * 270.00107 * 11 10 9 13 13 C 1.38223 * 119.62059 * 94.97732 * 12 11 10 14 14 C 1.38628 * 119.16234 * 179.79423 * 13 12 11 15 15 C 1.38667 * 118.41807 * 0.46809 * 14 13 12 16 16 C 1.38182 * 119.16541 * 359.51074 * 15 14 13 17 17 N 1.31859 * 119.61731 * 275.00184 * 12 11 10 18 18 C 1.34772 * 119.99892 * 269.99753 * 10 9 7 19 19 O 1.21729 * 120.00234 * 180.02562 * 18 10 9 20 20 C 1.46243 * 120.00294 * 0.02562 * 18 10 9 21 21 C 1.35248 * 120.00477 * 185.60998 * 20 18 10 22 22 C 1.46396 * 119.99736 * 7.50289 * 21 20 18 23 23 N 1.30829 * 125.55238 * 227.37057 * 22 21 20 24 24 C 1.30805 * 115.81695 * 179.97438 * 23 22 21 25 25 C 1.34174 * 115.80557 * 0.02562 * 24 23 22 26 26 S 1.71053 * 109.15253 * 359.76350 * 25 24 23 27 27 H 0.97001 * 119.99984 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47091 * 59.99727 * 9 7 2 29 29 H 1.09000 * 109.46968 * 299.99934 * 9 7 2 30 30 H 1.08997 * 109.46966 * 149.99799 * 11 10 9 31 31 H 1.09003 * 109.47239 * 30.00206 * 11 10 9 32 32 H 1.08003 * 120.41878 * 0.02562 * 13 12 11 33 33 H 1.08008 * 120.78943 * 180.23508 * 14 13 12 34 34 H 1.08009 * 120.41543 * 179.78491 * 15 14 13 35 35 H 1.07997 * 119.61407 * 180.25103 * 16 15 14 36 36 H 1.08000 * 119.99929 * 5.61237 * 20 18 10 37 37 H 1.07992 * 120.00015 * 187.49937 * 21 20 18 38 38 H 1.08006 * 122.09688 * 180.02562 * 24 23 22 39 39 H 1.08000 * 125.42245 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6791 -4.1694 1.2693 12 6 3.9222 -3.4370 1.7043 13 6 3.8176 -2.3770 2.5852 14 6 4.9677 -1.7127 2.9824 15 6 6.1845 -2.1352 2.4688 16 6 6.2112 -3.2032 1.5923 17 7 5.0971 -3.8145 1.2398 18 6 2.6409 -4.1248 -1.1666 19 8 3.4315 -5.0504 -1.1667 20 6 2.1661 -3.5688 -2.4332 21 6 2.5153 -4.1534 -3.6017 22 6 3.2285 -5.4319 -3.5961 23 7 4.2950 -5.7111 -4.3005 24 6 4.7787 -6.9168 -4.1481 25 6 4.1167 -7.7077 -3.2900 26 16 2.7943 -6.8424 -2.6354 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5570 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.9074 -5.2272 1.1389 31 1 1.9057 -4.0556 2.0290 32 1 2.8524 -2.0725 2.9622 33 1 4.9168 -0.8835 3.6725 34 1 7.1003 -1.6386 2.7537 35 1 7.1553 -3.5408 1.1911 36 1 1.5367 -2.6911 -2.4354 37 1 2.2679 -3.6772 -4.5388 38 1 5.6561 -7.2546 -4.6798 39 1 4.3791 -8.7270 -3.0482 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346328708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:08 Heat of formation + Delta-G solvation = 67.148467 kcal Electronic energy + Delta-G solvation = -25478.607645 eV Core-core repulsion = 21899.752994 eV Total energy + Delta-G solvation = -3578.854651 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.094 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.30952 -40.55363 -40.03087 -36.88689 -34.91288 -34.39798 -33.29968 -32.66187 -30.57359 -29.40496 -27.98431 -26.26034 -24.92244 -24.28195 -23.76913 -22.43295 -21.00071 -19.90133 -18.70537 -18.42414 -18.07251 -17.63248 -17.14364 -16.89432 -16.50144 -16.48447 -15.84045 -15.65150 -15.38216 -14.77106 -14.71251 -14.34735 -14.27604 -14.04330 -13.98196 -13.84901 -13.56559 -13.21362 -13.09016 -12.75076 -12.63341 -12.46207 -12.19640 -12.02144 -11.68342 -11.10214 -11.05829 -10.70010 -10.57616 -10.38604 -10.32873 -10.15633 -9.83722 -9.34769 -8.81781 -8.15646 -6.26393 -0.60259 0.23882 0.48093 0.49252 0.87252 1.06655 1.38524 1.43560 1.50141 2.03338 2.24936 2.45509 2.55095 3.08133 3.15779 3.38850 3.49086 3.80445 3.97736 4.05512 4.24942 4.27595 4.32991 4.40126 4.52677 4.61037 4.64900 4.67993 4.84186 4.92547 4.95019 5.03831 5.14590 5.29751 5.29981 5.35481 5.42833 5.71670 5.86833 5.89361 6.12027 6.59022 6.86598 6.87816 7.20884 7.35126 7.47165 8.89268 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011342 B = 0.004926 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.122721 B = 5682.602062 C = 7082.947078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.033 3.967 3 Si 0.937 3.063 4 H -0.281 1.281 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.039 0.961 9 C 0.248 3.752 10 N -0.583 5.583 11 C 0.170 3.830 12 C 0.103 3.897 13 C -0.146 4.146 14 C -0.089 4.089 15 C -0.171 4.171 16 C 0.071 3.929 17 N -0.494 5.494 18 C 0.526 3.474 19 O -0.551 6.551 20 C -0.172 4.172 21 C -0.013 4.013 22 C 0.038 3.962 23 N -0.484 5.484 24 C 0.003 3.997 25 C -0.306 4.306 26 S 0.256 5.744 27 H 0.266 0.734 28 H 0.037 0.963 29 H 0.031 0.969 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.136 0.864 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.152 0.848 37 H 0.175 0.825 38 H 0.186 0.814 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 -8.954 1.073 10.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.168 4.168 3 Si 0.764 3.236 4 H -0.207 1.207 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.058 0.942 9 C 0.128 3.872 10 N -0.312 5.312 11 C 0.046 3.954 12 C -0.035 4.035 13 C -0.166 4.166 14 C -0.115 4.115 15 C -0.190 4.190 16 C -0.086 4.086 17 N -0.204 5.204 18 C 0.317 3.683 19 O -0.434 6.434 20 C -0.197 4.197 21 C -0.036 4.036 22 C -0.233 4.233 23 N -0.199 5.199 24 C -0.154 4.154 25 C -0.447 4.447 26 S 0.516 5.484 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.154 0.846 33 H 0.173 0.827 34 H 0.180 0.820 35 H 0.182 0.818 36 H 0.169 0.831 37 H 0.193 0.807 38 H 0.203 0.797 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.868 -9.898 0.904 11.067 hybrid contribution 1.227 1.786 0.135 2.171 sum 6.095 -8.112 1.040 10.199 Atomic orbital electron populations 1.69969 1.06703 1.27846 1.50924 1.25372 0.95288 1.01234 0.94891 0.85868 0.78845 0.80730 0.78121 1.20692 1.20559 1.20093 1.21437 0.92455 0.91383 1.50825 0.94241 1.19254 0.87306 0.82528 0.98149 1.48084 1.44132 1.34401 1.04580 1.20229 0.91839 0.97130 0.86186 1.21650 0.93588 0.94942 0.93347 1.22098 1.00380 0.95750 0.98375 1.21901 0.92203 0.98810 0.98556 1.22406 0.99832 0.98170 0.98635 1.23096 0.96733 0.93552 0.95248 1.67518 0.99077 1.30991 1.22778 1.18704 0.81746 0.82594 0.85271 1.90867 1.35421 1.29348 1.87746 1.23537 1.02339 1.02250 0.91611 1.21708 0.93212 0.89560 0.99124 1.26166 0.97749 0.99913 0.99473 1.67001 1.09570 1.19151 1.24218 1.21825 1.03516 0.88564 1.01506 1.26918 1.04898 1.07804 1.05056 1.83392 1.25578 1.01856 1.37579 0.92439 0.94531 0.95062 0.89582 0.87663 0.84581 0.82726 0.81984 0.81763 0.83086 0.80743 0.79748 0.78390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.49 13.29 21.45 0.28 -47.21 16 2 C 0.03 1.63 5.46 84.65 0.46 2.09 16 3 Si 0.94 40.81 29.54 68.60 2.03 42.84 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.52 -25.55 9.23 25.60 0.24 -25.32 16 8 H 0.04 2.08 7.81 -2.91 -0.02 2.06 16 9 C 0.25 10.95 4.88 85.63 0.42 11.36 16 10 N -0.58 -23.42 2.44 -835.73 -2.04 -25.46 16 11 C 0.17 6.14 5.76 85.63 0.49 6.63 16 12 C 0.10 3.86 6.36 42.55 0.27 4.13 16 13 C -0.15 -4.95 9.57 22.36 0.21 -4.73 16 14 C -0.09 -2.58 10.18 22.47 0.23 -2.35 16 15 C -0.17 -4.64 10.11 22.36 0.23 -4.41 16 16 C 0.07 2.27 11.18 84.67 0.95 3.21 16 17 N -0.49 -19.13 10.27 -183.90 -1.89 -21.02 16 18 C 0.53 21.34 7.26 86.32 0.63 21.97 16 19 O -0.55 -23.24 11.10 -4.44 -0.05 -23.29 16 20 C -0.17 -6.33 9.20 23.66 0.22 -6.11 16 21 C -0.01 -0.44 10.24 23.71 0.24 -0.20 16 22 C 0.04 1.32 5.82 86.97 0.51 1.83 16 23 N -0.48 -17.26 10.67 -190.91 -2.04 -19.29 16 24 C 0.00 0.09 11.24 83.92 0.94 1.04 16 25 C -0.31 -8.29 11.08 66.89 0.74 -7.55 16 26 S 0.26 7.88 19.55 -56.49 -1.10 6.78 16 27 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 28 H 0.04 1.66 6.17 -2.39 -0.01 1.65 16 29 H 0.03 1.42 7.89 -2.39 -0.02 1.40 16 30 H 0.09 3.12 7.42 -2.39 -0.02 3.11 16 31 H 0.11 3.30 7.79 -2.39 -0.02 3.28 16 32 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 35 H 0.17 4.36 8.06 -2.91 -0.02 4.34 16 36 H 0.15 5.65 6.31 -2.91 -0.02 5.64 16 37 H 0.18 4.56 8.06 -2.91 -0.02 4.54 16 38 H 0.19 4.35 8.06 -2.91 -0.02 4.32 16 39 H 0.20 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -64.35 353.87 3.04 -61.30 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 1.08 Total: 23.76 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 6.77 Total: 1.59 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -5.68 Total: -112.98 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.05 Total: -23.29 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 16 Polarization: 7.88 SS G_CDS: -1.10 Total: 6.78 kcal Total: -64.35 3.04 -61.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346328708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.452 kcal (2) G-P(sol) polarization free energy of solvation -64.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds