Wall clock time and date at job start Tue Mar 31 2020 16:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47103 * 2 1 4 4 C 1.50695 * 109.47072 * 239.99831 * 2 1 3 5 5 H 1.08002 * 120.00507 * 239.99855 * 4 2 1 6 6 C 1.37877 * 119.99896 * 60.00109 * 4 2 1 7 7 N 1.31519 * 120.00010 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00275 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46944 * 89.99867 * 8 6 4 10 10 H 1.48500 * 109.47669 * 210.00204 * 8 6 4 11 11 H 1.48501 * 109.47009 * 330.00281 * 8 6 4 12 12 N 1.46501 * 109.46910 * 120.00124 * 2 1 3 13 13 C 1.34777 * 119.99794 * 274.99690 * 12 2 1 14 14 O 1.21714 * 120.00353 * 0.02562 * 13 12 2 15 15 C 1.46246 * 119.99872 * 180.02562 * 13 12 2 16 16 C 1.34993 * 119.99913 * 173.29614 * 15 13 12 17 17 C 1.46940 * 120.00446 * 349.92929 * 16 15 13 18 18 C 1.39933 * 120.21129 * 310.57878 * 17 16 15 19 19 C 1.37753 * 119.88104 * 179.97438 * 18 17 16 20 20 C 1.38575 * 120.31790 * 359.97380 * 19 18 17 21 21 C 1.38123 * 120.43880 * 0.02562 * 20 19 18 22 22 C 1.38605 * 120.10789 * 0.02562 * 21 20 19 23 23 O 1.35692 * 120.16090 * 180.02562 * 22 21 20 24 24 C 1.42900 * 116.99748 * 359.96042 * 23 22 21 25 25 F 1.39896 * 109.47210 * 59.99798 * 24 23 22 26 26 F 1.39904 * 109.46845 * 179.97438 * 24 23 22 27 27 F 1.39893 * 109.47097 * 299.99415 * 24 23 22 28 28 H 1.09000 * 109.47007 * 299.99847 * 1 2 3 29 29 H 1.08998 * 109.47365 * 59.99645 * 1 2 3 30 30 H 1.08997 * 109.47446 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99941 * 180.02562 * 7 6 4 32 32 H 0.96996 * 119.99839 * 94.99760 * 12 2 1 33 33 H 1.08000 * 119.99608 * 353.29989 * 15 13 12 34 34 H 1.08000 * 119.99968 * 169.93124 * 16 15 13 35 35 H 1.07992 * 120.05951 * 359.97438 * 18 17 16 36 36 H 1.07993 * 119.83789 * 179.97438 * 19 18 17 37 37 H 1.08004 * 119.77767 * 179.74912 * 20 19 18 38 38 H 1.07996 * 119.94697 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3224 -1.1195 -4.0079 9 1 1.3446 -2.1616 -4.4123 10 1 2.4872 -0.1402 -5.1120 11 1 3.6307 -1.7566 -3.7119 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.8572 1.1626 2.4119 15 6 2.6350 -0.7076 3.5511 16 6 2.8927 -0.0079 4.6764 17 6 2.8981 1.4611 4.6433 18 6 3.6252 2.1406 3.6595 19 6 3.6251 3.5179 3.6344 20 6 2.9077 4.2346 4.5789 21 6 2.1854 3.5774 5.5557 22 6 2.1739 2.1921 5.5983 23 8 1.4643 1.5454 6.5572 24 6 0.7511 2.3555 7.4938 25 9 -0.1762 3.1503 6.8116 26 9 0.0792 1.5333 8.4047 27 9 1.6518 3.1757 8.1816 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.7089 1.1614 -3.4844 32 1 2.2489 -1.6318 1.1526 33 1 2.7891 -1.7763 3.5324 34 1 3.0951 -0.5278 5.6011 35 1 4.1854 1.5862 2.9212 36 1 4.1868 4.0415 2.8752 37 1 2.9170 5.3143 4.5535 38 1 1.6288 4.1439 6.2876 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255229607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:04 Heat of formation + Delta-G solvation = -180.865877 kcal Electronic energy + Delta-G solvation = -28107.370471 eV Core-core repulsion = 23500.858748 eV Total energy + Delta-G solvation = -4606.511723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.56424 -48.29727 -48.14452 -40.34519 -38.95386 -37.45438 -34.98575 -33.54176 -32.38988 -30.31283 -29.91501 -28.55428 -26.05916 -25.27002 -24.11048 -22.60024 -22.02367 -20.16257 -19.70422 -19.32322 -19.26630 -18.82354 -17.36027 -16.57387 -16.02467 -15.80425 -15.29798 -15.17002 -15.02849 -14.89167 -14.61973 -14.55312 -14.47247 -14.27685 -14.22670 -14.02810 -13.85334 -13.44272 -13.11743 -13.05546 -12.55495 -12.38359 -11.90987 -11.70659 -11.49612 -11.12017 -11.04749 -10.95239 -10.75245 -10.33096 -10.24653 -9.79384 -9.15953 -9.04741 -8.57612 -8.49983 -7.99928 -7.84094 -6.13568 -4.23002 0.91271 1.40879 1.41778 1.94874 2.73356 3.23005 3.30032 3.31947 3.67060 3.72111 3.94530 3.97324 4.16019 4.40660 4.61963 4.77073 4.97934 5.15196 5.18700 5.33370 5.43978 5.56266 5.58383 5.96668 6.05024 6.21021 6.36198 6.42371 6.58055 6.66629 6.83739 6.97681 7.03392 7.15405 7.45784 7.56851 7.69516 7.91223 8.14308 8.67154 8.77648 9.13664 9.44899 10.92242 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.021875 B = 0.002887 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.712041 B = 9695.359183 C = 9907.801716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.701 5.701 13 C 0.520 3.480 14 O -0.543 6.543 15 C -0.187 4.187 16 C -0.047 4.047 17 C -0.050 4.050 18 C -0.009 4.009 19 C -0.139 4.139 20 C -0.075 4.075 21 C -0.201 4.201 22 C 0.109 3.891 23 O -0.307 6.307 24 C 0.603 3.397 25 F -0.164 7.164 26 F -0.135 7.135 27 F -0.168 7.168 28 H 0.014 0.986 29 H 0.089 0.911 30 H 0.025 0.975 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 2.262 19.185 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.348 5.348 13 C 0.307 3.693 14 O -0.424 6.424 15 C -0.208 4.208 16 C -0.067 4.067 17 C -0.051 4.051 18 C -0.028 4.028 19 C -0.157 4.157 20 C -0.093 4.093 21 C -0.220 4.220 22 C 0.067 3.933 23 O -0.227 6.227 24 C 0.512 3.488 25 F -0.146 7.146 26 F -0.117 7.117 27 F -0.150 7.150 28 H 0.034 0.966 29 H 0.108 0.892 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.221 0.779 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.595 3.053 19.066 19.640 hybrid contribution -0.026 -0.836 -0.729 1.110 sum 3.568 2.217 18.336 18.811 Atomic orbital electron populations 1.22067 0.98500 0.99052 1.00877 1.18730 0.90991 0.93970 0.79993 0.93284 1.21224 1.32469 1.13217 0.90371 0.92106 1.24887 0.94822 0.94930 0.99050 1.69908 1.35876 1.22394 1.23862 0.86459 0.79172 0.79287 0.82239 1.20560 1.21072 1.19851 1.46537 1.64168 1.13548 1.10519 1.18365 0.79803 0.87260 0.83892 1.90838 1.51470 1.15315 1.84769 1.23334 1.02585 1.00509 0.94367 1.22045 0.95532 0.91721 0.97434 1.18113 0.99461 0.92916 0.94564 1.21005 0.94735 0.94092 0.92929 1.21014 1.01239 0.94060 0.99435 1.20905 0.95056 0.99837 0.93515 1.21228 1.05510 0.91880 1.03345 1.18680 0.94823 0.91024 0.88809 1.86332 1.61591 1.34888 1.39905 1.19372 0.76567 0.75050 0.77799 1.93311 1.67157 1.74369 1.79792 1.93291 1.79565 1.73257 1.65567 1.93282 1.68071 1.73116 1.80548 0.96644 0.89225 0.95571 0.92588 0.77922 0.85176 0.84899 0.85261 0.85456 0.85534 0.85482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.64 2.56 -69.08 -0.18 6.46 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.70 11.32 55.43 0.63 -24.07 16 8 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.70 -14.27 5.06 -56.38 -0.29 -14.55 16 13 C 0.52 10.03 6.97 -13.04 -0.09 9.94 16 14 O -0.54 -12.16 12.10 5.18 0.06 -12.10 16 15 C -0.19 -2.69 9.95 -37.52 -0.37 -3.07 16 16 C -0.05 -0.64 9.33 -37.21 -0.35 -0.99 16 17 C -0.05 -0.77 4.33 -104.93 -0.45 -1.22 16 18 C -0.01 -0.15 6.77 -39.12 -0.26 -0.41 16 19 C -0.14 -1.96 10.02 -39.63 -0.40 -2.36 16 20 C -0.08 -0.98 10.03 -39.50 -0.40 -1.38 16 21 C -0.20 -2.76 8.25 -39.49 -0.33 -3.09 16 22 C 0.11 1.62 6.50 -38.64 -0.25 1.37 16 23 O -0.31 -4.23 9.83 -18.78 -0.18 -4.41 16 24 C 0.60 7.12 3.42 101.05 0.35 7.47 16 25 F -0.16 -2.06 15.56 2.25 0.04 -2.02 16 26 F -0.14 -1.48 17.53 2.25 0.04 -1.44 16 27 F -0.17 -1.83 15.57 2.25 0.04 -1.80 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.39 6.82 8.52 -40.82 -0.35 6.48 16 33 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.13 2.00 7.52 -52.49 -0.39 1.61 16 36 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 38 H 0.13 1.54 5.10 -52.49 -0.27 1.27 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -30.16 338.59 -6.17 -36.33 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -3.80 Total: 6.75 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.78 Total: -3.19 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.34 Total: -38.63 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.12 Total: -16.52 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.11 Total: -5.26 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.16 -6.17 -36.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255229607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.534 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds