Wall clock time and date at job start Tue Mar 31 2020 16:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46893 * 109.47266 * 2 1 4 4 C 1.46897 * 110.99975 * 305.07858 * 3 2 1 5 5 C 1.53000 * 109.46933 * 293.95454 * 4 3 2 6 6 N 1.46503 * 109.47238 * 180.02562 * 5 4 3 7 7 C 1.34776 * 120.00448 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99657 * 0.02562 * 7 6 5 9 9 C 1.50690 * 120.00291 * 179.97438 * 7 6 5 10 10 S 1.81009 * 109.47347 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99892 * 180.02562 * 10 9 7 12 12 H 1.07995 * 120.00333 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99355 * 180.02562 * 11 10 9 14 14 N 1.31632 * 120.00804 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99755 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47097 * 60.00274 * 15 13 11 17 17 H 1.48506 * 109.47417 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47411 * 299.99840 * 15 13 11 19 19 C 1.46908 * 111.00289 * 69.03032 * 3 2 1 20 20 C 1.50703 * 109.46798 * 74.39215 * 19 3 2 21 21 C 1.35134 * 127.24770 * 89.35250 * 20 19 3 22 22 C 1.37809 * 114.75702 * 179.86281 * 21 20 19 23 23 N 1.30079 * 116.88334 * 0.44985 * 22 21 20 24 24 S 1.69607 * 107.14926 * 359.75558 * 23 22 21 25 25 H 1.09003 * 109.46977 * 63.07433 * 1 2 3 26 26 H 1.08995 * 109.46905 * 183.07456 * 1 2 3 27 27 H 1.09001 * 109.47324 * 303.07880 * 1 2 3 28 28 H 1.08996 * 109.47476 * 239.99514 * 2 1 3 29 29 H 1.09006 * 109.46713 * 119.99832 * 2 1 3 30 30 H 1.08999 * 109.47384 * 53.95346 * 4 3 2 31 31 H 1.09002 * 109.47411 * 173.95215 * 4 3 2 32 32 H 1.09001 * 109.47396 * 299.99270 * 5 4 3 33 33 H 1.08992 * 109.47382 * 60.00251 * 5 4 3 34 34 H 0.97004 * 119.99784 * 359.97438 * 6 5 4 35 35 H 1.08999 * 109.47551 * 300.00347 * 9 7 6 36 36 H 1.09002 * 109.47240 * 60.00660 * 9 7 6 37 37 H 0.96991 * 120.00470 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.47336 * 194.39376 * 19 3 2 39 39 H 1.09003 * 109.46588 * 314.39281 * 19 3 2 40 40 H 1.08000 * 122.61937 * 0.03691 * 21 20 19 41 41 H 1.08004 * 121.56104 * 180.20765 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4521 2.1440 -1.1223 5 6 1.9762 1.5725 -2.4413 6 7 1.4107 2.3299 -3.5606 7 6 1.7343 2.0030 -4.8274 8 8 2.4933 1.0814 -5.0408 9 6 1.1521 2.7816 -5.9787 10 16 1.7722 2.1057 -7.5392 11 6 0.9563 3.1721 -8.6802 12 1 0.3049 3.9536 -8.3179 13 6 1.1509 3.0077 -10.0446 14 7 1.9453 2.0555 -10.4862 15 14 0.2855 4.1377 -11.2543 16 1 0.6956 5.5422 -11.0001 17 1 0.6578 3.7571 -12.6406 18 1 -1.1844 4.0127 -11.0840 19 6 1.7325 2.0449 1.2806 20 6 2.6738 1.5245 2.3362 21 6 3.8924 2.0122 2.6577 22 6 4.5355 1.3360 3.6717 23 7 3.9114 0.3182 4.1881 24 16 2.4264 0.1798 3.3805 25 1 -0.3633 0.4654 -0.9163 26 1 -0.3633 -1.0261 0.0551 27 1 -0.3634 0.5609 0.8611 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.3650 2.0677 -1.0998 31 1 1.7446 3.1906 -1.0380 32 1 3.0633 1.6489 -2.4640 33 1 1.6836 0.5260 -2.5256 34 1 0.8033 3.0667 -3.3900 35 1 0.0650 2.7050 -5.9565 36 1 1.4443 3.8283 -5.8942 37 1 2.0810 1.9404 -11.4396 38 1 1.8667 3.1213 1.1729 39 1 0.7043 1.8347 1.5751 40 1 4.3270 2.8669 2.1607 41 1 5.5137 1.6346 4.0187 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753078607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:09 Heat of formation + Delta-G solvation = 10.809957 kcal Electronic energy + Delta-G solvation = -22237.091938 eV Core-core repulsion = 18791.238217 eV Total energy + Delta-G solvation = -3445.853721 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.097 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.71040 -39.12143 -38.35302 -34.68014 -32.64575 -32.43499 -30.96339 -29.84388 -28.25755 -26.25375 -25.47613 -24.59484 -23.34813 -20.85685 -20.39045 -19.92179 -18.14372 -17.83211 -16.77416 -16.57096 -16.24936 -15.99127 -15.45915 -15.25639 -14.81018 -14.56879 -14.22699 -14.12880 -13.77939 -13.58831 -13.37198 -13.10465 -13.05245 -12.73965 -12.57907 -12.25936 -12.12052 -11.72268 -11.59395 -11.40841 -11.08044 -11.05389 -11.04190 -10.79685 -10.77582 -9.96368 -9.83311 -9.43356 -9.08588 -9.07095 -8.90086 -8.81724 -8.24767 -6.50838 -6.22084 -3.92955 0.29109 1.09912 1.49989 2.10363 2.92741 3.08981 3.22760 3.24071 3.28226 3.47481 3.88914 4.04725 4.19812 4.45377 4.51171 4.65202 4.70282 4.82547 4.89550 4.91600 4.96334 5.06602 5.11631 5.12852 5.16896 5.43999 5.46835 5.48500 5.58173 5.60590 5.73431 5.78772 5.88354 5.95164 6.12149 6.20610 6.44424 6.48259 6.63852 7.58416 7.67306 8.34251 8.59870 9.22939 10.85248 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.037373 B = 0.001756 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.018807 B =15938.987406 C =16051.648382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.037 3.963 3 N -0.526 5.526 4 C 0.041 3.959 5 C 0.125 3.875 6 N -0.740 5.740 7 C 0.533 3.467 8 O -0.515 6.515 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.124 3.876 20 C -0.154 4.154 21 C -0.190 4.190 22 C 0.091 3.909 23 N -0.462 5.462 24 S 0.245 5.755 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.269 0.731 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.158 0.842 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.213 1.564 29.378 29.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.091 4.091 3 N -0.250 5.250 4 C -0.087 4.087 5 C 0.001 3.999 6 N -0.395 5.395 7 C 0.318 3.682 8 O -0.389 6.389 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.200 1.200 19 C -0.006 4.006 20 C -0.285 4.285 21 C -0.225 4.225 22 C -0.107 4.107 23 N -0.282 5.282 24 S 0.397 5.603 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.230 0.770 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.176 0.824 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.097 -1.865 29.903 29.981 hybrid contribution -1.656 3.683 -1.133 4.195 sum -2.754 1.818 28.769 28.958 Atomic orbital electron populations 1.22437 0.97664 1.03100 1.02170 1.22393 0.93379 0.89543 1.03823 1.62030 1.59178 1.02568 1.01192 1.22343 0.98074 0.98199 0.90053 1.21154 0.99363 0.95807 0.83623 1.45911 1.50929 1.37036 1.05625 1.20284 0.80814 0.84041 0.83013 1.90712 1.34587 1.29290 1.84340 1.23527 1.04023 1.03006 0.99824 1.85418 1.62079 1.44802 0.91024 1.22825 1.33053 1.19543 0.93061 0.90976 1.24992 0.95242 0.95824 0.97520 1.70003 1.34818 1.30406 1.15028 0.86225 0.79642 0.80337 0.79291 1.19945 1.20805 1.19956 1.20498 0.94733 0.99056 0.86313 1.25318 0.99853 1.01288 1.02050 1.21338 0.94889 1.05436 1.00862 1.22893 1.01681 0.91733 0.94395 1.76829 1.04547 1.21519 1.25314 1.84113 1.21901 1.28006 1.26306 0.91671 0.91403 0.92635 0.89343 0.90530 0.93069 0.89875 0.90708 0.91556 0.76978 0.89255 0.89203 0.92111 0.88375 0.92177 0.82433 0.79933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.27 9.16 37.16 0.34 -0.93 16 2 C 0.04 0.28 5.64 -3.83 -0.02 0.25 16 3 N -0.53 -3.89 4.64 -236.07 -1.10 -4.99 16 4 C 0.04 0.30 4.71 -3.83 -0.02 0.28 16 5 C 0.13 1.37 5.60 -4.04 -0.02 1.35 16 6 N -0.74 -9.22 5.56 -60.30 -0.33 -9.55 16 7 C 0.53 9.69 7.85 -10.99 -0.09 9.61 16 8 O -0.52 -11.63 15.86 5.56 0.09 -11.54 16 9 C -0.15 -3.02 6.16 36.00 0.22 -2.79 16 10 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 11 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 15 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 C 0.12 0.73 5.46 -4.97 -0.03 0.70 16 20 C -0.15 -1.09 5.59 -35.41 -0.20 -1.29 16 21 C -0.19 -1.26 10.17 -40.84 -0.42 -1.68 16 22 C 0.09 0.65 11.27 -18.45 -0.21 0.44 16 23 N -0.46 -4.38 12.09 28.86 0.35 -4.03 16 24 S 0.25 1.95 22.39 -107.50 -2.41 -0.45 16 25 H 0.06 0.46 6.39 -51.93 -0.33 0.13 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.32 6.32 -51.93 -0.33 -0.01 16 28 H 0.09 0.77 6.72 -51.93 -0.35 0.42 16 29 H 0.08 0.58 6.19 -51.93 -0.32 0.26 16 30 H 0.05 0.33 5.94 -51.93 -0.31 0.02 16 31 H 0.08 0.51 7.84 -51.93 -0.41 0.11 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.80 6.66 -51.93 -0.35 0.46 16 34 H 0.40 3.64 8.47 -40.82 -0.35 3.30 16 35 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 36 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 37 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.10 0.46 7.76 -51.93 -0.40 0.05 16 39 H 0.06 0.31 6.10 -51.93 -0.32 -0.01 16 40 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.18 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -35.30 364.99 -10.18 -45.48 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.54 Total: -0.54 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.24 Total: -6.94 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.35 Total: -43.90 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -4.62 Total: -4.28 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.30 -10.18 -45.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753078607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.288 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds