Wall clock time and date at job start Tue Mar 31 2020 15:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86799 * 119.99921 * 2 1 4 4 H 1.48499 * 109.46907 * 239.99692 * 3 2 1 5 5 H 1.48504 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47157 * 119.99856 * 3 2 1 7 7 C 1.39044 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00156 * 202.42808 * 7 2 1 9 9 N 1.36878 * 120.00189 * 22.43085 * 7 2 1 10 10 C 1.34775 * 120.00340 * 208.36517 * 9 7 2 11 11 O 1.21596 * 119.99685 * 62.62893 * 10 9 7 12 12 C 1.47714 * 120.00223 * 242.63434 * 10 9 7 13 13 C 1.40020 * 120.94484 * 324.03755 * 12 10 9 14 14 N 1.32132 * 118.91679 * 179.74747 * 13 12 10 15 15 C 1.31877 * 120.96975 * 0.56479 * 14 13 12 16 16 C 1.50703 * 118.94312 * 179.70511 * 15 14 13 17 17 F 1.39896 * 109.47076 * 284.97686 * 16 15 14 18 18 F 1.39898 * 109.47187 * 44.97888 * 16 15 14 19 19 F 1.39900 * 109.47179 * 164.97811 * 16 15 14 20 20 N 1.31881 * 122.11477 * 359.68154 * 15 14 13 21 21 C 1.32133 * 120.97204 * 0.02562 * 20 15 14 22 22 C 1.46505 * 119.99781 * 28.64493 * 9 7 2 23 23 C 1.54262 * 110.03095 * 183.12296 * 22 9 7 24 24 C 1.54970 * 104.15805 * 217.12965 * 23 22 9 25 25 C 1.54885 * 102.77435 * 37.89273 * 24 23 22 26 26 C 1.53872 * 110.03466 * 65.90347 * 22 9 7 27 27 H 0.96998 * 120.00285 * 4.91112 * 1 2 3 28 28 H 1.08004 * 120.54120 * 0.02562 * 13 12 10 29 29 H 1.07999 * 120.54130 * 180.02562 * 21 20 15 30 30 H 1.09006 * 110.01266 * 304.51426 * 22 9 7 31 31 H 1.08997 * 110.48764 * 335.78393 * 23 22 9 32 32 H 1.09008 * 110.48529 * 98.42721 * 23 22 9 33 33 H 1.08992 * 110.72380 * 279.57327 * 24 23 22 34 34 H 1.09004 * 110.91816 * 156.29617 * 24 23 22 35 35 H 1.09000 * 110.48597 * 203.40111 * 25 24 23 36 36 H 1.09008 * 110.60183 * 80.81444 * 25 24 23 37 37 H 1.09001 * 110.03338 * 238.57610 * 26 22 9 38 38 H 1.08999 * 110.03146 * 0.02562 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.1014 1.6963 -1.2125 5 1 1.2826 2.7465 -0.0006 6 1 3.1014 1.6964 1.2125 7 6 2.0089 -1.2041 0.0005 8 1 3.0276 -1.2394 0.3574 9 7 1.4022 -2.3449 -0.4513 10 6 1.7761 -3.5450 0.0351 11 8 1.6279 -3.7954 1.2157 12 6 2.3659 -4.5559 -0.8660 13 6 1.9227 -4.6886 -2.1876 14 7 2.4819 -5.6029 -2.9603 15 6 3.4348 -6.3899 -2.4999 16 6 4.0361 -7.4217 -3.4191 17 9 3.1381 -8.4820 -3.5810 18 9 4.3002 -6.8401 -4.6638 19 9 5.2285 -7.9007 -2.8659 20 7 3.8786 -6.3027 -1.2611 21 6 3.3799 -5.4128 -0.4212 22 6 0.3507 -2.2619 -1.4680 23 6 -0.2240 -3.6655 -1.7496 24 6 -0.4981 -3.6639 -3.2749 25 6 0.7032 -2.8645 -3.8378 26 6 0.9397 -1.7525 -2.7951 27 1 -0.4850 0.8369 -0.0719 28 1 1.1396 -4.0508 -2.5705 29 1 3.7489 -5.3472 0.5917 30 1 -0.4424 -1.5944 -1.1308 31 1 0.5049 -4.4345 -1.4939 32 1 -1.1502 -3.8169 -1.1950 33 1 -1.4374 -3.1577 -3.4974 34 1 -0.5054 -4.6797 -3.6701 35 1 0.4532 -2.4321 -4.8067 36 1 1.5831 -3.5025 -3.9214 37 1 0.4319 -0.8383 -3.1024 38 1 2.0079 -1.5674 -2.6829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157358607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:23 Heat of formation + Delta-G solvation = -31.876751 kcal Electronic energy + Delta-G solvation = -29599.054138 eV Core-core repulsion = 25031.295820 eV Total energy + Delta-G solvation = -4567.758318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.17119 -47.69783 -47.65527 -41.84297 -39.48943 -37.57140 -34.67360 -33.68986 -32.68625 -31.65670 -28.68922 -27.53072 -27.39550 -25.13967 -24.71166 -23.39226 -21.02366 -20.27428 -19.45565 -18.85739 -18.67199 -18.60099 -17.63248 -17.21611 -16.70709 -16.06538 -15.46688 -15.06765 -14.71351 -14.63852 -14.41769 -14.36485 -14.09616 -14.08025 -13.80546 -13.78489 -13.61860 -13.18493 -12.89820 -12.55991 -12.16567 -11.95433 -11.68180 -11.61659 -11.30664 -10.99305 -10.93139 -10.92786 -10.69369 -10.58203 -10.46856 -10.11150 -10.03151 -9.50180 -9.34446 -9.18821 -9.02245 -7.73022 -6.47508 -4.05732 0.31522 1.03410 2.25439 2.80604 3.08951 3.11733 3.15525 3.36305 3.61235 3.64854 3.87952 4.31834 4.34564 4.49735 4.57643 4.68800 4.79692 4.88568 4.95899 5.04927 5.17100 5.47126 5.58031 5.72637 5.88619 5.94686 6.04546 6.09283 6.13142 6.26313 6.30580 6.43293 6.58050 6.77589 6.81742 7.14763 7.31392 7.74997 7.79578 8.30662 8.68876 9.06859 9.44180 10.42679 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.017856 B = 0.004248 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.740512 B = 6589.323669 C = 7024.377089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.036 3.964 3 Si 0.918 3.082 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.283 4.283 8 H 0.090 0.910 9 N -0.482 5.482 10 C 0.532 3.468 11 O -0.522 6.522 12 C -0.191 4.191 13 C 0.097 3.903 14 N -0.481 5.481 15 C 0.211 3.789 16 C 0.549 3.451 17 F -0.167 7.167 18 F -0.162 7.162 19 F -0.159 7.159 20 N -0.482 5.482 21 C 0.177 3.823 22 C 0.134 3.866 23 C -0.202 4.202 24 C -0.132 4.132 25 C -0.156 4.156 26 C -0.136 4.136 27 H 0.272 0.728 28 H 0.265 0.735 29 H 0.185 0.815 30 H 0.134 0.866 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.884 -6.794 -8.452 11.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.172 4.172 3 Si 0.744 3.256 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.409 4.409 8 H 0.108 0.892 9 N -0.204 5.204 10 C 0.321 3.679 11 O -0.400 6.400 12 C -0.201 4.201 13 C -0.066 4.066 14 N -0.195 5.195 15 C -0.059 4.059 16 C 0.493 3.507 17 F -0.149 7.149 18 F -0.143 7.143 19 F -0.140 7.140 20 N -0.195 5.195 21 C 0.011 3.989 22 C 0.030 3.970 23 C -0.239 4.239 24 C -0.170 4.170 25 C -0.194 4.194 26 C -0.175 4.175 27 H 0.083 0.917 28 H 0.279 0.721 29 H 0.202 0.798 30 H 0.151 0.849 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.054 -7.455 -8.344 11.377 hybrid contribution 0.170 1.278 0.428 1.359 sum 2.224 -6.177 -7.917 10.285 Atomic orbital electron populations 1.69789 1.06242 1.28425 1.43562 1.25351 0.95168 0.99931 0.96715 0.86114 0.79400 0.80760 0.79335 1.19659 1.20605 1.19595 1.19494 0.95664 0.83983 1.41757 0.89219 1.42879 1.36630 1.03088 1.37821 1.17362 0.83126 0.81180 0.86213 1.90655 1.53236 1.76758 1.19382 1.23111 1.00143 0.98588 0.98213 1.27271 0.96287 0.93636 0.89441 1.68130 1.07931 1.05546 1.37934 1.22550 0.95137 0.97045 0.91182 1.17133 0.76075 0.79283 0.78235 1.93233 1.67892 1.58123 1.95608 1.93238 1.93870 1.84160 1.43080 1.93239 1.46766 1.88708 1.85292 1.67952 1.27304 1.21592 1.02693 1.23367 0.90039 0.86618 0.98901 1.22118 0.92956 0.94751 0.87168 1.24225 1.03233 0.99794 0.96694 1.22600 0.99338 1.00709 0.94315 1.22942 0.98314 0.98494 0.99627 1.22632 1.02655 0.97709 0.94467 0.91702 0.72066 0.79799 0.84861 0.88434 0.90483 0.90019 0.90891 0.91074 0.90118 0.91547 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.36 10.98 55.50 0.61 -19.75 16 2 C 0.04 0.84 5.00 -17.45 -0.09 0.75 16 3 Si 0.92 18.42 29.61 -169.99 -5.03 13.38 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.28 -6.85 8.80 -15.00 -0.13 -6.98 16 8 H 0.09 2.17 7.93 -52.48 -0.42 1.76 16 9 N -0.48 -10.95 2.55 -107.65 -0.27 -11.22 16 10 C 0.53 11.88 5.24 -12.39 -0.06 11.81 16 11 O -0.52 -13.18 17.69 5.28 0.09 -13.09 16 12 C -0.19 -3.63 5.40 -104.69 -0.57 -4.19 16 13 C 0.10 1.70 6.89 -16.76 -0.12 1.58 16 14 N -0.48 -8.19 10.00 -34.76 -0.35 -8.54 16 15 C 0.21 3.55 7.09 -157.05 -1.11 2.44 16 16 C 0.55 8.12 3.49 36.01 0.13 8.24 16 17 F -0.17 -2.38 17.30 2.25 0.04 -2.34 16 18 F -0.16 -2.33 17.19 2.25 0.04 -2.29 16 19 F -0.16 -2.29 16.86 2.25 0.04 -2.25 16 20 N -0.48 -8.25 9.81 -10.38 -0.10 -8.35 16 21 C 0.18 3.08 10.93 -16.76 -0.18 2.89 16 22 C 0.13 2.65 2.65 -66.81 -0.18 2.47 16 23 C -0.20 -3.42 5.26 -25.03 -0.13 -3.55 16 24 C -0.13 -1.79 6.25 -24.70 -0.15 -1.94 16 25 C -0.16 -2.22 6.12 -25.07 -0.15 -2.38 16 26 C -0.14 -2.35 5.95 -25.62 -0.15 -2.50 16 27 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 28 H 0.27 4.34 0.03 -92.76 0.00 4.34 16 29 H 0.19 2.84 8.06 -52.49 -0.42 2.42 16 30 H 0.13 2.97 5.59 -51.93 -0.29 2.68 16 31 H 0.10 1.75 2.35 -100.70 -0.24 1.51 16 32 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.20 5.55 -51.92 -0.29 0.91 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 LS Contribution 318.49 15.07 4.80 4.80 Total: -1.00 -26.36 318.49 -6.34 -32.71 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -3.30 Total: 8.29 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -2.91 Total: 8.64 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.11 Total: -47.86 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 0.12 Total: -6.88 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.36 -6.34 -32.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157358607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.831 kcal (2) G-P(sol) polarization free energy of solvation -26.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds