Wall clock time and date at job start Tue Mar 31 2020 15:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00246 * 2 1 4 4 H 1.48499 * 109.47195 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47093 * 300.00010 * 3 2 1 6 6 H 1.48500 * 109.46742 * 60.00134 * 3 2 1 7 7 C 1.38822 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99861 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00307 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.84483 * 23.80737 * 10 9 7 12 12 C 1.53777 * 113.61778 * 154.99882 * 10 9 7 13 13 C 1.53780 * 87.08124 * 89.20046 * 12 10 9 14 14 H 1.09001 * 113.61874 * 270.80158 * 13 12 10 15 15 N 1.46504 * 113.61329 * 139.97941 * 13 12 10 16 16 C 1.34777 * 119.99893 * 156.53567 * 15 13 12 17 17 O 1.21558 * 119.99917 * 359.97438 * 16 15 13 18 18 C 1.47832 * 120.00173 * 180.02562 * 16 15 13 19 19 C 1.40025 * 120.56358 * 180.22791 * 18 16 15 20 20 C 1.38353 * 118.29045 * 180.24275 * 19 18 16 21 21 C 1.38356 * 119.30445 * 359.74788 * 20 19 18 22 22 C 1.50699 * 119.45994 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.46834 * 185.02124 * 22 21 20 24 24 F 1.39895 * 109.47278 * 305.02311 * 22 21 20 25 25 F 1.39893 * 109.46977 * 65.02549 * 22 21 20 26 26 N 1.31930 * 121.07882 * 0.02562 * 21 20 19 27 27 C 1.31699 * 121.87719 * 359.97223 * 26 21 20 28 28 C 1.53779 * 87.17154 * 25.39126 * 13 12 10 29 29 H 0.96996 * 120.00126 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99865 * 359.97438 * 9 7 2 31 31 H 1.09008 * 113.61272 * 334.65691 * 12 10 9 32 32 H 1.09000 * 113.69647 * 203.76464 * 12 10 9 33 33 H 0.96996 * 119.99960 * 336.53385 * 15 13 12 34 34 H 1.07997 * 120.85515 * 359.97438 * 19 18 16 35 35 H 1.08005 * 120.34843 * 179.76558 * 20 19 18 36 36 H 1.08002 * 119.71152 * 179.97438 * 27 26 21 37 37 H 1.09003 * 113.61744 * 89.15275 * 28 13 12 38 38 H 1.08999 * 113.61829 * 220.06387 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 1 3.0659 -3.5641 0.4031 12 6 1.2606 -4.8291 0.5939 13 6 0.7215 -5.0801 -0.8243 14 1 -0.1903 -4.5267 -1.0492 15 7 0.6258 -6.4999 -1.1729 16 6 -0.2308 -6.9019 -2.1326 17 8 -0.9245 -6.0865 -2.7085 18 6 -0.3278 -8.3345 -2.4841 19 6 -1.2103 -8.7645 -3.4825 20 6 -1.2667 -10.1167 -3.7699 21 6 -0.4532 -10.9918 -3.0722 22 6 -0.5122 -12.4654 -3.3820 23 9 0.3032 -13.1635 -2.4847 24 9 -1.8312 -12.9152 -3.2604 25 9 -0.0630 -12.6855 -4.6884 26 7 0.3724 -10.5574 -2.1394 27 6 0.4622 -9.2804 -1.8299 28 6 1.9986 -4.4020 -1.3475 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3880 0.0002 31 1 0.4937 -4.5194 1.3040 32 1 1.8865 -5.6372 0.9725 33 1 1.1791 -7.1505 -0.7131 34 1 -1.8342 -8.0594 -4.0115 35 1 -1.9383 -10.4853 -4.5312 36 1 1.1499 -8.9633 -1.0599 37 1 2.8280 -5.0924 -1.5013 38 1 1.8269 -3.7480 -2.2025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020449607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:09 Heat of formation + Delta-G solvation = -109.212343 kcal Electronic energy + Delta-G solvation = -26642.312647 eV Core-core repulsion = 22071.200805 eV Total energy + Delta-G solvation = -4571.111841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.60012 -48.14266 -48.03318 -41.22898 -39.68678 -38.05395 -34.36208 -33.39357 -33.13961 -32.27700 -29.79661 -27.60183 -25.21767 -24.73759 -24.51194 -23.59688 -22.60546 -21.00091 -19.36694 -19.06015 -18.99202 -18.92207 -17.81320 -17.49896 -17.03206 -15.87043 -15.67822 -15.39331 -15.01507 -15.00915 -14.90133 -14.81697 -14.50268 -14.26234 -14.20813 -14.18634 -13.99425 -13.88446 -13.65039 -13.15851 -12.81482 -12.51528 -12.23483 -12.09133 -11.75139 -10.93670 -10.88409 -10.63646 -10.62663 -10.37899 -10.18744 -10.07228 -10.04806 -9.82841 -9.73430 -9.00284 -8.89256 -7.06557 -5.84251 -3.14581 -0.25649 0.49175 1.93114 2.32683 2.89887 3.03616 3.17716 3.37162 3.39734 3.45326 3.47777 3.89373 3.94214 4.08401 4.27457 4.36714 4.43283 4.51737 4.81232 4.93548 5.12898 5.20574 5.29833 5.38851 5.40547 5.69103 5.79505 5.89531 5.98878 6.04916 6.25350 6.48351 6.61057 6.67052 6.91384 6.91748 7.36086 7.65446 8.00151 8.33730 9.44835 10.00164 10.33936 11.37886 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.038947 B = 0.001938 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.749599 B =14442.218447 C =14751.371006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.705 5.705 10 C 0.172 3.828 11 H 0.070 0.930 12 C -0.164 4.164 13 C 0.123 3.877 14 H 0.116 0.884 15 N -0.706 5.706 16 C 0.554 3.446 17 O -0.521 6.521 18 C -0.147 4.147 19 C -0.015 4.015 20 C -0.125 4.125 21 C 0.051 3.949 22 C 0.522 3.478 23 F -0.160 7.160 24 F -0.170 7.170 25 F -0.170 7.170 26 N -0.444 5.444 27 C 0.137 3.863 28 C -0.184 4.184 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.396 0.604 34 H 0.164 0.836 35 H 0.155 0.845 36 H 0.174 0.826 37 H 0.070 0.930 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 -26.336 -5.747 26.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.344 5.344 10 C 0.059 3.941 11 H 0.088 0.912 12 C -0.204 4.204 13 C 0.020 3.980 14 H 0.134 0.866 15 N -0.356 5.356 16 C 0.339 3.661 17 O -0.398 6.398 18 C -0.153 4.153 19 C -0.042 4.042 20 C -0.145 4.145 21 C -0.088 4.088 22 C 0.467 3.533 23 F -0.141 7.141 24 F -0.151 7.151 25 F -0.151 7.151 26 N -0.152 5.152 27 C -0.022 4.022 28 C -0.226 4.226 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.231 0.769 34 H 0.181 0.819 35 H 0.173 0.827 36 H 0.191 0.809 37 H 0.089 0.911 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.855 -26.183 -5.697 26.809 hybrid contribution -0.151 0.844 -0.340 0.923 sum -1.005 -25.338 -6.037 26.067 Atomic orbital electron populations 1.69668 1.05167 1.25820 1.57033 1.24795 0.95548 0.97895 1.02511 0.86090 0.78789 0.83892 0.77220 1.20460 1.21780 1.21795 1.19309 0.91149 0.83839 1.43418 0.90828 1.42208 1.05775 0.99422 1.86948 1.20933 0.95361 0.85389 0.92430 0.91189 1.23914 1.00847 1.00093 0.95523 1.22794 1.00194 0.78582 0.96405 0.86568 1.46095 1.40975 1.10497 1.38064 1.17936 0.80780 0.86694 0.80702 1.90853 1.43316 1.53836 1.51757 1.21448 0.99148 0.95778 0.98883 1.21836 0.94202 0.95165 0.92951 1.21847 0.99009 0.93502 1.00161 1.21139 0.97374 0.93342 0.96985 1.17844 0.74216 0.86441 0.74809 1.93250 1.72653 1.80731 1.67503 1.93246 1.35768 1.90417 1.95673 1.93250 1.89121 1.95456 1.37264 1.67209 1.17502 1.17742 1.12774 1.23030 0.95766 0.86513 0.96893 1.24371 0.95952 0.99761 1.02560 0.93372 0.77971 0.90627 0.90147 0.76873 0.81871 0.82686 0.80920 0.91120 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -16.96 5.31 -52.55 -0.28 -17.23 16 10 C 0.17 3.15 4.56 -67.03 -0.31 2.84 16 11 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 12 C -0.16 -2.34 7.58 -25.92 -0.20 -2.54 16 13 C 0.12 1.84 4.09 -67.12 -0.27 1.56 16 14 H 0.12 2.12 7.50 -51.93 -0.39 1.73 16 15 N -0.71 -7.98 5.32 -53.96 -0.29 -8.27 16 16 C 0.55 7.00 7.78 -12.34 -0.10 6.91 16 17 O -0.52 -8.82 16.04 5.31 0.09 -8.73 16 18 C -0.15 -1.41 5.89 -104.82 -0.62 -2.03 16 19 C -0.02 -0.13 9.72 -38.87 -0.38 -0.51 16 20 C -0.13 -0.90 9.59 -39.50 -0.38 -1.28 16 21 C 0.05 0.44 6.27 -82.51 -0.52 -0.07 16 22 C 0.52 4.45 3.31 36.01 0.12 4.57 16 23 F -0.16 -1.56 16.85 2.25 0.04 -1.53 16 24 F -0.17 -1.39 17.15 2.25 0.04 -1.35 16 25 F -0.17 -1.43 17.28 2.25 0.04 -1.39 16 26 N -0.44 -4.24 9.71 -9.13 -0.09 -4.33 16 27 C 0.14 1.13 10.71 -17.13 -0.18 0.94 16 28 C -0.18 -2.98 7.69 -25.83 -0.20 -3.18 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.39 9.95 7.90 -40.82 -0.32 9.62 16 31 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 32 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 33 H 0.40 3.05 6.78 -40.82 -0.28 2.77 16 34 H 0.16 1.27 7.74 -52.49 -0.41 0.87 16 35 H 0.16 0.70 8.06 -52.48 -0.42 0.27 16 36 H 0.17 0.90 6.42 -52.49 -0.34 0.57 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -32.48 345.42 -6.63 -39.11 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -3.81 Total: 8.46 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.27 Total: 0.03 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.07 Total: -56.75 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.12 Total: -4.26 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.48 -6.63 -39.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020449607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.104 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds