Wall clock time and date at job start Tue Mar 31 2020 15:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00246 * 2 1 4 4 H 1.48499 * 109.47195 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47093 * 300.00010 * 3 2 1 6 6 H 1.48500 * 109.46742 * 60.00134 * 3 2 1 7 7 C 1.38822 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99861 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00307 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.84483 * 23.80737 * 10 9 7 12 12 C 1.53777 * 113.61778 * 154.99882 * 10 9 7 13 13 C 1.53780 * 87.08124 * 89.20046 * 12 10 9 14 14 H 1.09001 * 113.61874 * 270.80158 * 13 12 10 15 15 N 1.46504 * 113.61329 * 139.97941 * 13 12 10 16 16 C 1.34777 * 119.99893 * 156.53567 * 15 13 12 17 17 O 1.21558 * 119.99917 * 359.97438 * 16 15 13 18 18 C 1.47832 * 120.00173 * 180.02562 * 16 15 13 19 19 C 1.40025 * 120.56358 * 180.22791 * 18 16 15 20 20 C 1.38353 * 118.29045 * 180.24275 * 19 18 16 21 21 C 1.38356 * 119.30445 * 359.74788 * 20 19 18 22 22 C 1.50699 * 119.45994 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.46834 * 185.02124 * 22 21 20 24 24 F 1.39895 * 109.47278 * 305.02311 * 22 21 20 25 25 F 1.39893 * 109.46977 * 65.02549 * 22 21 20 26 26 N 1.31930 * 121.07882 * 0.02562 * 21 20 19 27 27 C 1.31699 * 121.87719 * 359.97223 * 26 21 20 28 28 C 1.53779 * 87.17154 * 25.39126 * 13 12 10 29 29 H 0.96996 * 120.00126 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99865 * 359.97438 * 9 7 2 31 31 H 1.09008 * 113.61272 * 334.65691 * 12 10 9 32 32 H 1.09000 * 113.69647 * 203.76464 * 12 10 9 33 33 H 0.96996 * 119.99960 * 336.53385 * 15 13 12 34 34 H 1.07997 * 120.85515 * 359.97438 * 19 18 16 35 35 H 1.08005 * 120.34843 * 179.76558 * 20 19 18 36 36 H 1.08002 * 119.71152 * 179.97438 * 27 26 21 37 37 H 1.09003 * 113.61744 * 89.15275 * 28 13 12 38 38 H 1.08999 * 113.61829 * 220.06387 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 1 3.0659 -3.5641 0.4031 12 6 1.2606 -4.8291 0.5939 13 6 0.7215 -5.0801 -0.8243 14 1 -0.1903 -4.5267 -1.0492 15 7 0.6258 -6.4999 -1.1729 16 6 -0.2308 -6.9019 -2.1326 17 8 -0.9245 -6.0865 -2.7085 18 6 -0.3278 -8.3345 -2.4841 19 6 -1.2103 -8.7645 -3.4825 20 6 -1.2667 -10.1167 -3.7699 21 6 -0.4532 -10.9918 -3.0722 22 6 -0.5122 -12.4654 -3.3820 23 9 0.3032 -13.1635 -2.4847 24 9 -1.8312 -12.9152 -3.2604 25 9 -0.0630 -12.6855 -4.6884 26 7 0.3724 -10.5574 -2.1394 27 6 0.4622 -9.2804 -1.8299 28 6 1.9986 -4.4020 -1.3475 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3880 0.0002 31 1 0.4937 -4.5194 1.3040 32 1 1.8865 -5.6372 0.9725 33 1 1.1791 -7.1505 -0.7131 34 1 -1.8342 -8.0594 -4.0115 35 1 -1.9383 -10.4853 -4.5312 36 1 1.1499 -8.9633 -1.0599 37 1 2.8280 -5.0924 -1.5013 38 1 1.8269 -3.7480 -2.2025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020449607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:07 Heat of formation + Delta-G solvation = -131.699276 kcal Electronic energy + Delta-G solvation = -26643.287753 eV Core-core repulsion = 22071.200805 eV Total energy + Delta-G solvation = -4572.086948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.109 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -51.26647 -48.79147 -48.72638 -42.00437 -40.74483 -39.31096 -35.82871 -34.64053 -33.99407 -33.24027 -31.61845 -28.39464 -26.51227 -26.25074 -25.23401 -24.87183 -23.73894 -21.99211 -20.45883 -19.89846 -19.64905 -19.63594 -19.33934 -18.80504 -17.95408 -17.01437 -16.61759 -16.34243 -16.31703 -15.97227 -15.73517 -15.64247 -15.49782 -15.16747 -15.14938 -14.98893 -14.88399 -14.86975 -14.59573 -14.39963 -14.26614 -13.63678 -13.32911 -13.28580 -13.16973 -12.84055 -12.61230 -12.11801 -11.84661 -11.75402 -11.50224 -11.31250 -11.26647 -10.91087 -10.82983 -10.73223 -10.06426 -9.02117 -7.95625 -5.24787 -0.96317 -0.12685 1.27243 1.47776 1.48204 1.48968 1.58883 1.94662 2.37036 2.39050 2.55653 2.72928 3.24159 3.33228 3.36777 3.39739 3.57431 3.64304 3.71154 3.73883 3.83913 3.90695 4.30310 4.31311 4.34754 4.56698 4.74581 4.81455 4.85694 5.01918 5.06939 5.15695 5.22488 5.31000 5.51180 5.65717 6.26275 6.27401 6.42313 7.07265 7.32203 8.09017 8.29290 9.28011 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.038947 B = 0.001938 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.749599 B =14442.218447 C =14751.371006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.297 1.297 6 H -0.294 1.294 7 C -0.240 4.240 8 H 0.082 0.918 9 N -0.723 5.723 10 C 0.149 3.851 11 H 0.079 0.921 12 C -0.138 4.138 13 C 0.131 3.869 14 H 0.075 0.925 15 N -0.689 5.689 16 C 0.556 3.444 17 O -0.573 6.573 18 C -0.157 4.157 19 C -0.017 4.017 20 C -0.115 4.115 21 C 0.044 3.956 22 C 0.526 3.474 23 F -0.168 7.168 24 F -0.167 7.167 25 F -0.169 7.169 26 N -0.462 5.462 27 C 0.148 3.852 28 C -0.171 4.171 29 H 0.250 0.750 30 H 0.372 0.628 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.418 0.582 34 H 0.166 0.834 35 H 0.183 0.817 36 H 0.204 0.796 37 H 0.108 0.892 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.631 -28.571 -5.445 29.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.225 1.225 6 H -0.221 1.221 7 C -0.372 4.372 8 H 0.100 0.900 9 N -0.361 5.361 10 C 0.038 3.962 11 H 0.097 0.903 12 C -0.177 4.177 13 C 0.026 3.974 14 H 0.094 0.906 15 N -0.340 5.340 16 C 0.343 3.657 17 O -0.453 6.453 18 C -0.162 4.162 19 C -0.043 4.043 20 C -0.135 4.135 21 C -0.094 4.094 22 C 0.471 3.529 23 F -0.150 7.150 24 F -0.149 7.149 25 F -0.150 7.150 26 N -0.170 5.170 27 C -0.011 4.011 28 C -0.213 4.213 29 H 0.059 0.941 30 H 0.204 0.796 31 H 0.082 0.918 32 H 0.148 0.852 33 H 0.258 0.742 34 H 0.183 0.817 35 H 0.201 0.799 36 H 0.220 0.780 37 H 0.126 0.874 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.839 -28.510 -5.377 29.025 hybrid contribution -0.629 1.391 -0.475 1.599 sum 0.210 -27.119 -5.853 27.745 Atomic orbital electron populations 1.69830 1.06749 1.26004 1.59599 1.25616 0.96367 1.01321 1.03833 0.85061 0.78419 0.79758 0.76450 1.18625 1.22495 1.22103 1.19741 0.91690 0.85008 1.40743 0.89967 1.42407 1.05361 1.00918 1.87415 1.21292 0.95864 0.84548 0.94480 0.90305 1.23756 1.00184 0.99244 0.94508 1.22313 0.97975 0.80160 0.96935 0.90643 1.45793 1.41034 1.09384 1.37834 1.18342 0.79827 0.87624 0.79934 1.90838 1.45335 1.55504 1.53581 1.21200 1.00810 0.93940 1.00298 1.21978 0.93886 0.95831 0.92628 1.22063 0.98722 0.92548 1.00153 1.21311 0.97513 0.93548 0.97065 1.17801 0.74147 0.86326 0.74655 1.93233 1.72951 1.80934 1.67841 1.93252 1.35545 1.90405 1.95657 1.93254 1.89133 1.95454 1.37159 1.67260 1.18173 1.18165 1.13424 1.23396 0.95323 0.85686 0.96723 1.24224 0.97846 0.99559 0.99664 0.94091 0.79625 0.91836 0.85247 0.74228 0.81697 0.79946 0.77993 0.87385 0.94551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.76 13.06 21.65 0.28 -59.48 16 2 C -0.08 -4.53 5.50 84.87 0.47 -4.06 16 3 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.24 -13.02 9.97 84.04 0.84 -12.19 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 9 N -0.72 -35.38 5.31 -320.17 -1.70 -37.08 16 10 C 0.15 5.26 4.56 45.57 0.21 5.47 16 11 H 0.08 2.64 8.10 -2.38 -0.02 2.63 16 12 C -0.14 -3.60 7.58 31.12 0.24 -3.37 16 13 C 0.13 3.79 4.09 45.52 0.19 3.97 16 14 H 0.08 2.88 7.50 -2.39 -0.02 2.86 16 15 N -0.69 -14.06 5.32 -442.91 -2.35 -16.42 16 16 C 0.56 13.53 7.78 86.78 0.68 14.20 16 17 O -0.57 -19.83 16.04 -3.90 -0.06 -19.89 16 18 C -0.16 -2.73 5.89 -19.99 -0.12 -2.85 16 19 C -0.02 -0.26 9.72 22.73 0.22 -0.04 16 20 C -0.12 -1.41 9.59 22.33 0.21 -1.19 16 21 C 0.04 0.68 6.27 42.57 0.27 0.94 16 22 C 0.53 7.97 3.31 71.24 0.24 8.20 16 23 F -0.17 -3.02 16.85 44.97 0.76 -2.26 16 24 F -0.17 -2.42 17.15 44.97 0.77 -1.65 16 25 F -0.17 -2.52 17.28 44.97 0.78 -1.75 16 26 N -0.46 -7.68 9.71 -182.81 -1.78 -9.45 16 27 C 0.15 2.01 10.71 85.02 0.91 2.92 16 28 C -0.17 -5.33 7.69 31.18 0.24 -5.09 16 29 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 30 H 0.37 19.97 7.90 -92.71 -0.73 19.24 16 31 H 0.06 1.87 8.14 -2.38 -0.02 1.86 16 32 H 0.13 2.16 8.11 -2.39 -0.02 2.14 16 33 H 0.42 4.73 6.78 -92.71 -0.63 4.10 16 34 H 0.17 2.47 7.74 -2.91 -0.02 2.44 16 35 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 36 H 0.20 1.28 6.42 -2.91 -0.02 1.26 16 37 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -73.65 345.42 3.09 -70.56 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -0.21 Total: 22.64 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 4.58 Total: 6.93 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -5.55 Total: -122.43 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.06 Total: -19.89 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 2.31 Total: -5.65 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -73.65 3.09 -70.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020449607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.143 kcal (2) G-P(sol) polarization free energy of solvation -73.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds