Wall clock time and date at job start Tue Mar 31 2020 15:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46489 * 120.00335 * 2 1 4 4 C 1.50696 * 109.47320 * 270.00133 * 3 2 1 5 5 N 1.31800 * 119.12150 * 269.72648 * 4 3 2 6 6 C 1.32340 * 120.81397 * 179.75540 * 5 4 3 7 7 C 1.38597 * 119.10585 * 0.51049 * 6 5 4 8 8 C 1.38598 * 118.39908 * 359.75107 * 7 6 5 9 9 N 1.31797 * 119.12418 * 89.99859 * 4 3 2 10 10 C 1.34777 * 119.99598 * 180.02562 * 2 1 3 11 11 O 1.21544 * 119.99985 * 183.88746 * 10 2 1 12 12 C 1.47861 * 120.00219 * 3.88478 * 10 2 1 13 13 C 1.39684 * 120.10012 * 328.61139 * 12 10 2 14 14 C 1.38033 * 120.03762 * 179.97438 * 13 12 10 15 15 C 1.38181 * 120.24626 * 359.97438 * 14 13 12 16 16 C 1.39183 * 120.20208 * 0.05056 * 15 14 13 17 17 S 1.76204 * 120.02183 * 180.02562 * 16 15 14 18 18 C 1.76195 * 99.99537 * 267.23555 * 17 16 15 19 19 H 1.08000 * 120.00417 * 5.38040 * 18 17 16 20 20 C 1.38730 * 119.99877 * 185.38021 * 18 17 16 21 21 N 1.31624 * 119.99805 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00364 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47034 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47157 * 119.99552 * 22 20 18 25 25 H 1.48491 * 109.47438 * 240.00330 * 22 20 18 26 26 C 1.38872 * 119.95557 * 359.92523 * 16 15 14 27 27 H 1.09002 * 109.46761 * 274.36933 * 1 2 3 28 28 H 1.08998 * 109.46845 * 34.36420 * 1 2 3 29 29 H 1.08999 * 109.47278 * 154.36823 * 1 2 3 30 30 H 1.09010 * 109.47188 * 30.00280 * 3 2 1 31 31 H 1.09002 * 109.47307 * 150.00025 * 3 2 1 32 32 H 1.08007 * 120.44226 * 180.23533 * 6 5 4 33 33 H 1.08003 * 120.79743 * 179.76740 * 7 6 5 34 34 H 1.08002 * 120.44460 * 180.02562 * 8 7 6 35 35 H 1.07994 * 119.97875 * 359.97438 * 13 12 10 36 36 H 1.08000 * 119.87755 * 180.02562 * 14 13 12 37 37 H 1.08005 * 119.89910 * 180.02562 * 15 14 13 38 38 H 0.97007 * 119.99617 * 180.02562 * 21 20 18 39 39 H 1.08008 * 120.11930 * 180.32311 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 7 3.5553 1.3176 -2.0237 6 6 3.8075 1.6761 -3.2724 7 6 2.8948 2.4763 -3.9414 8 6 1.7454 2.8664 -3.2724 9 7 1.5586 2.4646 -2.0255 10 6 2.1388 -1.1672 -0.0005 11 8 3.3522 -1.1686 0.0708 12 6 1.4020 -2.4462 -0.0878 13 6 0.1237 -2.5573 0.4640 14 6 -0.5632 -3.7518 0.3813 15 6 0.0087 -4.8415 -0.2470 16 6 1.2821 -4.7422 -0.8000 17 16 2.0066 -6.1346 -1.6007 18 6 2.8942 -6.8365 -0.2501 19 1 2.7901 -6.4183 0.7402 20 6 3.7267 -7.9264 -0.4588 21 7 3.8532 -8.4364 -1.6656 22 14 4.6684 -8.6701 0.9728 23 1 4.3547 -7.9193 2.2151 24 1 4.2724 -10.0915 1.1408 25 1 6.1261 -8.5911 0.7010 26 6 1.9805 -3.5444 -0.7220 27 1 -0.3633 0.0783 1.0247 28 1 -0.3633 0.8483 -0.5801 29 1 -0.3634 -0.9265 -0.4445 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1382 0.5138 32 1 4.7145 1.3532 -3.7619 33 1 3.0749 2.7881 -4.9597 34 1 1.0118 3.4895 -3.7624 35 1 -0.3275 -1.7082 0.9557 36 1 -1.5517 -3.8347 0.8085 37 1 -0.5340 -5.7733 -0.3089 38 1 4.4351 -9.1987 -1.8114 39 1 2.9667 -3.4629 -1.1547 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413464607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:48 Heat of formation + Delta-G solvation = 65.542230 kcal Electronic energy + Delta-G solvation = -24318.292653 eV Core-core repulsion = 20739.368350 eV Total energy + Delta-G solvation = -3578.924303 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.094 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.31529 -40.11786 -37.84727 -35.82795 -33.92603 -32.96739 -32.48383 -30.93163 -30.60375 -28.16884 -26.68623 -25.54436 -24.76772 -23.73338 -22.45334 -22.18040 -19.78935 -18.05748 -17.68590 -17.40236 -16.87106 -16.56104 -16.06897 -15.89039 -15.15298 -14.93219 -14.82833 -14.61849 -14.24799 -13.83013 -13.65993 -13.42703 -13.22136 -13.15109 -12.93384 -12.61824 -12.26421 -11.96403 -11.27911 -11.20937 -11.15065 -11.08126 -11.05202 -11.00435 -10.65775 -10.03687 -9.89247 -9.63968 -9.44059 -9.14656 -8.94153 -8.88734 -8.55625 -7.98146 -6.69710 -6.26644 -4.00476 0.56559 0.85823 1.25452 1.67682 2.76422 3.01478 3.21452 3.24653 3.31126 3.48903 3.64115 3.71211 3.89770 4.06239 4.26255 4.33598 4.59517 4.71622 4.82795 4.91877 5.00872 5.09046 5.10035 5.21703 5.28082 5.31597 5.44570 5.49714 5.58122 5.60481 5.75275 5.89199 6.00309 6.10380 6.26940 6.32464 6.59654 6.66177 6.74691 6.94426 7.20296 7.30540 7.60632 7.87136 8.24816 8.35843 9.19665 10.80154 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.003017 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.020540 B = 9278.124293 C = 9935.366339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.611 5.611 3 C 0.186 3.814 4 C 0.299 3.701 5 N -0.491 5.491 6 C 0.148 3.852 7 C -0.229 4.229 8 C 0.143 3.857 9 N -0.512 5.512 10 C 0.563 3.437 11 O -0.511 6.511 12 C -0.150 4.150 13 C -0.106 4.106 14 C -0.142 4.142 15 C -0.057 4.057 16 C -0.105 4.105 17 S -0.038 6.038 18 C -0.517 4.517 19 H 0.077 0.923 20 C 0.073 3.927 21 N -0.871 5.871 22 Si 0.921 3.079 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.278 1.278 26 C -0.022 4.022 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.169 0.831 33 H 0.148 0.852 34 H 0.168 0.832 35 H 0.136 0.864 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.269 0.731 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.643 22.621 -0.999 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.346 5.346 3 C 0.061 3.939 4 C 0.030 3.970 5 N -0.204 5.204 6 C -0.018 4.018 7 C -0.251 4.251 8 C -0.023 4.023 9 N -0.227 5.227 10 C 0.352 3.648 11 O -0.386 6.386 12 C -0.155 4.155 13 C -0.124 4.124 14 C -0.162 4.162 15 C -0.078 4.078 16 C -0.216 4.216 17 S 0.196 5.804 18 C -0.665 4.665 19 H 0.095 0.905 20 C -0.136 4.136 21 N -0.507 5.507 22 Si 0.747 3.253 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.043 4.043 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.186 0.814 33 H 0.165 0.835 34 H 0.185 0.815 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.078 0.922 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.100 21.774 -1.229 23.264 hybrid contribution 0.768 0.337 0.945 1.263 sum -7.332 22.110 -0.284 23.296 Atomic orbital electron populations 1.22525 0.79239 1.04624 1.01782 1.47618 1.07102 1.04769 1.75128 1.20035 0.99921 0.85768 0.88191 1.23721 0.85752 0.89558 0.97978 1.68412 1.20704 1.20851 1.10450 1.23383 0.98332 0.90245 0.89813 1.22965 0.97291 1.01728 1.03121 1.23222 0.95161 0.94070 0.89853 1.68248 1.31376 1.12314 1.10717 1.18585 0.87168 0.83375 0.75663 1.90814 1.13343 1.86859 1.47566 1.19790 0.95924 0.93951 1.05870 1.21763 0.93367 0.98316 0.98998 1.21091 1.00329 0.93112 1.01682 1.21959 0.94508 0.98198 0.93183 1.22815 0.96887 1.00004 1.01894 1.83569 1.59950 1.20172 1.16661 1.22883 1.31043 1.17838 0.94700 0.90527 1.25005 0.95773 0.96017 0.96807 1.70002 1.36951 1.23258 1.20444 0.86064 0.79294 0.78693 0.81256 1.19439 1.20509 1.20418 1.21864 0.98743 0.90206 0.93530 0.91945 0.91001 0.88725 0.87839 0.87016 0.81352 0.83455 0.81500 0.84643 0.85830 0.85143 0.92151 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 8.79 59.85 0.53 1.10 16 2 N -0.61 -7.94 2.86 -184.08 -0.53 -8.47 16 3 C 0.19 2.18 5.89 -5.20 -0.03 2.15 16 4 C 0.30 3.80 7.22 -157.19 -1.14 2.66 16 5 N -0.49 -6.82 10.34 -10.72 -0.11 -6.93 16 6 C 0.15 1.54 11.30 -17.20 -0.19 1.35 16 7 C -0.23 -1.78 10.17 -39.32 -0.40 -2.18 16 8 C 0.14 1.20 11.30 -17.20 -0.19 1.00 16 9 N -0.51 -5.62 10.33 -10.72 -0.11 -5.74 16 10 C 0.56 9.66 7.45 -12.32 -0.09 9.57 16 11 O -0.51 -10.60 16.30 5.33 0.09 -10.51 16 12 C -0.15 -2.65 5.47 -104.99 -0.57 -3.22 16 13 C -0.11 -1.50 7.44 -39.12 -0.29 -1.79 16 14 C -0.14 -2.07 10.02 -39.68 -0.40 -2.47 16 15 C -0.06 -1.05 9.79 -39.25 -0.38 -1.43 16 16 C -0.11 -2.30 5.45 -39.00 -0.21 -2.51 16 17 S -0.04 -0.99 21.41 -107.50 -2.30 -3.29 16 18 C -0.52 -14.87 9.46 30.91 0.29 -14.57 16 19 H 0.08 2.20 7.79 -52.49 -0.41 1.79 16 20 C 0.07 2.07 5.49 -17.46 -0.10 1.98 16 21 N -0.87 -25.75 13.22 55.49 0.73 -25.01 16 22 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C -0.02 -0.46 9.35 -38.92 -0.36 -0.82 16 27 H 0.06 0.45 7.41 -51.93 -0.39 0.06 16 28 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 29 H 0.09 0.97 4.74 -51.93 -0.25 0.72 16 30 H 0.10 0.89 8.07 -51.92 -0.42 0.47 16 31 H 0.11 1.45 7.37 -51.93 -0.38 1.06 16 32 H 0.17 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 34 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.14 1.42 4.75 -52.49 -0.25 1.18 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.13 2.26 8.06 -52.48 -0.42 1.84 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.13 3.04 7.95 -52.48 -0.42 2.62 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -36.01 354.73 -9.63 -45.65 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.18 Total: 1.33 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -3.55 Total: -9.19 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.01 Total: -46.15 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -0.99 SS G_CDS: -2.30 Total: -3.29 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.01 -9.63 -45.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413464607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.189 kcal (2) G-P(sol) polarization free energy of solvation -36.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds