Wall clock time and date at job start Tue Mar 31 2020 16:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46931 * 2 1 4 4 C 1.46506 * 120.00081 * 85.00314 * 3 2 1 5 5 C 1.50699 * 109.46928 * 274.99878 * 4 3 2 6 6 H 1.08003 * 119.99963 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99865 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00518 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99987 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47000 * 60.00482 * 9 7 5 11 11 H 1.48506 * 109.47330 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47185 * 300.00291 * 9 7 5 13 13 S 1.65599 * 120.00006 * 265.00079 * 3 2 1 14 14 O 1.42092 * 106.40565 * 23.53997 * 13 3 2 15 15 O 1.42106 * 106.40075 * 156.46217 * 13 3 2 16 16 C 1.76206 * 107.21692 * 269.99928 * 13 3 2 17 17 C 1.38194 * 119.96943 * 114.72876 * 16 13 3 18 18 C 1.38161 * 120.10662 * 179.72413 * 17 16 13 19 19 C 1.38789 * 120.05462 * 0.54868 * 18 17 16 20 20 O 1.35901 * 120.02718 * 179.70280 * 19 18 17 21 21 C 1.42897 * 116.99726 * 0.02562 * 20 19 18 22 22 C 1.38619 * 119.94669 * 359.72283 * 19 18 17 23 23 C 1.38655 * 119.88838 * 0.02562 * 22 19 18 24 24 O 1.35899 * 120.02767 * 180.02562 * 23 22 19 25 25 C 1.42901 * 116.99688 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47270 * 299.99780 * 1 2 3 27 27 H 1.08997 * 109.47170 * 59.99990 * 1 2 3 28 28 H 1.09002 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47270 * 240.00220 * 2 1 3 30 30 H 1.08997 * 109.47170 * 120.00010 * 2 1 3 31 31 H 1.09004 * 109.47073 * 34.99706 * 4 3 2 32 32 H 1.09000 * 109.47212 * 154.99789 * 4 3 2 33 33 H 0.96992 * 120.00316 * 179.97438 * 8 7 5 34 34 H 1.08005 * 119.94677 * 0.02562 * 17 16 13 35 35 H 1.08003 * 119.97092 * 180.25537 * 18 17 16 36 36 H 1.08989 * 109.47267 * 299.99555 * 21 20 19 37 37 H 1.08999 * 109.47132 * 60.00083 * 21 20 19 38 38 H 1.09001 * 109.46524 * 179.97438 * 21 20 19 39 39 H 1.07992 * 120.05702 * 180.02562 * 22 19 18 40 40 H 1.08996 * 109.47085 * 59.99780 * 25 24 23 41 41 H 1.09000 * 109.46806 * 180.02562 * 25 24 23 42 42 H 1.08997 * 109.47001 * 299.99388 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 0.8360 2.7288 1.6357 6 1 -0.0228 2.5941 0.9948 7 6 0.7224 3.4672 2.7944 8 7 1.7680 3.6308 3.5752 9 14 -0.9164 4.2365 3.2549 10 1 -1.9384 3.1699 3.4075 11 1 -0.7746 4.9738 4.5361 12 1 -1.3389 5.1777 2.1868 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4416 -2.4448 15 8 2.3056 3.5187 -1.1997 16 6 4.1169 1.7941 -1.7319 17 6 4.4902 1.0254 -2.8180 18 6 5.8265 0.7727 -3.0617 19 6 6.7967 1.2811 -2.2094 20 8 8.1106 1.0271 -2.4463 21 6 8.4212 0.2302 -3.5910 22 6 6.4245 2.0478 -1.1162 23 6 5.0831 2.3043 -0.8767 24 8 4.7151 3.0560 0.1939 25 6 5.7629 3.5494 1.0311 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4690 1.4182 2.0481 32 1 2.9080 2.8919 1.1513 33 1 1.6881 4.1506 4.3902 34 1 3.7364 0.6256 -3.4801 35 1 6.1159 0.1751 -3.9135 36 1 7.9472 -0.7464 -3.4932 37 1 8.0520 0.7250 -4.4893 38 1 9.5015 0.1044 -3.6638 39 1 7.1781 2.4446 -0.4521 40 1 6.4294 4.1816 0.4445 41 1 5.3330 4.1316 1.8461 42 1 6.3253 2.7107 1.4416 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032180607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:56 Heat of formation + Delta-G solvation = -113.315182 kcal Electronic energy + Delta-G solvation = -27641.207120 eV Core-core repulsion = 23714.925307 eV Total energy + Delta-G solvation = -3926.281813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.56216 -39.09014 -36.71870 -36.26684 -35.86694 -34.95442 -32.48417 -31.01725 -30.09469 -29.67602 -27.58465 -27.10748 -26.61971 -22.92083 -22.65999 -22.15698 -21.67716 -19.03919 -18.27858 -17.14910 -16.98489 -16.56754 -16.30424 -16.13553 -16.06826 -15.47118 -15.13135 -14.91032 -14.34779 -14.33166 -13.63118 -13.37241 -13.13625 -12.97299 -12.77771 -12.70051 -12.57775 -12.10622 -11.74252 -11.69028 -11.50400 -11.34303 -11.23711 -11.22751 -11.02301 -10.90010 -10.88337 -10.77847 -10.37898 -10.28862 -10.20566 -9.79439 -9.47656 -8.78236 -8.40606 -8.29086 -7.91280 -5.95949 -3.96727 0.92998 1.27789 1.34085 2.88385 3.35629 3.40132 3.41713 3.42772 3.48448 3.91433 4.47939 4.52876 4.59011 4.78308 4.84158 4.84902 5.03364 5.14661 5.20357 5.36372 5.39057 5.42621 5.50285 5.53864 5.56079 5.76917 5.90027 5.95258 6.03318 6.11719 6.14542 6.28602 6.44968 6.52265 6.83674 7.04531 7.09075 7.32824 7.43024 7.64203 7.82497 8.02896 8.35632 9.04494 9.66025 11.12802 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.004512 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.548345 B = 6204.759647 C = 7136.499940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.134 3.866 3 N -0.980 5.980 4 C 0.251 3.749 5 C -0.520 4.520 6 H 0.061 0.939 7 C 0.062 3.938 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.275 1.275 13 S 2.694 3.306 14 O -0.983 6.983 15 O -0.936 6.936 16 C -0.745 4.745 17 C 0.049 3.951 18 C -0.271 4.271 19 C 0.207 3.793 20 O -0.314 6.314 21 C 0.025 3.975 22 C -0.266 4.266 23 C 0.265 3.735 24 O -0.281 6.281 25 C 0.025 3.975 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.261 0.739 34 H 0.149 0.851 35 H 0.134 0.866 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.143 0.857 40 H 0.056 0.944 41 H 0.116 0.884 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.807 -7.792 -10.418 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.007 3.993 3 N -0.820 5.820 4 C 0.130 3.870 5 C -0.559 4.559 6 H 0.079 0.921 7 C -0.139 4.139 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 S 2.781 3.219 14 O -0.973 6.973 15 O -0.926 6.926 16 C -0.829 4.829 17 C 0.030 3.970 18 C -0.290 4.290 19 C 0.161 3.839 20 O -0.226 6.226 21 C -0.070 4.070 22 C -0.286 4.286 23 C 0.215 3.785 24 O -0.192 6.192 25 C -0.069 4.069 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.167 0.833 35 H 0.152 0.848 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.161 0.839 40 H 0.075 0.925 41 H 0.134 0.866 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.359 -7.097 -10.567 17.742 hybrid contribution 0.154 -0.007 0.342 0.375 sum 12.514 -7.103 -10.225 17.652 Atomic orbital electron populations 1.22263 0.96324 1.00770 1.03731 1.20976 0.94808 0.82390 1.01100 1.57456 1.77742 1.22956 1.23875 1.19291 0.97850 0.91451 0.78419 1.21543 0.96394 1.31491 1.06517 0.92061 1.24873 0.96623 0.96118 0.96304 1.69901 1.29188 1.41010 1.13674 0.86665 0.84203 0.79581 0.77621 1.20309 1.21363 1.20077 1.01977 0.73155 0.74060 0.72665 1.93472 1.69735 1.76270 1.57842 1.93601 1.85250 1.29107 1.84629 1.30610 1.26854 1.18448 1.06992 1.20579 0.96046 0.88515 0.91896 1.21169 0.93389 1.10506 1.03969 1.18868 0.82534 0.90421 0.92123 1.86076 1.22095 1.67811 1.46660 1.23130 1.02451 0.94509 0.86903 1.20417 0.95446 1.10303 1.02478 1.18126 0.90974 0.84738 0.84622 1.86460 1.35531 1.62460 1.34730 1.23239 0.90479 0.99088 0.94091 0.90269 0.92736 0.93150 0.92135 0.91167 0.95229 0.92037 0.92943 0.83335 0.84776 0.92206 0.92242 0.88064 0.83933 0.92507 0.86581 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.83 37.16 0.37 -2.75 16 2 C 0.13 2.43 6.09 -4.04 -0.02 2.40 16 3 N -0.98 -21.16 2.80 -115.66 -0.32 -21.49 16 4 C 0.25 6.31 4.92 -5.19 -0.03 6.29 16 5 C -0.52 -14.47 8.41 -34.44 -0.29 -14.76 16 6 H 0.06 1.70 6.89 -52.48 -0.36 1.34 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 S 2.69 57.49 5.19 -107.50 -0.56 56.93 16 14 O -0.98 -20.80 15.93 -57.17 -0.91 -21.71 16 15 O -0.94 -23.58 16.26 -62.53 -1.02 -24.59 16 16 C -0.74 -13.41 5.92 -39.41 -0.23 -13.65 16 17 C 0.05 0.73 9.54 -39.63 -0.38 0.35 16 18 C -0.27 -3.43 9.04 -39.41 -0.36 -3.79 16 19 C 0.21 2.79 6.68 -39.24 -0.26 2.53 16 20 O -0.31 -3.60 10.49 -19.43 -0.20 -3.80 16 21 C 0.02 0.17 9.81 101.05 0.99 1.17 16 22 C -0.27 -3.94 8.97 -39.29 -0.35 -4.29 16 23 C 0.27 4.65 6.63 -39.24 -0.26 4.39 16 24 O -0.28 -5.33 6.46 -29.29 -0.19 -5.52 16 25 C 0.03 0.36 9.81 101.05 0.99 1.35 16 26 H 0.08 1.60 6.59 -51.93 -0.34 1.25 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.95 7.61 -51.93 -0.40 0.56 16 30 H 0.07 1.18 8.00 -51.93 -0.42 0.76 16 31 H 0.03 0.76 8.00 -51.93 -0.42 0.34 16 32 H 0.06 1.62 4.84 -51.93 -0.25 1.37 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.15 1.96 7.33 -52.48 -0.38 1.58 16 35 H 0.13 1.24 6.29 -52.48 -0.33 0.91 16 36 H 0.06 0.36 7.66 -51.94 -0.40 -0.03 16 37 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.14 1.80 6.30 -52.49 -0.33 1.47 16 40 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 41 H 0.12 1.69 8.14 -51.93 -0.42 1.26 16 42 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -34.40 355.77 -7.70 -42.10 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.64 Total: -0.05 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 0.07 Total: -19.10 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.41 Total: -46.43 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -2.32 Total: -55.63 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 57.49 SS G_CDS: -0.56 Total: 56.93 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.40 -7.70 -42.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032180607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.218 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds