Wall clock time and date at job start Tue Mar 31 2020 16:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46931 * 2 1 4 4 C 1.46506 * 120.00081 * 85.00314 * 3 2 1 5 5 C 1.50699 * 109.46928 * 274.99878 * 4 3 2 6 6 H 1.08003 * 119.99963 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99865 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00518 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99987 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47000 * 60.00482 * 9 7 5 11 11 H 1.48506 * 109.47330 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47185 * 300.00291 * 9 7 5 13 13 S 1.65599 * 120.00006 * 265.00079 * 3 2 1 14 14 O 1.42092 * 106.40565 * 23.53997 * 13 3 2 15 15 O 1.42106 * 106.40075 * 156.46217 * 13 3 2 16 16 C 1.76206 * 107.21692 * 269.99928 * 13 3 2 17 17 C 1.38194 * 119.96943 * 114.72876 * 16 13 3 18 18 C 1.38161 * 120.10662 * 179.72413 * 17 16 13 19 19 C 1.38789 * 120.05462 * 0.54868 * 18 17 16 20 20 O 1.35901 * 120.02718 * 179.70280 * 19 18 17 21 21 C 1.42897 * 116.99726 * 0.02562 * 20 19 18 22 22 C 1.38619 * 119.94669 * 359.72283 * 19 18 17 23 23 C 1.38655 * 119.88838 * 0.02562 * 22 19 18 24 24 O 1.35899 * 120.02767 * 180.02562 * 23 22 19 25 25 C 1.42901 * 116.99688 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47270 * 299.99780 * 1 2 3 27 27 H 1.08997 * 109.47170 * 59.99990 * 1 2 3 28 28 H 1.09002 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47270 * 240.00220 * 2 1 3 30 30 H 1.08997 * 109.47170 * 120.00010 * 2 1 3 31 31 H 1.09004 * 109.47073 * 34.99706 * 4 3 2 32 32 H 1.09000 * 109.47212 * 154.99789 * 4 3 2 33 33 H 0.96992 * 120.00316 * 179.97438 * 8 7 5 34 34 H 1.08005 * 119.94677 * 0.02562 * 17 16 13 35 35 H 1.08003 * 119.97092 * 180.25537 * 18 17 16 36 36 H 1.08989 * 109.47267 * 299.99555 * 21 20 19 37 37 H 1.08999 * 109.47132 * 60.00083 * 21 20 19 38 38 H 1.09001 * 109.46524 * 179.97438 * 21 20 19 39 39 H 1.07992 * 120.05702 * 180.02562 * 22 19 18 40 40 H 1.08996 * 109.47085 * 59.99780 * 25 24 23 41 41 H 1.09000 * 109.46806 * 180.02562 * 25 24 23 42 42 H 1.08997 * 109.47001 * 299.99388 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 0.8360 2.7288 1.6357 6 1 -0.0228 2.5941 0.9948 7 6 0.7224 3.4672 2.7944 8 7 1.7680 3.6308 3.5752 9 14 -0.9164 4.2365 3.2549 10 1 -1.9384 3.1699 3.4075 11 1 -0.7746 4.9738 4.5361 12 1 -1.3389 5.1777 2.1868 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4416 -2.4448 15 8 2.3056 3.5187 -1.1997 16 6 4.1169 1.7941 -1.7319 17 6 4.4902 1.0254 -2.8180 18 6 5.8265 0.7727 -3.0617 19 6 6.7967 1.2811 -2.2094 20 8 8.1106 1.0271 -2.4463 21 6 8.4212 0.2302 -3.5910 22 6 6.4245 2.0478 -1.1162 23 6 5.0831 2.3043 -0.8767 24 8 4.7151 3.0560 0.1939 25 6 5.7629 3.5494 1.0311 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4690 1.4182 2.0481 32 1 2.9080 2.8919 1.1513 33 1 1.6881 4.1506 4.3902 34 1 3.7364 0.6256 -3.4801 35 1 6.1159 0.1751 -3.9135 36 1 7.9472 -0.7464 -3.4932 37 1 8.0520 0.7250 -4.4893 38 1 9.5015 0.1044 -3.6638 39 1 7.1781 2.4446 -0.4521 40 1 6.4294 4.1816 0.4445 41 1 5.3330 4.1316 1.8461 42 1 6.3253 2.7107 1.4416 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032180607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:55 Heat of formation + Delta-G solvation = -137.921459 kcal Electronic energy + Delta-G solvation = -27642.274129 eV Core-core repulsion = 23714.925307 eV Total energy + Delta-G solvation = -3927.348822 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64271 -40.15459 -38.19536 -37.69103 -37.47113 -36.70169 -34.55540 -32.08546 -31.37302 -31.19378 -28.58495 -28.27071 -28.22188 -24.58444 -24.07012 -23.36477 -23.16525 -20.25181 -19.65301 -18.70489 -18.56679 -17.99413 -17.89896 -17.36465 -17.01004 -16.86413 -16.53310 -16.22972 -15.93597 -15.51584 -15.27705 -14.71403 -14.61072 -14.34368 -14.17147 -13.90282 -13.79320 -13.45141 -13.28593 -13.07456 -13.02219 -12.86655 -12.78019 -12.74752 -12.65652 -12.51891 -12.17142 -12.14750 -12.06472 -11.81809 -11.75239 -11.55738 -11.37589 -10.45877 -9.86626 -9.73129 -9.47902 -8.09311 -6.16871 -0.42784 -0.14039 0.21811 1.41492 1.45162 1.51573 1.97955 2.11473 2.28570 2.44816 2.49858 2.93141 3.22033 3.42350 3.67589 3.94165 4.02249 4.08023 4.13459 4.34904 4.35493 4.38901 4.40430 4.43940 4.52671 4.59535 4.70785 4.74106 4.75733 4.80036 4.97728 5.03515 5.07065 5.28967 5.35584 5.42678 5.54851 5.67372 5.88751 6.06170 6.10002 6.24467 6.26598 6.89479 7.48304 8.98112 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.004512 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.548345 B = 6204.759647 C = 7136.499940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.988 5.988 4 C 0.266 3.734 5 C -0.537 4.537 6 H 0.052 0.948 7 C 0.015 3.985 8 N -0.921 5.921 9 Si 0.946 3.054 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.281 1.281 13 S 2.698 3.302 14 O -0.990 6.990 15 O -0.988 6.988 16 C -0.761 4.761 17 C 0.043 3.957 18 C -0.256 4.256 19 C 0.216 3.784 20 O -0.320 6.320 21 C 0.010 3.990 22 C -0.272 4.272 23 C 0.246 3.754 24 O -0.320 6.320 25 C 0.018 3.982 26 H 0.051 0.949 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.018 0.982 32 H 0.048 0.952 33 H 0.264 0.736 34 H 0.164 0.836 35 H 0.176 0.824 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.126 0.874 39 H 0.160 0.840 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.522 -9.614 -11.933 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.003 4.003 3 N -0.826 5.826 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.070 0.930 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.772 3.228 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.207 1.207 13 S 2.792 3.208 14 O -0.980 6.980 15 O -0.979 6.979 16 C -0.851 4.851 17 C 0.024 3.976 18 C -0.275 4.275 19 C 0.168 3.832 20 O -0.232 6.232 21 C -0.084 4.084 22 C -0.292 4.292 23 C 0.197 3.803 24 O -0.231 6.231 25 C -0.075 4.075 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.182 0.818 35 H 0.193 0.807 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.144 0.856 39 H 0.178 0.822 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 14.026 -8.936 -12.080 20.555 hybrid contribution -0.161 0.457 0.677 0.832 sum 13.865 -8.480 -11.403 19.854 Atomic orbital electron populations 1.22231 0.96412 1.02586 1.01631 1.21291 0.94866 0.81031 1.03087 1.57332 1.78760 1.24001 1.22550 1.18862 0.96236 0.91016 0.79550 1.21857 0.97291 1.31918 1.06638 0.92980 1.25606 0.99795 0.96636 0.96400 1.69990 1.30666 1.41511 1.13975 0.85799 0.80766 0.78900 0.77359 1.19083 1.20271 1.20666 1.01326 0.74348 0.72906 0.72263 1.93442 1.71036 1.75906 1.57626 1.93529 1.86798 1.32310 1.85258 1.30040 1.24062 1.21595 1.09411 1.20844 0.97731 0.87987 0.91034 1.21548 0.91966 1.09503 1.04518 1.18981 0.83783 0.89119 0.91317 1.86094 1.20536 1.68146 1.48433 1.23562 1.04397 0.94627 0.85768 1.20576 0.94519 1.10581 1.03497 1.18296 0.92123 0.85337 0.84547 1.86383 1.37782 1.63207 1.35770 1.23421 0.90129 1.00141 0.93817 0.92992 0.94089 0.89383 0.89296 0.89931 0.96408 0.93396 0.92723 0.81844 0.80683 0.90789 0.90896 0.85620 0.82221 0.90138 0.87927 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.12 9.83 71.98 0.71 -5.41 16 2 C 0.12 4.42 6.09 86.38 0.53 4.94 16 3 N -0.99 -43.82 2.80 -519.84 -1.45 -45.28 16 4 C 0.27 13.96 4.92 85.63 0.42 14.38 16 5 C -0.54 -31.03 8.41 25.60 0.22 -30.81 16 6 H 0.05 3.02 6.89 -2.91 -0.02 3.00 16 7 C 0.01 0.84 5.46 84.65 0.46 1.30 16 8 N -0.92 -54.00 13.29 21.45 0.28 -53.72 16 9 Si 0.95 45.55 29.54 68.60 2.03 47.58 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 13 S 2.70 118.34 5.19 -56.49 -0.29 118.05 16 14 O -0.99 -42.17 15.93 -128.00 -2.04 -44.21 16 15 O -0.99 -52.49 16.26 -122.88 -2.00 -54.49 16 16 C -0.76 -27.28 5.92 22.38 0.13 -27.15 16 17 C 0.04 1.20 9.54 22.24 0.21 1.41 16 18 C -0.26 -5.54 9.04 22.38 0.20 -5.33 16 19 C 0.22 5.12 6.68 22.49 0.15 5.27 16 20 O -0.32 -6.07 10.49 -92.43 -0.97 -7.04 16 21 C 0.01 0.09 9.81 113.37 1.11 1.21 16 22 C -0.27 -7.58 8.97 22.46 0.20 -7.38 16 23 C 0.25 8.65 6.63 22.49 0.15 8.80 16 24 O -0.32 -12.57 6.46 -82.97 -0.54 -13.11 16 25 C 0.02 0.54 9.81 113.37 1.11 1.65 16 26 H 0.05 2.14 6.59 -2.39 -0.02 2.12 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.09 2.68 7.61 -2.39 -0.02 2.66 16 30 H 0.08 2.74 8.00 -2.39 -0.02 2.72 16 31 H 0.02 0.96 8.00 -2.38 -0.02 0.94 16 32 H 0.05 2.67 4.84 -2.39 -0.01 2.66 16 33 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 34 H 0.16 3.93 7.33 -2.91 -0.02 3.91 16 35 H 0.18 2.27 6.29 -2.91 -0.02 2.25 16 36 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 37 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 38 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.16 3.73 6.30 -2.91 -0.02 3.71 16 40 H 0.08 1.88 7.66 -2.39 -0.02 1.86 16 41 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.08 1.91 7.66 -2.39 -0.02 1.89 16 Total: -1.00 -77.31 355.77 1.66 -75.65 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 1.04 Total: 13.69 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 5.60 Total: -37.12 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -1.17 Total: -98.99 kcal Atomic # 8 Polarization: -113.31 SS G_CDS: -5.54 Total: -118.85 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: 118.34 SS G_CDS: -0.29 Total: 118.05 kcal Total: -77.31 1.66 -75.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032180607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.270 kcal (2) G-P(sol) polarization free energy of solvation -77.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds