Wall clock time and date at job start Tue Mar 31 2020 16:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35977 * 117.00010 * 2 1 4 4 C 1.38718 * 120.00390 * 0.02562 * 3 2 1 5 5 C 1.38103 * 120.00017 * 179.70031 * 4 3 2 6 6 C 1.38721 * 120.00150 * 0.55842 * 5 4 3 7 7 O 1.35979 * 119.99980 * 179.72202 * 6 5 4 8 8 C 1.42905 * 117.00260 * 359.72039 * 7 6 5 9 9 C 1.38678 * 119.99693 * 359.43762 * 6 5 4 10 10 C 1.50695 * 119.99621 * 180.29918 * 9 6 5 11 11 N 1.46504 * 109.47237 * 80.00732 * 10 9 6 12 12 S 1.65597 * 120.00343 * 164.99924 * 11 10 9 13 13 O 1.42095 * 104.27784 * 181.07451 * 12 11 10 14 14 O 1.42101 * 104.27361 * 308.92829 * 12 11 10 15 15 C 1.81395 * 104.45005 * 64.99856 * 12 11 10 16 16 C 1.52998 * 109.47184 * 180.02562 * 15 12 11 17 17 C 1.50702 * 109.47466 * 180.02562 * 16 15 12 18 18 H 1.08001 * 119.99445 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00028 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00381 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99879 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47178 * 90.00225 * 21 19 17 23 23 H 1.48497 * 109.47495 * 210.00284 * 21 19 17 24 24 H 1.48498 * 109.47208 * 330.00532 * 21 19 17 25 25 C 1.38151 * 120.00087 * 0.28664 * 9 6 5 26 26 H 1.08994 * 109.46754 * 299.99865 * 1 2 3 27 27 H 1.08995 * 109.47100 * 59.99951 * 1 2 3 28 28 H 1.09005 * 109.47298 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99532 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.99905 * 180.29467 * 5 4 3 31 31 H 1.09001 * 109.47103 * 300.00642 * 8 7 6 32 32 H 1.09004 * 109.47054 * 60.00146 * 8 7 6 33 33 H 1.09000 * 109.47187 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.47508 * 200.00406 * 10 9 6 35 35 H 1.09006 * 109.47652 * 320.00870 * 10 9 6 36 36 H 0.97001 * 119.99866 * 344.99804 * 11 10 9 37 37 H 1.09000 * 109.47131 * 300.00139 * 15 12 11 38 38 H 1.09000 * 109.47083 * 59.99921 * 15 12 11 39 39 H 1.09000 * 109.46946 * 299.99942 * 16 15 12 40 40 H 1.09000 * 109.47428 * 59.99822 * 16 15 12 41 41 H 0.96991 * 120.00315 * 180.02562 * 20 19 17 42 42 H 1.07995 * 119.99981 * 179.97438 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9180 3.6055 0.0068 6 6 3.3033 3.6781 0.0008 7 8 3.9206 4.8896 0.0013 8 6 3.0807 6.0458 0.0018 9 6 4.0585 2.5150 0.0004 10 6 5.5634 2.5939 0.0007 11 7 6.0383 2.8581 1.3612 12 16 7.6343 2.6309 1.7400 13 8 7.7161 2.9541 3.1212 14 8 7.9210 1.3186 1.2764 15 6 8.5158 3.8645 0.7441 16 6 10.0187 3.7537 1.0084 17 6 10.7511 4.7790 0.1816 18 1 10.1997 5.4428 -0.4678 19 6 12.1250 4.8694 0.2542 20 7 12.7964 4.0607 1.0445 21 14 13.0328 6.1398 -0.7713 22 1 13.1573 7.4021 0.0010 23 1 14.3863 5.6294 -1.1071 24 1 12.2765 6.3979 -2.0229 25 6 3.4313 1.2841 -0.0001 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 0.2124 2.3185 0.0014 30 1 1.3298 4.5112 0.0120 31 1 2.4513 6.0381 -0.8880 32 1 2.4515 6.0374 0.8919 33 1 3.6986 6.9438 0.0017 34 1 5.9769 1.6487 -0.3512 35 1 5.8853 3.3995 -0.6593 36 1 5.4178 3.1661 2.0402 37 1 8.3190 3.6860 -0.3130 38 1 8.1716 4.8628 1.0143 39 1 10.2158 3.9320 2.0655 40 1 10.3627 2.7554 0.7380 41 1 13.7629 4.1246 1.0959 42 1 4.0194 0.3783 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264179708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:11 Heat of formation + Delta-G solvation = -127.227433 kcal Electronic energy + Delta-G solvation = -25751.677039 eV Core-core repulsion = 21824.791946 eV Total energy + Delta-G solvation = -3926.885094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.81264 -39.23650 -37.00131 -36.47012 -35.37382 -34.98062 -33.83326 -31.39115 -31.09938 -30.02241 -27.82037 -27.16593 -25.63921 -25.53560 -22.51206 -21.64769 -21.49323 -18.86181 -18.45836 -17.85953 -17.33320 -17.09517 -16.44171 -16.21721 -15.90210 -15.73108 -15.34217 -15.04920 -14.75764 -14.53114 -14.45790 -14.22824 -13.41036 -13.28313 -13.10539 -12.97195 -12.82850 -12.47332 -12.34179 -11.93772 -11.86318 -11.68494 -11.55131 -11.49568 -11.41511 -11.04486 -10.90852 -10.89924 -10.70390 -10.37035 -10.32046 -9.74298 -9.41438 -9.26505 -8.93788 -8.46156 -7.99480 -6.08217 -4.13351 0.73959 1.03435 1.19071 2.94816 3.10727 3.18808 3.28848 3.34933 3.37835 3.53454 4.30195 4.35319 4.40471 4.43380 4.68593 4.77110 4.78511 4.79494 4.86702 4.90463 4.93132 5.11191 5.16180 5.26093 5.26959 5.34081 5.46964 5.54771 5.73687 5.76619 5.88074 5.95060 5.99898 6.08945 6.32962 6.57106 6.99122 7.20197 7.20712 7.36318 7.42755 7.85174 8.22822 8.90190 9.51038 11.02914 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.002767 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.433483 B =10115.337488 C =10925.157250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.088 3.912 4 C -0.165 4.165 5 C -0.173 4.173 6 C 0.108 3.892 7 O -0.306 6.306 8 C 0.027 3.973 9 C -0.086 4.086 10 C 0.166 3.834 11 N -1.120 6.120 12 S 2.594 3.406 13 O -0.968 6.968 14 O -0.967 6.967 15 C -0.589 4.589 16 C 0.027 3.973 17 C -0.518 4.518 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.891 5.891 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.093 4.093 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.099 0.901 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.413 0.587 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.265 0.735 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.023 -1.211 -3.896 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.043 3.957 4 C -0.184 4.184 5 C -0.191 4.191 6 C 0.062 3.938 7 O -0.219 6.219 8 C -0.069 4.069 9 C -0.088 4.088 10 C 0.040 3.960 11 N -0.877 5.877 12 S 2.691 3.309 13 O -0.959 6.959 14 O -0.957 6.957 15 C -0.722 4.722 16 C -0.012 4.012 17 C -0.558 4.558 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.113 4.113 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.246 0.754 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -27.112 -2.147 -3.363 27.404 hybrid contribution -0.461 1.676 -0.707 1.877 sum -27.572 -0.470 -4.070 27.875 Atomic orbital electron populations 1.23029 0.78623 1.03923 1.01108 1.86102 1.21102 1.26559 1.89269 1.18847 0.92145 0.84279 1.00382 1.21027 0.99944 0.91682 1.05714 1.20995 0.93136 0.98425 1.06575 1.18760 0.90644 0.85531 0.98829 1.86173 1.35165 1.11927 1.88668 1.23078 0.95994 0.86787 1.00997 1.18975 0.95354 0.89902 1.04582 1.19992 0.89565 1.02528 0.83897 1.55775 1.28394 1.85593 1.17945 1.05504 0.73077 0.76814 0.75455 1.93547 1.85135 1.86001 1.31182 1.93535 1.83439 1.35881 1.82874 1.30435 1.12432 1.15653 1.13715 1.18964 0.83972 0.99409 0.98813 1.21015 0.91523 1.17870 1.25376 0.92039 1.25069 0.97710 0.96167 0.95606 1.69953 1.07768 1.37480 1.37721 0.86474 0.79073 0.81320 0.80427 1.20522 1.21048 1.19778 1.20275 0.91386 0.97711 1.01879 0.92817 0.92814 0.88261 0.85247 0.85045 0.92841 0.92774 0.87968 0.89211 0.90221 0.75446 0.86274 0.86034 0.94881 0.94806 0.92573 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.14 10.50 -19.67 -0.21 -3.34 16 3 C 0.09 0.92 6.69 -39.24 -0.26 0.66 16 4 C -0.16 -1.43 9.03 -39.45 -0.36 -1.79 16 5 C -0.17 -1.53 9.03 -39.45 -0.36 -1.88 16 6 C 0.11 1.17 6.66 -39.24 -0.26 0.91 16 7 O -0.31 -3.27 9.72 -19.67 -0.19 -3.46 16 8 C 0.03 0.18 9.81 101.05 0.99 1.17 16 9 C -0.09 -1.00 5.29 -104.49 -0.55 -1.55 16 10 C 0.17 2.09 5.92 -5.19 -0.03 2.06 16 11 N -1.12 -15.79 5.88 -11.65 -0.07 -15.86 16 12 S 2.59 47.81 5.46 -107.50 -0.59 47.22 16 13 O -0.97 -20.74 18.08 -57.54 -1.04 -21.78 16 14 O -0.97 -20.42 17.50 -57.54 -1.01 -21.43 16 15 C -0.59 -11.48 6.01 37.16 0.22 -11.26 16 16 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 17 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 21 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 C -0.09 -1.05 9.60 -39.45 -0.38 -1.43 16 26 H 0.05 0.25 7.66 -51.93 -0.40 -0.14 16 27 H 0.05 0.24 7.66 -51.93 -0.40 -0.15 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.13 0.80 6.29 -52.49 -0.33 0.47 16 30 H 0.13 0.85 6.29 -52.49 -0.33 0.52 16 31 H 0.05 0.29 7.67 -51.93 -0.40 -0.10 16 32 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.10 7.56 -51.93 -0.39 0.71 16 35 H 0.08 0.92 7.85 -51.93 -0.41 0.52 16 36 H 0.41 5.28 8.61 -34.47 -0.30 4.99 16 37 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 38 H 0.12 2.16 8.14 -51.92 -0.42 1.73 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.14 1.54 8.04 -52.49 -0.42 1.12 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -36.88 368.85 -8.22 -45.10 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.85 Total: 2.32 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -0.54 Total: -24.66 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.67 Total: -41.89 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -2.44 Total: -50.01 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 47.81 SS G_CDS: -0.59 Total: 47.22 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.88 -8.22 -45.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264179708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.132 kcal (2) G-P(sol) polarization free energy of solvation -36.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds