Wall clock time and date at job start Tue Mar 31 2020 15:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 5 5 C 1.46901 * 110.99793 * 85.00144 * 4 2 1 6 6 C 1.53000 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47233 * 299.99531 * 6 5 4 8 8 C 1.52996 * 109.47328 * 60.00000 * 6 5 4 9 9 C 1.53001 * 109.46886 * 180.02562 * 6 5 4 10 10 C 1.50697 * 109.47291 * 179.97438 * 9 6 5 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 6 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 6 13 13 N 1.31519 * 119.99563 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.47282 * 89.99593 * 14 12 10 16 16 H 1.48498 * 109.47211 * 210.00040 * 14 12 10 17 17 H 1.48506 * 109.46856 * 330.00220 * 14 12 10 18 18 C 1.50701 * 109.47458 * 120.00104 * 2 1 3 19 19 C 1.38215 * 119.99948 * 99.71885 * 18 2 1 20 20 C 1.38341 * 119.99628 * 179.81597 * 19 18 2 21 21 Cl 1.73602 * 119.99963 * 180.21257 * 20 19 18 22 22 C 1.38377 * 120.00106 * 0.46491 * 20 19 18 23 23 C 1.38182 * 119.99705 * 359.76899 * 22 20 19 24 24 C 1.38336 * 119.99733 * 280.00468 * 18 2 1 25 25 Cl 1.73600 * 120.00071 * 359.97036 * 24 18 2 26 26 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 27 27 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 29 29 H 1.00898 * 110.99995 * 208.95221 * 4 2 1 30 30 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 31 31 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 32 32 H 1.09000 * 109.46986 * 60.00203 * 7 6 5 33 33 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 35 35 H 1.08992 * 109.47554 * 59.99639 * 8 6 5 36 36 H 1.09004 * 109.47108 * 179.97438 * 8 6 5 37 37 H 1.09000 * 109.46870 * 299.99783 * 8 6 5 38 38 H 1.09001 * 109.47109 * 299.99380 * 9 6 5 39 39 H 1.09002 * 109.47508 * 59.99571 * 9 6 5 40 40 H 0.97000 * 119.99425 * 180.02562 * 13 12 10 41 41 H 1.07994 * 120.00671 * 0.02915 * 19 18 2 42 42 H 1.07996 * 120.00106 * 179.74556 * 22 20 19 43 43 H 1.07996 * 119.99732 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5949 -0.5333 -3.5745 7 6 3.9920 -1.0864 -3.2863 8 6 1.6450 -1.6889 -3.8952 9 6 2.6609 0.4200 -4.7694 10 6 3.1663 -0.3242 -5.9784 11 1 3.4159 -1.3723 -5.9021 12 6 3.3101 0.3327 -7.1821 13 7 3.0057 1.6088 -7.2752 14 14 3.9359 -0.5900 -8.6809 15 1 2.7865 -1.1722 -9.4194 16 1 4.6708 0.3472 -9.5679 17 1 4.8479 -1.6787 -8.2468 18 6 2.0324 -0.7104 1.2304 19 6 2.4533 -2.0242 1.1464 20 6 2.9180 -2.6751 2.2752 21 17 3.4519 -4.3236 2.1686 22 6 2.9525 -2.0139 3.4903 23 6 2.5272 -0.7019 3.5751 24 6 2.0667 -0.0494 2.4452 25 17 1.5318 1.5987 2.5520 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.9172 -1.1205 -1.0288 30 1 2.7588 1.0462 -2.1183 31 1 1.0870 0.6163 -2.5525 32 1 3.9455 -1.7653 -2.4349 33 1 4.3574 -1.6244 -4.1609 34 1 4.6687 -0.2630 -3.0577 35 1 0.6497 -1.2950 -4.1005 36 1 2.0099 -2.2271 -4.7701 37 1 1.5984 -2.3679 -3.0438 38 1 1.6658 0.8144 -4.9750 39 1 3.3379 1.2431 -4.5407 40 1 3.1065 2.0708 -8.1221 41 1 2.4226 -2.5416 0.1990 42 1 3.3115 -2.5233 4.3723 43 1 2.5537 -0.1860 4.5235 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554068607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:32 Heat of formation + Delta-G solvation = -9.124879 kcal Electronic energy + Delta-G solvation = -23609.872862 eV Core-core repulsion = 20126.774537 eV Total energy + Delta-G solvation = -3483.098324 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.101 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.14948 -37.82450 -37.06337 -36.48857 -35.34080 -32.49945 -31.03857 -30.93668 -29.08485 -26.88294 -26.34500 -25.46551 -23.91069 -23.09437 -22.14939 -20.52976 -18.25174 -17.39195 -16.45854 -16.23546 -16.08329 -15.33696 -14.77279 -14.58789 -14.36988 -14.16855 -13.89635 -13.34068 -13.15351 -12.87478 -12.63384 -12.58012 -12.29293 -12.08895 -11.99665 -11.96147 -11.78772 -11.34416 -11.27662 -11.15502 -10.98834 -10.90385 -10.76106 -10.70279 -10.49778 -10.25301 -10.12196 -9.68670 -9.33078 -9.02632 -8.89340 -8.80869 -8.31010 -8.20541 -5.95638 -3.95689 0.59059 0.80969 1.68250 1.90036 3.09309 3.33929 3.40564 3.43175 4.11556 4.26317 4.45158 4.50751 4.75744 4.88871 5.03742 5.20898 5.31227 5.40305 5.48074 5.58726 5.66604 5.71859 5.76517 5.78624 5.91739 5.94950 5.98000 6.20529 6.25622 6.28191 6.33134 6.50992 6.65344 6.78414 6.83103 7.18147 7.20872 7.25820 7.35464 7.57676 7.70975 7.85788 8.04656 8.48891 9.09689 9.67157 11.16029 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.002937 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.044688 B = 9531.865496 C =10867.431869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.119 3.881 3 H 0.062 0.938 4 N -0.681 5.681 5 C 0.070 3.930 6 C -0.058 4.058 7 C -0.129 4.129 8 C -0.116 4.116 9 C 0.034 3.966 10 C -0.507 4.507 11 H 0.059 0.941 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.887 3.113 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.274 1.274 18 C -0.059 4.059 19 C -0.088 4.088 20 C -0.030 4.030 21 Cl -0.062 7.062 22 C -0.106 4.106 23 C -0.098 4.098 24 C -0.031 4.031 25 Cl -0.058 7.058 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.340 0.660 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.015 0.985 39 H 0.012 0.988 40 H 0.259 0.741 41 H 0.156 0.844 42 H 0.141 0.859 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.092 -5.723 24.361 25.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 H 0.080 0.920 4 N -0.315 5.315 5 C -0.059 4.059 6 C -0.058 4.058 7 C -0.187 4.187 8 C -0.173 4.173 9 C -0.003 4.003 10 C -0.545 4.545 11 H 0.077 0.923 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.715 3.285 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.060 4.060 19 C -0.107 4.107 20 C -0.056 4.056 21 Cl -0.033 7.033 22 C -0.125 4.125 23 C -0.117 4.117 24 C -0.059 4.059 25 Cl -0.029 7.029 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.160 0.840 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.068 0.932 41 H 0.173 0.827 42 H 0.158 0.842 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.710 -5.819 24.060 24.901 hybrid contribution 1.151 0.208 -0.649 1.337 sum -1.559 -5.611 23.411 24.124 Atomic orbital electron populations 1.21749 0.92894 1.02651 1.01815 1.20505 0.96629 0.95648 0.86329 0.92010 1.60800 1.33452 1.33727 1.03493 1.22183 1.00462 0.93138 0.90083 1.20627 0.94140 0.96710 0.94331 1.21777 0.96954 0.99646 1.00301 1.21595 0.98225 0.97459 1.00008 1.19116 0.96960 0.93538 0.90714 1.21235 1.42820 0.96290 0.94139 0.92292 1.25014 0.95891 0.94823 0.98859 1.69970 1.49271 1.08973 1.25531 0.86672 0.78941 0.79657 0.83192 1.20781 1.21414 1.19941 1.19911 0.97988 0.93762 0.94380 1.21056 0.97405 0.93467 0.98786 1.21029 1.02111 0.87168 0.95340 1.98393 1.88559 1.17784 1.98528 1.20990 1.00548 0.94106 0.96843 1.20958 0.98801 0.94129 0.97838 1.20879 1.02896 0.87213 0.94868 1.98385 1.88472 1.17729 1.98306 0.91623 0.91842 0.92582 0.83959 0.95645 0.91258 0.94941 0.91629 0.94089 0.94139 0.92706 0.93907 0.96672 0.96933 0.93180 0.82677 0.84155 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.35 37.16 0.35 -1.18 16 2 C 0.12 1.43 2.28 -68.86 -0.16 1.27 16 3 H 0.06 0.79 7.01 -51.93 -0.36 0.43 16 4 N -0.68 -9.29 4.82 -107.95 -0.52 -9.81 16 5 C 0.07 1.16 4.45 -3.82 -0.02 1.14 16 6 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 7 C -0.13 -2.36 7.89 37.16 0.29 -2.06 16 8 C -0.12 -2.17 8.07 37.16 0.30 -1.87 16 9 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 10 C -0.51 -13.74 7.65 -34.44 -0.26 -14.00 16 11 H 0.06 1.56 5.68 -52.48 -0.30 1.26 16 12 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 13 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 C -0.06 -0.64 4.99 -104.59 -0.52 -1.16 16 19 C -0.09 -0.93 8.65 -39.55 -0.34 -1.27 16 20 C -0.03 -0.28 6.32 -39.49 -0.25 -0.53 16 21 Cl -0.06 -0.58 28.96 -51.86 -1.50 -2.08 16 22 C -0.11 -0.86 9.83 -39.55 -0.39 -1.24 16 23 C -0.10 -0.81 9.83 -39.55 -0.39 -1.19 16 24 C -0.03 -0.31 6.31 -39.50 -0.25 -0.56 16 25 Cl -0.06 -0.57 26.62 -51.86 -1.38 -1.95 16 26 H 0.06 0.80 7.45 -51.93 -0.39 0.41 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.58 7.26 -51.93 -0.38 0.21 16 29 H 0.34 4.51 5.03 -39.29 -0.20 4.31 16 30 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 31 H 0.07 1.19 7.44 -51.93 -0.39 0.80 16 32 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 33 H 0.06 1.31 6.61 -51.93 -0.34 0.96 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 37 H 0.04 0.71 7.60 -51.93 -0.39 0.32 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.16 1.69 6.72 -52.49 -0.35 1.33 16 42 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -28.54 367.44 -10.39 -38.92 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.30 Total: 0.58 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -1.94 Total: -21.70 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.22 Total: -35.83 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -2.88 Total: -4.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.54 -10.39 -38.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554068607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.799 kcal (2) G-P(sol) polarization free energy of solvation -28.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds