Wall clock time and date at job start Tue Mar 31 2020 15:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47229 * 2 1 4 4 C 1.53001 * 109.46953 * 239.99440 * 2 1 3 5 5 C 1.53002 * 109.46615 * 175.00237 * 4 2 1 6 6 C 1.50709 * 109.46834 * 179.97438 * 5 4 2 7 7 C 1.38267 * 119.97783 * 90.00353 * 6 5 4 8 8 C 1.38200 * 120.03416 * 180.30118 * 7 6 5 9 9 C 1.38350 * 120.00162 * 359.44093 * 8 7 6 10 10 Cl 1.73599 * 120.01871 * 180.27881 * 9 8 7 11 11 C 1.38437 * 119.95862 * 0.55338 * 9 8 7 12 12 Cl 1.73607 * 120.02020 * 179.74487 * 11 9 8 13 13 C 1.38203 * 119.97978 * 270.02186 * 6 5 4 14 14 N 1.46899 * 109.46773 * 119.99627 * 2 1 3 15 15 C 1.46898 * 111.00133 * 274.99786 * 14 2 1 16 16 C 1.53000 * 109.47280 * 179.97438 * 15 14 2 17 17 C 1.53002 * 109.47177 * 180.02562 * 16 15 14 18 18 C 1.50705 * 109.47084 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99804 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99825 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99528 * 179.97438 * 20 18 17 22 22 Si 1.86792 * 120.00138 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47576 * 89.99779 * 22 20 18 24 24 H 1.48509 * 109.47139 * 209.99798 * 22 20 18 25 25 H 1.48505 * 109.47048 * 329.99485 * 22 20 18 26 26 H 1.09001 * 109.47169 * 300.00217 * 1 2 3 27 27 H 1.09000 * 109.47035 * 60.00280 * 1 2 3 28 28 H 1.09000 * 109.47655 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47114 * 55.00666 * 4 2 1 30 30 H 1.08997 * 109.46987 * 295.00184 * 4 2 1 31 31 H 1.09000 * 109.47456 * 60.00687 * 5 4 2 32 32 H 1.08997 * 109.47400 * 299.99695 * 5 4 2 33 33 H 1.08002 * 119.97972 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.99631 * 179.72231 * 8 7 6 35 35 H 1.07997 * 120.00079 * 359.95448 * 13 6 5 36 36 H 1.00904 * 110.99958 * 151.04198 * 14 2 1 37 37 H 1.08995 * 109.47435 * 300.00374 * 15 14 2 38 38 H 1.09002 * 109.47078 * 60.00701 * 15 14 2 39 39 H 1.08995 * 109.47374 * 300.00635 * 16 15 14 40 40 H 1.09003 * 109.47007 * 60.00194 * 16 15 14 41 41 H 1.09000 * 109.46788 * 299.99833 * 17 16 15 42 42 H 1.08998 * 109.46882 * 60.00539 * 17 16 15 43 43 H 0.97007 * 119.99766 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3135 6 6 4.0672 -1.3245 -2.5437 7 6 4.1993 -0.6349 -3.7348 8 6 4.6540 -1.2874 -4.8651 9 6 4.9883 -2.6284 -4.8023 10 17 5.5664 -3.4466 -6.2201 11 6 4.8562 -3.3187 -3.6097 12 17 5.2691 -5.0032 -3.5308 13 6 4.3954 -2.6656 -2.4805 14 7 2.0196 -0.6924 1.1995 15 6 2.0824 0.2227 2.3469 16 6 2.5949 -0.5330 3.5746 17 6 2.6597 0.4200 4.7698 18 6 3.1651 -0.3242 5.9788 19 1 3.4146 -1.3722 5.9025 20 6 3.3088 0.3328 7.1824 21 7 3.7494 -0.3168 8.2376 22 14 2.8765 2.1452 7.3146 23 1 1.4471 2.2871 7.6914 24 1 3.7274 2.7828 8.3514 25 1 3.1115 2.8069 6.0060 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6055 -0.2619 -2.1369 30 1 1.7516 -1.7716 -1.2054 31 1 3.9994 -1.0730 -0.4258 32 1 3.8532 0.4368 -1.3573 33 1 3.9427 0.4131 -3.7830 34 1 4.7526 -0.7492 -5.7962 35 1 4.2924 -3.2034 -1.5497 36 1 2.9172 -1.1205 1.0288 37 1 2.7588 1.0463 2.1182 38 1 1.0870 0.6164 2.5525 39 1 1.9182 -1.3563 3.8031 40 1 3.5902 -0.9271 3.3693 41 1 3.3363 1.2436 4.5414 42 1 1.6642 0.8137 4.9749 43 1 3.8509 0.1455 9.0844 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173538607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:57 Heat of formation + Delta-G solvation = -21.176280 kcal Electronic energy + Delta-G solvation = -22190.714539 eV Core-core repulsion = 18707.093626 eV Total energy + Delta-G solvation = -3483.620912 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.101 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11292 -37.95951 -36.95240 -36.90042 -34.69187 -33.22252 -31.99574 -31.36681 -30.01855 -28.76365 -26.29305 -24.49576 -23.44300 -22.24989 -21.58575 -20.59851 -19.83545 -17.73467 -16.76649 -16.56984 -16.25777 -15.77592 -15.34281 -14.67444 -14.42753 -14.30277 -14.18072 -14.15281 -13.62202 -13.39022 -12.74582 -12.58008 -12.40661 -12.35056 -12.26637 -12.26150 -11.95681 -11.76900 -11.56078 -11.41431 -11.32321 -11.24444 -11.10126 -10.88530 -10.84880 -10.65950 -9.94055 -9.72525 -9.55607 -9.39886 -9.16206 -9.00969 -8.52702 -8.25780 -6.02951 -4.00638 0.48934 0.63874 1.43783 1.80788 2.96598 3.30816 3.37980 3.41305 4.14232 4.16697 4.27045 4.45907 4.57242 4.61274 4.73888 4.77708 4.86654 5.01296 5.21404 5.30871 5.32685 5.38840 5.48212 5.50236 5.56242 5.60642 5.66920 5.77364 5.81323 5.84650 5.98682 6.03826 6.14973 6.16687 6.28472 6.55821 6.59368 6.92464 7.22992 7.35114 7.44732 7.57541 7.81560 8.56258 9.02682 9.59653 11.10606 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.017882 B = 0.001949 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.428865 B =14361.058489 C =15171.229207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.081 3.919 3 H 0.042 0.958 4 C -0.115 4.115 5 C -0.089 4.089 6 C -0.057 4.057 7 C -0.102 4.102 8 C -0.097 4.097 9 C -0.039 4.039 10 Cl -0.054 7.054 11 C -0.027 4.027 12 Cl -0.049 7.049 13 C -0.095 4.095 14 N -0.687 5.687 15 C 0.057 3.943 16 C -0.100 4.100 17 C -0.013 4.013 18 C -0.518 4.518 19 H 0.072 0.928 20 C 0.064 3.936 21 N -0.904 5.904 22 Si 0.881 3.119 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.267 1.267 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.337 0.663 37 H 0.023 0.977 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.013 0.987 42 H 0.011 0.989 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 -1.907 -31.581 31.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 H 0.060 0.940 4 C -0.153 4.153 5 C -0.127 4.127 6 C -0.057 4.057 7 C -0.121 4.121 8 C -0.116 4.116 9 C -0.067 4.067 10 Cl -0.025 7.025 11 C -0.055 4.055 12 Cl -0.020 7.020 13 C -0.114 4.114 14 N -0.320 5.320 15 C -0.072 4.072 16 C -0.138 4.138 17 C -0.051 4.051 18 C -0.556 4.556 19 H 0.090 0.910 20 C -0.137 4.137 21 N -0.544 5.544 22 Si 0.708 3.292 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.191 1.191 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.157 0.843 37 H 0.041 0.959 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.029 0.971 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.275 -2.363 -31.348 31.438 hybrid contribution 0.722 1.241 -0.110 1.440 sum 0.447 -1.122 -31.458 31.481 Atomic orbital electron populations 1.21777 0.94583 1.02330 1.01061 1.21528 0.96039 0.95817 0.89456 0.94027 1.21783 0.93313 1.02289 0.97884 1.20780 0.96550 1.00612 0.94735 1.19975 0.96803 0.93074 0.95868 1.21151 0.98802 1.00632 0.91466 1.21035 0.98864 0.91715 0.99959 1.20784 1.04285 0.93614 0.87983 1.98392 1.87020 1.78887 1.38164 1.20800 1.03611 0.86992 0.94060 1.98405 1.91818 1.13210 1.98533 1.21039 0.98566 0.94302 0.97514 1.60619 1.33342 1.33888 1.04174 1.22188 1.00381 0.93720 0.90894 1.21444 0.99996 0.99129 0.93195 1.19543 0.96203 0.95399 0.93943 1.21154 1.43471 0.98282 0.92735 0.91029 1.25052 0.94748 0.98110 0.95763 1.69925 1.46973 1.36569 1.00884 0.86763 0.78540 0.85918 0.77937 1.20310 1.21443 1.19122 0.92521 0.93035 0.92009 0.91158 0.90602 0.90028 0.90285 0.84407 0.84070 0.83672 0.84313 0.95864 0.91510 0.91966 0.93109 0.96904 0.97086 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.41 37.16 0.35 -1.06 16 2 C 0.08 0.83 2.65 -67.71 -0.18 0.65 16 3 H 0.04 0.43 7.80 -51.93 -0.40 0.03 16 4 C -0.11 -0.90 4.79 -26.73 -0.13 -1.03 16 5 C -0.09 -0.65 5.17 -27.88 -0.14 -0.79 16 6 C -0.06 -0.42 5.13 -104.62 -0.54 -0.96 16 7 C -0.10 -0.66 9.70 -39.58 -0.38 -1.05 16 8 C -0.10 -0.66 9.83 -39.55 -0.39 -1.05 16 9 C -0.04 -0.33 6.32 -39.47 -0.25 -0.58 16 10 Cl -0.05 -0.45 27.96 -51.86 -1.45 -1.90 16 11 C -0.03 -0.24 6.32 -39.47 -0.25 -0.49 16 12 Cl -0.05 -0.45 27.96 -51.86 -1.45 -1.90 16 13 C -0.10 -0.79 9.48 -39.55 -0.38 -1.16 16 14 N -0.69 -8.78 6.31 -106.73 -0.67 -9.45 16 15 C 0.06 0.88 5.48 -3.82 -0.02 0.86 16 16 C -0.10 -1.94 5.41 -26.73 -0.14 -2.09 16 17 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 18 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 19 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 20 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 21 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 22 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 26 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.64 6.37 -51.93 -0.33 0.31 16 32 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 35 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.34 3.98 6.47 -39.29 -0.25 3.72 16 37 H 0.02 0.35 8.05 -51.93 -0.42 -0.06 16 38 H 0.07 1.06 7.44 -51.93 -0.39 0.67 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 42 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -30.84 379.06 -11.51 -42.35 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.76 Total: -2.01 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -2.99 Total: -22.63 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.10 Total: -36.79 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -2.90 Total: -3.80 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.84 -11.51 -42.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173538607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.172 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds