Wall clock time and date at job start Tue Mar 31 2020 15:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47229 * 2 1 4 4 C 1.53001 * 109.46953 * 239.99440 * 2 1 3 5 5 C 1.53002 * 109.46615 * 175.00237 * 4 2 1 6 6 C 1.50709 * 109.46834 * 179.97438 * 5 4 2 7 7 C 1.38267 * 119.97783 * 90.00353 * 6 5 4 8 8 C 1.38200 * 120.03416 * 180.30118 * 7 6 5 9 9 C 1.38350 * 120.00162 * 359.44093 * 8 7 6 10 10 Cl 1.73599 * 120.01871 * 180.27881 * 9 8 7 11 11 C 1.38437 * 119.95862 * 0.55338 * 9 8 7 12 12 Cl 1.73607 * 120.02020 * 179.74487 * 11 9 8 13 13 C 1.38203 * 119.97978 * 270.02186 * 6 5 4 14 14 N 1.46899 * 109.46773 * 119.99627 * 2 1 3 15 15 C 1.46898 * 111.00133 * 274.99786 * 14 2 1 16 16 C 1.53000 * 109.47280 * 179.97438 * 15 14 2 17 17 C 1.53002 * 109.47177 * 180.02562 * 16 15 14 18 18 C 1.50705 * 109.47084 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99804 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99825 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99528 * 179.97438 * 20 18 17 22 22 Si 1.86792 * 120.00138 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47576 * 89.99779 * 22 20 18 24 24 H 1.48509 * 109.47139 * 209.99798 * 22 20 18 25 25 H 1.48505 * 109.47048 * 329.99485 * 22 20 18 26 26 H 1.09001 * 109.47169 * 300.00217 * 1 2 3 27 27 H 1.09000 * 109.47035 * 60.00280 * 1 2 3 28 28 H 1.09000 * 109.47655 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47114 * 55.00666 * 4 2 1 30 30 H 1.08997 * 109.46987 * 295.00184 * 4 2 1 31 31 H 1.09000 * 109.47456 * 60.00687 * 5 4 2 32 32 H 1.08997 * 109.47400 * 299.99695 * 5 4 2 33 33 H 1.08002 * 119.97972 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.99631 * 179.72231 * 8 7 6 35 35 H 1.07997 * 120.00079 * 359.95448 * 13 6 5 36 36 H 1.00904 * 110.99958 * 151.04198 * 14 2 1 37 37 H 1.08995 * 109.47435 * 300.00374 * 15 14 2 38 38 H 1.09002 * 109.47078 * 60.00701 * 15 14 2 39 39 H 1.08995 * 109.47374 * 300.00635 * 16 15 14 40 40 H 1.09003 * 109.47007 * 60.00194 * 16 15 14 41 41 H 1.09000 * 109.46788 * 299.99833 * 17 16 15 42 42 H 1.08998 * 109.46882 * 60.00539 * 17 16 15 43 43 H 0.97007 * 119.99766 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3135 6 6 4.0672 -1.3245 -2.5437 7 6 4.1993 -0.6349 -3.7348 8 6 4.6540 -1.2874 -4.8651 9 6 4.9883 -2.6284 -4.8023 10 17 5.5664 -3.4466 -6.2201 11 6 4.8562 -3.3187 -3.6097 12 17 5.2691 -5.0032 -3.5308 13 6 4.3954 -2.6656 -2.4805 14 7 2.0196 -0.6924 1.1995 15 6 2.0824 0.2227 2.3469 16 6 2.5949 -0.5330 3.5746 17 6 2.6597 0.4200 4.7698 18 6 3.1651 -0.3242 5.9788 19 1 3.4146 -1.3722 5.9025 20 6 3.3088 0.3328 7.1824 21 7 3.7494 -0.3168 8.2376 22 14 2.8765 2.1452 7.3146 23 1 1.4471 2.2871 7.6914 24 1 3.7274 2.7828 8.3514 25 1 3.1115 2.8069 6.0060 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6055 -0.2619 -2.1369 30 1 1.7516 -1.7716 -1.2054 31 1 3.9994 -1.0730 -0.4258 32 1 3.8532 0.4368 -1.3573 33 1 3.9427 0.4131 -3.7830 34 1 4.7526 -0.7492 -5.7962 35 1 4.2924 -3.2034 -1.5497 36 1 2.9172 -1.1205 1.0288 37 1 2.7588 1.0463 2.1182 38 1 1.0870 0.6164 2.5525 39 1 1.9182 -1.3563 3.8031 40 1 3.5902 -0.9271 3.3693 41 1 3.3363 1.2436 4.5414 42 1 1.6642 0.8137 4.9749 43 1 3.8509 0.1455 9.0844 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173538607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:57 Heat of formation + Delta-G solvation = -37.093858 kcal Electronic energy + Delta-G solvation = -22191.404777 eV Core-core repulsion = 18707.093626 eV Total energy + Delta-G solvation = -3484.311150 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.101 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68453 -38.83725 -37.62770 -37.55125 -36.13304 -34.60052 -33.42789 -31.93858 -31.34417 -29.42718 -27.94555 -25.25121 -23.99598 -23.82139 -22.20902 -21.93054 -20.99014 -18.90039 -18.31245 -17.20564 -17.08800 -16.57258 -16.45933 -16.01357 -15.66589 -15.21226 -14.95003 -14.89402 -14.73614 -14.50349 -14.12997 -13.87416 -13.49971 -13.33389 -13.04390 -12.92332 -12.86850 -12.83354 -12.69312 -12.47021 -12.38364 -12.07765 -11.97853 -11.90557 -11.78195 -11.76364 -11.56417 -11.37132 -11.36616 -11.16490 -10.75504 -9.97495 -9.60655 -9.26160 -8.28439 -6.32699 -0.09317 0.08208 0.80987 1.19924 1.36640 1.38512 1.50654 2.37214 2.40764 3.06737 3.28740 3.55940 3.62431 4.00147 4.05726 4.10299 4.18372 4.21188 4.31460 4.38451 4.42493 4.58643 4.69522 4.70938 4.82027 4.83041 4.86399 4.92037 4.95908 5.01511 5.05375 5.11103 5.12741 5.20494 5.33907 5.45920 5.48668 5.55446 5.63554 5.64302 5.68110 6.21799 6.32062 6.59374 6.75912 7.31801 8.88546 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.017882 B = 0.001949 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.428865 B =14361.058489 C =15171.229207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.082 3.918 3 H 0.048 0.952 4 C -0.105 4.105 5 C -0.085 4.085 6 C -0.058 4.058 7 C -0.096 4.096 8 C -0.095 4.095 9 C -0.051 4.051 10 Cl -0.059 7.059 11 C -0.042 4.042 12 Cl -0.061 7.061 13 C -0.106 4.106 14 N -0.695 5.695 15 C 0.071 3.929 16 C -0.092 4.092 17 C -0.010 4.010 18 C -0.533 4.533 19 H 0.028 0.972 20 C -0.001 4.001 21 N -0.953 5.953 22 Si 0.955 3.045 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.244 1.244 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.144 0.856 36 H 0.343 0.657 37 H 0.032 0.968 38 H 0.066 0.934 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.021 0.979 42 H 0.018 0.982 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.560 0.904 -33.668 33.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 H 0.066 0.934 4 C -0.143 4.143 5 C -0.122 4.122 6 C -0.059 4.059 7 C -0.114 4.114 8 C -0.114 4.114 9 C -0.079 4.079 10 Cl -0.030 7.030 11 C -0.070 4.070 12 Cl -0.032 7.032 13 C -0.124 4.124 14 N -0.329 5.329 15 C -0.058 4.058 16 C -0.130 4.130 17 C -0.048 4.048 18 C -0.571 4.571 19 H 0.047 0.953 20 C -0.198 4.198 21 N -0.594 5.594 22 Si 0.778 3.222 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.167 1.167 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.183 0.817 34 H 0.180 0.820 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.036 0.964 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.047 0.434 -33.465 33.484 hybrid contribution 0.974 0.269 0.537 1.145 sum -0.073 0.704 -32.928 32.936 Atomic orbital electron populations 1.21787 0.94560 1.01928 1.01456 1.21606 0.96002 0.96122 0.89041 0.93404 1.21689 0.93711 1.01575 0.97325 1.20735 0.96004 1.01188 0.94298 1.20039 0.96792 0.92640 0.96423 1.21460 0.97520 1.01756 0.90638 1.21330 0.97960 0.91035 1.01075 1.20983 1.04849 0.94376 0.87680 1.98387 1.87129 1.79145 1.38293 1.20928 1.04705 0.86628 0.94734 1.98394 1.92005 1.14220 1.98581 1.21132 0.98974 0.94970 0.97366 1.60545 1.33904 1.33766 1.04672 1.21891 1.00175 0.93591 0.90131 1.21272 0.99733 0.98196 0.93760 1.19495 0.96124 0.95821 0.93393 1.21534 1.43459 0.96982 0.95132 0.95327 1.26105 0.94560 1.03907 0.95186 1.70089 1.48565 1.39042 1.01725 0.85587 0.78628 0.79001 0.78979 1.19188 1.21018 1.16711 0.93935 0.90848 0.92822 0.89367 0.91502 0.90872 0.89047 0.81732 0.81979 0.83789 0.83715 0.94944 0.91560 0.93561 0.93509 0.96103 0.96390 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.41 71.98 0.68 -1.82 16 2 C 0.08 1.44 2.65 44.92 0.12 1.56 16 3 H 0.05 0.82 7.80 -2.39 -0.02 0.81 16 4 C -0.11 -1.36 4.79 30.60 0.15 -1.22 16 5 C -0.08 -1.01 5.17 29.85 0.15 -0.86 16 6 C -0.06 -0.74 5.13 -19.86 -0.10 -0.84 16 7 C -0.10 -0.94 9.70 22.27 0.22 -0.73 16 8 C -0.10 -1.07 9.83 22.29 0.22 -0.85 16 9 C -0.05 -0.81 6.32 22.34 0.14 -0.67 16 10 Cl -0.06 -0.93 27.96 -2.72 -0.08 -1.01 16 11 C -0.04 -0.74 6.32 22.34 0.14 -0.60 16 12 Cl -0.06 -1.14 27.96 -2.72 -0.08 -1.22 16 13 C -0.11 -1.66 9.48 22.29 0.21 -1.45 16 14 N -0.69 -16.57 6.31 -491.58 -3.10 -19.67 16 15 C 0.07 2.08 5.48 86.30 0.47 2.56 16 16 C -0.09 -3.53 5.41 30.59 0.17 -3.37 16 17 C -0.01 -0.49 4.04 29.85 0.12 -0.36 16 18 C -0.53 -31.29 9.66 25.60 0.25 -31.04 16 19 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 20 C 0.00 -0.08 5.47 84.65 0.46 0.39 16 21 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 22 Si 0.96 44.38 27.47 68.60 1.88 46.27 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 26 H 0.04 0.88 7.45 -2.39 -0.02 0.86 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.01 6.37 -2.39 -0.02 1.00 16 32 H 0.09 0.90 8.09 -2.39 -0.02 0.88 16 33 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 34 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 35 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.34 7.58 6.47 -89.69 -0.58 7.00 16 37 H 0.03 0.90 8.05 -2.39 -0.02 0.88 16 38 H 0.07 1.96 7.44 -2.39 -0.02 1.94 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 42 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 43 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -67.89 379.06 2.68 -65.20 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.36 Total: 10.14 kcal Atomic # 6 Polarization: -42.71 SS G_CDS: 3.39 Total: -39.31 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -2.80 Total: -80.07 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.27 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -0.15 Total: -2.23 kcal Total: -67.89 2.68 -65.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173538607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.106 kcal (2) G-P(sol) polarization free energy of solvation -67.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds