Wall clock time and date at job start Tue Mar 31 2020 16:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34669 * 117.00141 * 2 1 4 4 O 1.21433 * 120.00219 * 359.97438 * 3 2 1 5 5 C 1.48093 * 120.00331 * 180.02562 * 3 2 1 6 6 C 1.39158 * 119.63787 * 180.02562 * 5 3 2 7 7 C 1.39351 * 119.20272 * 179.97438 * 6 5 3 8 8 O 1.35756 * 120.76731 * 180.02562 * 7 6 5 9 9 C 1.42906 * 116.99758 * 0.02562 * 8 7 6 10 10 C 1.38962 * 118.47302 * 359.73564 * 7 6 5 11 11 C 1.39506 * 119.19379 * 0.51046 * 10 7 6 12 12 C 1.48240 * 119.62587 * 179.75290 * 11 10 7 13 13 C 1.39313 * 120.16467 * 359.70589 * 12 11 10 14 14 C 1.37993 * 119.94513 * 180.02562 * 13 12 11 15 15 C 1.38463 * 120.27169 * 0.02562 * 14 13 12 16 16 C 1.38089 * 120.33604 * 359.97438 * 15 14 13 17 17 C 1.38775 * 120.04588 * 359.97438 * 16 15 14 18 18 O 1.35641 * 120.13950 * 179.97438 * 17 16 15 19 19 C 1.34815 * 116.99593 * 354.69535 * 18 17 16 20 20 H 1.07997 * 120.00113 * 5.31978 * 19 18 17 21 21 C 1.38660 * 119.99867 * 185.31089 * 19 18 17 22 22 N 1.31553 * 120.00044 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99962 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47350 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47156 * 120.00381 * 23 21 19 26 26 H 1.48499 * 109.47066 * 240.00117 * 23 21 19 27 27 N 1.32439 * 120.73865 * 359.47606 * 11 10 7 28 28 H 1.08994 * 109.47180 * 60.00237 * 1 2 3 29 29 H 1.09000 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46958 * 299.99946 * 1 2 3 31 31 H 1.08003 * 120.40021 * 0.03160 * 6 5 3 32 32 H 1.09001 * 109.46766 * 60.00072 * 9 8 7 33 33 H 1.08998 * 109.46693 * 179.97438 * 9 8 7 34 34 H 1.08995 * 109.47170 * 300.00224 * 9 8 7 35 35 H 1.07992 * 120.39817 * 180.28276 * 10 7 6 36 36 H 1.08000 * 120.03012 * 0.04294 * 13 12 11 37 37 H 1.08000 * 119.86566 * 180.02562 * 14 13 12 38 38 H 1.08010 * 119.83144 * 180.27578 * 15 14 13 39 39 H 1.08001 * 119.97657 * 180.02562 * 16 15 14 40 40 H 0.97002 * 119.99990 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.1999 0.0000 4 8 1.4022 2.2184 -0.0005 5 6 3.5424 1.2774 -0.0006 6 6 4.1662 2.5213 0.0000 7 6 5.5583 2.5837 0.0000 8 8 6.1999 3.7802 0.0010 9 6 5.3842 4.9536 0.0027 10 6 6.2749 1.3931 0.0051 11 6 5.5823 0.1821 -0.0009 12 6 6.3371 -1.0937 -0.0011 13 6 7.7302 -1.0829 -0.0016 14 6 8.4283 -2.2733 -0.0023 15 6 7.7499 -3.4803 -0.0031 16 6 6.3692 -3.5043 -0.0026 17 6 5.6535 -2.3153 -0.0008 18 8 4.2973 -2.3367 -0.0009 19 6 3.7043 -3.5422 -0.1138 20 1 4.3032 -4.4409 -0.1124 21 6 2.3254 -3.6281 -0.2316 22 7 1.5959 -2.5334 -0.2336 23 14 1.5036 -5.2984 -0.3873 24 1 2.5379 -6.3636 -0.3593 25 1 0.5606 -5.4935 0.7431 26 1 0.7589 -5.3660 -1.6703 27 7 4.2581 0.1596 -0.0008 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.5786 3.4275 0.0013 32 1 4.7554 4.9577 0.8930 33 1 6.0208 5.8384 0.0038 34 1 4.7546 4.9597 -0.8870 35 1 7.3547 1.4052 0.0098 36 1 8.2634 -0.1437 -0.0011 37 1 9.5082 -2.2634 -0.0023 38 1 8.3034 -4.4078 0.0008 39 1 5.8459 -4.4491 -0.0028 40 1 0.6312 -2.5935 -0.3164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:55 Heat of formation + Delta-G solvation = -56.941696 kcal Electronic energy + Delta-G solvation = -28235.930378 eV Core-core repulsion = 24176.649151 eV Total energy + Delta-G solvation = -4059.281227 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.53829 -39.39250 -39.01750 -37.70058 -36.31135 -35.67454 -32.41520 -32.23712 -31.25631 -29.37293 -28.59822 -27.61604 -27.02661 -25.28100 -24.27404 -23.23027 -21.60861 -20.79726 -20.16749 -18.29889 -17.99121 -17.24709 -16.44321 -16.11245 -15.90254 -15.87012 -15.53214 -15.48484 -15.04074 -14.43833 -14.20325 -13.88264 -13.82057 -13.50519 -13.19760 -13.18905 -12.92973 -12.48525 -12.36162 -12.12678 -11.67281 -11.56947 -11.36974 -11.28307 -11.19069 -10.90206 -10.79943 -10.65306 -10.42710 -10.12619 -9.93813 -9.38756 -9.32615 -8.80430 -8.75979 -8.62547 -7.88405 -7.08426 -6.34637 -3.92897 0.84974 1.48479 2.28969 2.40840 3.06558 3.12122 3.13338 3.14748 3.17438 3.37356 3.96235 4.25238 4.60677 4.73118 4.90711 5.07238 5.11305 5.14426 5.21320 5.25745 5.39252 5.42373 5.48669 5.65466 5.71825 5.74667 5.79587 5.90351 5.96550 6.12378 6.18037 6.19828 6.35064 6.60933 6.69831 6.86034 7.01001 7.09131 7.21123 7.30778 7.35037 7.38936 7.78578 7.99437 8.27218 8.64603 9.01760 9.74448 10.71380 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.006095 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.790602 B = 4592.727763 C = 7536.999219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.253 6.253 3 C 0.513 3.487 4 O -0.532 6.532 5 C 0.141 3.859 6 C -0.229 4.229 7 C 0.156 3.844 8 O -0.312 6.312 9 C 0.025 3.975 10 C -0.192 4.192 11 C 0.227 3.773 12 C -0.154 4.154 13 C -0.042 4.042 14 C -0.228 4.228 15 C -0.057 4.057 16 C -0.238 4.238 17 C 0.176 3.824 18 O -0.109 6.109 19 C -0.399 4.399 20 H 0.089 0.911 21 C 0.048 3.952 22 N -0.801 5.801 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.278 1.278 27 N -0.404 5.404 28 H 0.048 0.952 29 H 0.103 0.897 30 H 0.047 0.953 31 H 0.144 0.856 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.143 0.857 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.624 7.296 0.303 8.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.163 6.163 3 C 0.357 3.643 4 O -0.423 6.423 5 C 0.002 3.998 6 C -0.251 4.251 7 C 0.104 3.896 8 O -0.224 6.224 9 C -0.070 4.070 10 C -0.213 4.213 11 C 0.091 3.909 12 C -0.157 4.157 13 C -0.062 4.062 14 C -0.247 4.247 15 C -0.075 4.075 16 C -0.258 4.258 17 C 0.116 3.884 18 O -0.006 6.006 19 C -0.475 4.475 20 H 0.107 0.893 21 C -0.161 4.161 22 N -0.432 5.432 23 Si 0.754 3.246 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.203 1.203 27 N -0.118 5.118 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.161 0.839 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.634 7.076 0.304 7.961 hybrid contribution -0.373 0.073 -0.091 0.391 sum 3.261 7.149 0.214 7.860 Atomic orbital electron populations 1.23172 0.78132 1.03452 1.00247 1.87335 1.21080 1.27392 1.80467 1.21112 0.88118 0.82751 0.72334 1.90743 1.66229 1.37182 1.48179 1.19850 0.91567 0.88881 0.99543 1.21931 0.93643 0.99462 1.10043 1.18887 0.90152 0.85853 0.94751 1.86039 1.35497 1.12225 1.88627 1.23095 0.96383 0.85609 1.01900 1.21539 1.01586 0.89719 1.08424 1.19604 0.88330 0.91467 0.91507 1.17398 0.91668 0.88353 1.18260 1.20706 0.91628 0.97757 0.96068 1.20438 0.98531 0.92303 1.13472 1.20865 0.93806 0.97123 0.95743 1.21144 0.94175 0.98419 1.12027 1.19299 0.85415 0.91958 0.91719 1.84260 1.12040 1.31339 1.72964 1.21468 0.90696 0.83155 1.52195 0.89332 1.25276 0.95507 0.98718 0.96599 1.70388 1.05290 1.25986 1.41573 0.85835 0.79504 0.81120 0.78093 1.19253 1.20311 1.20322 1.68218 1.06282 1.27879 1.09440 0.93303 0.87891 0.93411 0.83802 0.92381 0.88149 0.92368 0.83898 0.86612 0.87349 0.87428 0.85292 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.20 101.05 1.03 1.83 16 2 O -0.25 -5.71 8.10 -40.41 -0.33 -6.04 16 3 C 0.51 11.12 7.95 34.77 0.28 11.40 16 4 O -0.53 -11.26 16.10 -19.21 -0.31 -11.57 16 5 C 0.14 3.00 6.74 -83.09 -0.56 2.44 16 6 C -0.23 -4.05 8.63 -38.83 -0.33 -4.39 16 7 C 0.16 2.58 6.73 -38.90 -0.26 2.32 16 8 O -0.31 -4.37 10.51 -18.98 -0.20 -4.57 16 9 C 0.03 0.25 9.84 101.05 0.99 1.25 16 10 C -0.19 -3.34 9.42 -38.84 -0.37 -3.71 16 11 C 0.23 4.76 6.73 -83.02 -0.56 4.21 16 12 C -0.15 -3.26 5.89 -104.73 -0.62 -3.88 16 13 C -0.04 -0.74 9.41 -39.27 -0.37 -1.11 16 14 C -0.23 -3.79 10.03 -39.59 -0.40 -4.19 16 15 C -0.06 -1.00 10.03 -39.55 -0.40 -1.40 16 16 C -0.24 -5.00 9.16 -39.44 -0.36 -5.36 16 17 C 0.18 4.15 6.65 -38.73 -0.26 3.89 16 18 O -0.11 -2.93 7.59 0.43 0.00 -2.92 16 19 C -0.40 -10.46 9.49 30.89 0.29 -10.17 16 20 H 0.09 2.18 5.21 -52.49 -0.27 1.91 16 21 C 0.05 1.21 5.49 -17.52 -0.10 1.11 16 22 N -0.80 -20.63 10.82 55.48 0.60 -20.03 16 23 Si 0.93 19.24 29.55 -169.99 -5.02 14.22 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 27 N -0.40 -9.42 7.90 -6.45 -0.05 -9.47 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.10 1.77 6.26 -51.93 -0.32 1.44 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.14 2.26 6.02 -52.48 -0.32 1.95 16 32 H 0.06 0.56 7.71 -51.93 -0.40 0.16 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.56 7.70 -51.93 -0.40 0.16 16 35 H 0.14 2.09 6.18 -52.49 -0.32 1.77 16 36 H 0.12 1.66 6.17 -52.49 -0.32 1.33 16 37 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 39 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 40 H 0.26 6.11 6.55 -40.82 -0.27 5.84 16 LS Contribution 342.23 15.07 5.16 5.16 Total: -1.00 -30.46 342.23 -5.97 -36.43 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -3.83 Total: 4.55 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.98 Total: -5.75 kcal Atomic # 7 Polarization: -30.06 SS G_CDS: 0.55 Total: -29.51 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.83 Total: -25.10 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.46 -5.97 -36.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.515 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds