Wall clock time and date at job start Tue Mar 31 2020 14:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38348 * 119.85916 * 2 1 4 4 C 1.37981 * 120.13715 * 179.97438 * 3 2 1 5 5 C 1.39491 * 119.86117 * 0.02562 * 4 3 2 6 6 C 1.47999 * 120.13632 * 180.02562 * 5 4 3 7 7 C 1.36659 * 126.59268 * 179.97438 * 6 5 4 8 8 C 1.41228 * 105.45066 * 179.97438 * 7 6 5 9 9 C 1.47613 * 126.34117 * 179.97438 * 8 7 6 10 10 O 1.21488 * 119.99812 * 0.02819 * 9 8 7 11 11 O 1.34719 * 120.00253 * 180.02562 * 9 8 7 12 12 C 1.45205 * 117.00428 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47090 * 180.02562 * 12 11 9 14 14 O 1.21291 * 119.99952 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99755 * 180.02562 * 13 12 11 16 16 C 1.37096 * 119.99887 * 179.97438 * 15 13 12 17 17 H 1.07996 * 120.00097 * 359.97438 * 16 15 13 18 18 C 1.38946 * 119.99555 * 179.97438 * 16 15 13 19 19 N 1.31403 * 120.00509 * 359.97438 * 18 16 15 20 20 Si 1.86811 * 119.99643 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46898 * 59.99829 * 20 18 16 22 22 H 1.48503 * 109.46775 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47031 * 300.00148 * 20 18 16 24 24 N 1.31882 * 107.31828 * 0.02562 * 8 7 6 25 25 N 1.28454 * 110.42504 * 359.97438 * 24 8 7 26 26 H 0.97003 * 125.00502 * 179.97438 * 25 24 8 27 27 C 1.39487 * 119.72883 * 0.27816 * 5 4 3 28 28 C 1.37986 * 119.86056 * 359.40261 * 27 5 4 29 29 H 1.09004 * 109.47189 * 90.00759 * 1 2 3 30 30 H 1.09009 * 109.46765 * 210.00241 * 1 2 3 31 31 H 1.08998 * 109.47404 * 330.00210 * 1 2 3 32 32 H 1.08001 * 119.92845 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.07108 * 179.97438 * 4 3 2 34 34 H 1.08000 * 127.27911 * 359.96463 * 7 6 5 35 35 H 1.09001 * 109.46430 * 299.99616 * 12 11 9 36 36 H 1.08999 * 109.47162 * 59.99837 * 12 11 9 37 37 H 0.97006 * 119.99804 * 359.97438 * 15 13 12 38 38 H 0.97006 * 120.00329 * 180.02562 * 19 18 16 39 39 H 1.07999 * 120.07204 * 179.72484 * 27 5 4 40 40 H 1.08001 * 119.93686 * 180.32299 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1998 0.0000 4 6 3.5756 1.2065 0.0005 5 6 4.2760 0.0002 0.0005 6 6 5.7560 0.0003 0.0017 7 6 6.5707 -1.0969 0.0023 8 6 7.8879 -0.5875 0.0027 9 6 9.1326 -1.3809 0.0040 10 8 9.0793 -2.5946 0.0042 11 8 10.3278 -0.7592 0.0048 12 6 11.5097 -1.6027 0.0054 13 6 12.7440 -0.7379 0.0069 14 8 12.6379 0.4704 0.0069 15 7 13.9656 -1.3072 0.0071 16 6 15.0884 -0.5205 0.0079 17 1 14.9940 0.5553 0.0079 18 6 16.3478 -1.1075 0.0088 19 7 16.4627 -2.4165 0.0093 20 14 17.8778 -0.0356 0.0106 21 1 17.8804 0.8212 1.2235 22 1 19.0865 -0.8983 0.0119 23 1 17.8826 0.8223 -1.2015 24 7 7.7999 0.7284 0.0029 25 7 6.5689 1.0953 0.0021 26 1 6.2626 2.0157 0.0024 27 6 3.5758 -1.2062 -0.0059 28 6 2.1960 -1.1997 0.0003 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6523 2.1331 -0.0004 33 1 4.1122 2.1438 0.0001 34 1 6.2707 -2.1344 0.0026 35 1 11.5064 -2.2319 0.8954 36 1 11.5076 -2.2319 -0.8846 37 1 14.0504 -2.2735 0.0068 38 1 17.3420 -2.8263 0.0102 39 1 4.1125 -2.1434 -0.0104 40 1 1.6526 -2.1331 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:30 Heat of formation + Delta-G solvation = -25.274309 kcal Electronic energy + Delta-G solvation = -25373.341405 eV Core-core repulsion = 21347.726130 eV Total energy + Delta-G solvation = -4025.615275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.89262 -40.00752 -39.61980 -38.03403 -36.01316 -34.13098 -33.93600 -32.44568 -31.38179 -31.29799 -30.67905 -28.44229 -26.96218 -25.16926 -24.12313 -23.14163 -22.63155 -21.06904 -20.20680 -19.51219 -18.75511 -18.00465 -17.52321 -16.45485 -16.28239 -16.02836 -15.70415 -15.59755 -15.58200 -15.19413 -14.49308 -14.27180 -14.20757 -13.92613 -13.87076 -13.75616 -13.46175 -12.90866 -12.71318 -12.69840 -12.24917 -11.96490 -11.89389 -11.57266 -11.47540 -11.08851 -11.07268 -10.64382 -10.44827 -10.34742 -10.24247 -10.19652 -9.70991 -9.54077 -9.46412 -8.46772 -8.45088 -8.02462 -6.44619 -3.86413 0.38743 0.90557 1.31083 1.99376 2.33679 2.80623 3.14049 3.19767 3.26133 3.31226 3.36417 3.80593 4.00857 4.14195 4.19431 4.32308 4.40705 4.46331 4.68840 4.86981 4.89735 5.07708 5.10214 5.11514 5.20363 5.21639 5.28135 5.36923 5.55196 5.56655 5.61254 5.76059 5.84685 5.99922 6.00346 6.09055 6.11793 6.43235 6.59054 6.61776 7.50524 7.52746 7.91518 8.02170 8.54969 9.12682 9.45290 9.95974 10.72624 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.047218 B = 0.001715 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.852028 B =16321.379383 C =16893.783054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.082 4.082 3 C -0.114 4.114 4 C -0.111 4.111 5 C -0.024 4.024 6 C 0.049 3.951 7 C -0.151 4.151 8 C 0.007 3.993 9 C 0.551 3.449 10 O -0.503 6.503 11 O -0.309 6.309 12 C 0.060 3.940 13 C 0.440 3.560 14 O -0.572 6.572 15 N -0.554 5.554 16 C -0.302 4.302 17 H 0.105 0.895 18 C 0.025 3.975 19 N -0.898 5.898 20 Si 0.934 3.066 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 N -0.207 5.207 25 N -0.374 5.374 26 H 0.448 0.552 27 C -0.090 4.090 28 C -0.113 4.113 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.170 0.830 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.133 0.867 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.831 2.169 -0.051 31.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.082 4.082 3 C -0.132 4.132 4 C -0.130 4.130 5 C -0.026 4.026 6 C -0.074 4.074 7 C -0.178 4.178 8 C -0.151 4.151 9 C 0.392 3.608 10 O -0.390 6.390 11 O -0.222 6.222 12 C -0.018 4.018 13 C 0.224 3.776 14 O -0.456 6.456 15 N -0.191 5.191 16 C -0.431 4.431 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.539 5.539 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 N -0.044 5.044 25 N -0.091 5.091 26 H 0.294 0.706 27 C -0.109 4.109 28 C -0.131 4.131 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.188 0.812 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.229 0.771 38 H 0.084 0.916 39 H 0.151 0.849 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -30.956 3.396 -0.048 31.142 hybrid contribution 0.347 -0.469 -0.004 0.583 sum -30.609 2.928 -0.052 30.749 Atomic orbital electron populations 1.20836 0.90928 1.03039 1.02571 1.20068 0.96369 0.93124 0.98688 1.20926 0.93610 0.97886 1.00754 1.21057 0.94598 0.96662 1.00648 1.17855 0.87678 0.94310 1.02746 1.19874 0.91399 0.87164 1.08970 1.21653 0.89503 0.99700 1.06939 1.20665 0.92456 0.89625 1.12345 1.19579 0.82989 0.85270 0.72939 1.90849 1.87790 1.13849 1.46513 1.86690 1.13326 1.39711 1.82488 1.22823 0.82586 0.92682 1.03701 1.19309 0.83715 0.88683 0.85872 1.90576 1.86036 1.14090 1.54900 1.41681 1.03670 1.09679 1.64097 1.19679 0.82709 0.92552 1.48187 0.87693 1.25290 0.99321 0.96136 0.96973 1.69605 1.25515 1.08947 1.49797 0.85865 0.79737 0.79148 0.79156 1.19803 1.20901 1.19797 1.73860 1.00475 1.14803 1.15303 1.43705 1.02736 1.09614 1.53035 0.70649 1.21163 0.94098 0.97184 0.98437 1.21014 0.93739 0.97889 1.00503 0.90910 0.91292 0.91394 0.85564 0.86231 0.81232 0.89291 0.89282 0.77148 0.91639 0.84931 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.42 10.01 36.01 0.36 -0.06 16 2 C -0.08 -0.47 5.89 -104.54 -0.62 -1.09 16 3 C -0.11 -0.66 9.68 -39.64 -0.38 -1.04 16 4 C -0.11 -0.72 9.71 -39.21 -0.38 -1.10 16 5 C -0.02 -0.19 5.87 -104.96 -0.62 -0.81 16 6 C 0.05 0.49 6.98 -82.41 -0.58 -0.08 16 7 C -0.15 -1.79 10.16 -39.02 -0.40 -2.19 16 8 C 0.01 0.10 7.14 -82.89 -0.59 -0.49 16 9 C 0.55 9.88 7.97 34.56 0.28 10.16 16 10 O -0.50 -9.27 16.71 -19.26 -0.32 -9.59 16 11 O -0.31 -6.36 9.76 -47.22 -0.46 -6.82 16 12 C 0.06 1.19 5.95 36.01 0.21 1.41 16 13 C 0.44 11.00 7.86 -10.98 -0.09 10.91 16 14 O -0.57 -16.56 16.08 -14.11 -0.23 -16.78 16 15 N -0.55 -14.33 5.29 -10.96 -0.06 -14.39 16 16 C -0.30 -8.50 9.68 -14.94 -0.14 -8.65 16 17 H 0.11 3.08 7.16 -52.49 -0.38 2.70 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 19 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 20 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 24 N -0.21 -3.05 12.22 33.35 0.41 -2.65 16 25 N -0.37 -3.84 6.80 33.31 0.23 -3.61 16 26 H 0.45 2.88 8.08 -190.45 -1.54 1.34 16 27 C -0.09 -0.64 9.58 -39.21 -0.38 -1.02 16 28 C -0.11 -0.69 9.68 -39.63 -0.38 -1.07 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.20 8.08 -51.92 -0.42 -0.22 16 31 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 32 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 33 H 0.12 0.52 7.19 -52.49 -0.38 0.14 16 34 H 0.17 1.67 7.39 -52.49 -0.39 1.28 16 35 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 36 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 37 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.13 0.79 7.09 -52.49 -0.37 0.42 16 40 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -35.48 362.25 -8.53 -44.02 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.46 Total: 6.56 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -3.80 Total: 5.45 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 1.30 Total: -44.32 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -1.01 Total: -33.20 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.48 -8.53 -44.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.743 kcal (2) G-P(sol) polarization free energy of solvation -35.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds