Wall clock time and date at job start Tue Mar 31 2020 15:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29942 * 126.28805 * 2 1 4 4 O 1.21301 * 110.25051 * 180.02562 * 3 2 1 5 5 C 1.33641 * 109.80990 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.54804 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47190 * 119.97429 * 6 5 4 8 8 C 1.53001 * 109.46804 * 239.97150 * 6 5 4 9 9 N 1.46500 * 109.47496 * 359.97005 * 6 5 4 10 10 S 1.65595 * 120.00144 * 187.27372 * 9 6 5 11 11 O 1.42102 * 104.27698 * 186.22524 * 10 9 6 12 12 O 1.42101 * 104.27699 * 314.07656 * 10 9 6 13 13 C 1.81400 * 104.45273 * 70.14938 * 10 9 6 14 14 C 1.52998 * 109.47242 * 171.54156 * 13 10 9 15 15 C 1.50700 * 115.54711 * 66.87634 * 14 13 10 16 16 H 1.07998 * 119.99747 * 265.84728 * 15 14 13 17 17 C 1.37871 * 120.00218 * 85.84604 * 15 14 13 18 18 N 1.31516 * 120.00285 * 177.98702 * 17 15 14 19 19 Si 1.86799 * 120.00067 * 357.99414 * 17 15 14 20 20 H 1.48496 * 109.47505 * 90.80967 * 19 17 15 21 21 H 1.48505 * 109.47135 * 210.81357 * 19 17 15 22 22 H 1.48503 * 109.46986 * 330.80964 * 19 17 15 23 23 C 1.52996 * 117.50071 * 281.20590 * 14 13 10 24 24 C 1.52997 * 117.49826 * 212.54212 * 14 13 10 25 25 N 1.31124 * 106.89983 * 359.97438 * 5 4 3 26 26 H 1.08997 * 109.47799 * 89.96899 * 1 2 3 27 27 H 1.09001 * 109.47177 * 209.97514 * 1 2 3 28 28 H 1.09002 * 109.47028 * 329.97228 * 1 2 3 29 29 H 1.08999 * 109.47391 * 59.99394 * 7 6 5 30 30 H 1.09004 * 109.47028 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.46888 * 299.99109 * 7 6 5 32 32 H 1.09000 * 109.47384 * 74.78340 * 8 6 5 33 33 H 1.08996 * 109.47301 * 194.78560 * 8 6 5 34 34 H 1.09009 * 109.46926 * 314.78216 * 8 6 5 35 35 H 0.96996 * 119.99553 * 7.26605 * 9 6 5 36 36 H 1.09000 * 109.46841 * 291.54730 * 13 10 9 37 37 H 1.09002 * 109.46758 * 51.54452 * 13 10 9 38 38 H 0.96999 * 120.00201 * 180.02562 * 18 17 15 39 39 H 1.08999 * 117.49994 * 359.97438 * 23 14 13 40 40 H 1.08998 * 117.50218 * 145.02317 * 23 14 13 41 41 H 1.09005 * 117.50069 * 214.97714 * 24 14 13 42 42 H 1.09004 * 117.49997 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5298 -0.6212 -0.0015 6 6 4.7969 -1.4371 -0.0018 7 6 4.8353 -2.3200 1.2471 8 6 4.8351 -2.3192 -1.2513 9 7 5.9553 -0.5402 -0.0016 10 16 7.4809 -1.1580 -0.1835 11 8 8.3370 -0.0410 0.0132 12 8 7.5154 -2.2716 0.6985 13 6 7.5424 -1.7112 -1.9100 14 6 8.9752 -2.1130 -2.2660 15 6 9.5039 -3.3321 -1.5552 16 1 10.0750 -3.2214 -0.6453 17 6 9.2586 -4.5888 -2.0664 18 7 9.7534 -5.6503 -1.4681 19 14 8.2235 -4.7839 -3.6092 20 1 9.1057 -4.7606 -4.8034 21 1 7.4955 -6.0771 -3.5566 22 1 7.2463 -3.6689 -3.6938 23 6 9.9673 -0.9905 -2.5765 24 6 9.4377 -1.8784 -3.7054 25 7 2.3030 -1.0841 -0.0009 26 1 -0.3634 0.0006 -1.0276 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5143 29 1 3.9735 -2.9873 1.2470 30 1 5.7516 -2.9104 1.2466 31 1 4.8082 -1.6916 2.1373 32 1 5.0709 -1.7066 -2.1215 33 1 5.5985 -3.0877 -1.1304 34 1 3.8630 -2.7918 -1.3923 35 1 5.8286 0.4155 0.1049 36 1 6.8815 -2.5681 -2.0407 37 1 7.2196 -0.9004 -2.5630 38 1 9.5811 -6.5345 -1.8280 39 1 9.5992 0.0343 -2.5275 40 1 11.0025 -1.1339 -2.2671 41 1 10.1248 -2.6055 -4.1381 42 1 8.7211 -1.4382 -4.3988 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363971872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:38 Heat of formation + Delta-G solvation = 34.817692 kcal Electronic energy + Delta-G solvation = -27639.460919 eV Core-core repulsion = 23751.895380 eV Total energy + Delta-G solvation = -3887.565539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.83469 -38.21160 -37.20852 -36.41762 -36.25015 -35.31259 -32.76984 -32.22042 -30.58983 -29.43690 -29.07066 -27.11979 -25.58506 -24.82790 -22.97300 -21.76189 -21.02406 -19.48853 -18.78849 -18.35031 -18.33390 -17.12975 -16.75406 -16.08892 -15.55061 -15.18851 -14.77198 -14.59351 -14.19695 -14.01730 -13.91945 -13.79230 -13.39514 -13.07557 -12.95620 -12.75917 -12.68051 -12.57822 -12.11778 -11.85679 -11.73980 -11.58273 -11.52927 -11.46552 -11.29714 -11.26689 -10.99348 -10.70046 -10.65633 -10.43482 -10.32571 -10.12019 -9.82050 -9.57276 -9.21047 -8.72628 -8.52623 -6.21604 -4.30241 0.74431 0.88069 1.96093 2.38628 2.94217 3.17233 3.27982 3.29004 3.47438 3.78145 4.26634 4.29708 4.39533 4.61868 4.67134 4.75586 4.77745 4.95910 5.01090 5.03832 5.09047 5.22640 5.36540 5.42502 5.54626 5.59021 5.66541 5.70506 5.76263 5.86416 5.92509 5.98943 6.04036 6.16541 6.39338 6.49079 6.61331 6.82215 6.89141 7.02199 7.53922 7.91621 8.32123 8.83306 9.38913 10.89553 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.004289 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.822258 B = 6527.053497 C = 6968.095486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.168 3.832 3 N -0.386 5.386 4 O 0.078 5.922 5 C 0.196 3.804 6 C 0.287 3.713 7 C -0.184 4.184 8 C -0.199 4.199 9 N -1.130 6.130 10 S 2.614 3.386 11 O -0.959 6.959 12 O -0.931 6.931 13 C -0.587 4.587 14 C 0.001 3.999 15 C -0.510 4.510 16 H 0.087 0.913 17 C 0.090 3.910 18 N -0.881 5.881 19 Si 0.870 3.130 20 H -0.275 1.275 21 H -0.289 1.289 22 H -0.256 1.256 23 C -0.177 4.177 24 C -0.185 4.185 25 N -0.473 5.473 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.127 0.873 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.417 0.583 36 H 0.137 0.863 37 H 0.109 0.891 38 H 0.268 0.732 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.970 9.161 0.038 18.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 N -0.095 5.095 4 O 0.021 5.979 5 C -0.026 4.026 6 C 0.195 3.805 7 C -0.242 4.242 8 C -0.257 4.257 9 N -0.887 5.887 10 S 2.710 3.290 11 O -0.949 6.949 12 O -0.921 6.921 13 C -0.719 4.719 14 C -0.002 4.002 15 C -0.547 4.547 16 H 0.105 0.895 17 C -0.115 4.115 18 N -0.516 5.516 19 Si 0.697 3.303 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.180 1.180 23 C -0.214 4.214 24 C -0.224 4.224 25 N -0.207 5.207 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.145 0.855 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.251 0.749 36 H 0.155 0.845 37 H 0.128 0.872 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.933 9.241 0.745 18.434 hybrid contribution -0.890 0.197 -1.570 1.816 sum -16.822 9.438 -0.826 19.307 Atomic orbital electron populations 1.20144 0.82781 1.04729 1.04353 1.25968 1.00655 0.83392 1.00426 1.74641 0.89288 1.23837 1.21758 1.85261 1.22485 1.24539 1.65601 1.28816 0.96747 0.82032 0.95012 1.18546 0.76355 0.86385 0.99225 1.22843 1.07195 0.99945 0.94265 1.23032 1.06539 1.00535 0.95597 1.56355 1.23458 1.17614 1.91246 1.05103 0.71202 0.74348 0.78348 1.93540 1.63042 1.52295 1.86022 1.93517 1.83907 1.53540 1.61144 1.30787 1.07926 1.10627 1.22536 1.18868 0.87005 0.97645 0.96687 1.20338 1.35839 0.87223 1.11283 0.89478 1.24938 0.94477 0.95526 0.96581 1.69885 1.43389 0.98495 1.39818 0.86991 0.81598 0.77638 0.84050 1.20056 1.21595 1.17994 1.23028 1.00295 0.94438 1.03644 1.23011 1.03985 1.03599 0.91782 1.71832 0.99105 1.29193 1.20552 0.89270 0.88887 0.89500 0.90268 0.85509 0.91502 0.90031 0.88172 0.88594 0.74904 0.84494 0.87210 0.92215 0.89949 0.88595 0.88890 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 36.01 0.38 -0.06 16 2 C 0.17 1.95 8.22 -156.37 -1.28 0.66 16 3 N -0.39 -5.00 12.16 30.90 0.38 -4.62 16 4 O 0.08 1.01 10.43 18.11 0.19 1.20 16 5 C 0.20 2.50 6.70 -13.06 -0.09 2.41 16 6 C 0.29 3.72 1.09 -132.97 -0.14 3.57 16 7 C -0.18 -2.42 8.26 37.16 0.31 -2.12 16 8 C -0.20 -2.46 6.79 37.16 0.25 -2.21 16 9 N -1.13 -15.42 5.45 -0.40 0.00 -15.43 16 10 S 2.61 47.28 4.89 -107.50 -0.53 46.75 16 11 O -0.96 -19.38 18.00 -57.54 -1.04 -20.41 16 12 O -0.93 -19.51 14.66 -57.54 -0.84 -20.35 16 13 C -0.59 -10.56 3.95 37.16 0.15 -10.41 16 14 C 0.00 0.02 0.77 -155.67 -0.12 -0.10 16 15 C -0.51 -13.47 8.99 -34.44 -0.31 -13.78 16 16 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 17 C 0.09 2.42 5.47 -17.82 -0.10 2.33 16 18 N -0.88 -25.55 13.96 55.43 0.77 -24.78 16 19 Si 0.87 19.80 24.96 -169.99 -4.24 15.56 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.26 -5.20 5.70 56.52 0.32 -4.88 16 23 C -0.18 -3.48 9.88 -26.69 -0.26 -3.74 16 24 C -0.18 -3.64 7.69 -26.69 -0.21 -3.84 16 25 N -0.47 -5.95 11.45 -9.87 -0.11 -6.07 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.13 1.95 5.36 -51.93 -0.28 1.68 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.91 7.03 -51.93 -0.37 0.54 16 33 H 0.10 1.36 6.15 -51.93 -0.32 1.04 16 34 H 0.10 1.04 7.97 -51.92 -0.41 0.63 16 35 H 0.42 4.89 7.90 -34.47 -0.27 4.62 16 36 H 0.14 2.38 3.28 -51.92 -0.17 2.21 16 37 H 0.11 1.57 8.07 -51.92 -0.42 1.15 16 38 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 41 H 0.09 1.91 7.41 -51.93 -0.38 1.53 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -32.85 348.85 -7.24 -40.09 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -5.64 Total: 10.10 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: -1.43 Total: -27.30 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 1.03 Total: -50.89 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -1.69 Total: -39.57 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.24 Total: 15.56 kcal Atomic # 16 Polarization: 47.28 SS G_CDS: -0.53 Total: 46.75 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.85 -7.24 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363971872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.907 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds