Wall clock time and date at job start Tue Mar 31 2020 15:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47004 * 2 1 4 4 O 1.42892 * 109.46957 * 119.99903 * 2 1 3 5 5 C 1.35947 * 117.00102 * 276.01736 * 4 2 1 6 6 C 1.38709 * 120.03170 * 179.49690 * 5 4 2 7 7 C 1.38148 * 119.97237 * 179.97438 * 6 5 4 8 8 C 1.38456 * 120.02839 * 0.02562 * 7 6 5 9 9 F 1.35100 * 119.97091 * 179.97438 * 8 7 6 10 10 C 1.38457 * 120.06212 * 0.25305 * 8 7 6 11 11 C 1.38150 * 120.02519 * 359.49393 * 10 8 7 12 12 C 1.50698 * 109.47211 * 240.00174 * 2 1 3 13 13 O 1.21282 * 119.99792 * 247.43186 * 12 2 1 14 14 N 1.34773 * 120.00310 * 67.42531 * 12 2 1 15 15 C 1.37142 * 119.99841 * 6.20486 * 14 12 2 16 16 H 1.08004 * 120.00059 * 47.76209 * 15 14 12 17 17 C 1.38890 * 120.00331 * 227.76000 * 15 14 12 18 18 N 1.31419 * 120.00034 * 202.51976 * 17 15 14 19 19 Si 1.86798 * 119.99745 * 22.51231 * 17 15 14 20 20 H 1.48502 * 109.46989 * 95.18501 * 19 17 15 21 21 H 1.48500 * 109.47234 * 215.18334 * 19 17 15 22 22 H 1.48500 * 109.47362 * 335.18947 * 19 17 15 23 23 C 1.39786 * 120.00182 * 186.20328 * 14 12 2 24 24 C 1.38961 * 120.07612 * 7.09008 * 23 14 12 25 25 C 1.38089 * 119.91944 * 179.74140 * 24 23 14 26 26 C 1.38309 * 120.07510 * 0.53026 * 25 24 23 27 27 C 1.38301 * 120.15946 * 359.72259 * 26 25 24 28 28 C 1.38083 * 120.07787 * 0.02562 * 27 26 25 29 29 H 1.08995 * 109.47609 * 174.41034 * 1 2 3 30 30 H 1.09003 * 109.47162 * 294.41592 * 1 2 3 31 31 H 1.09000 * 109.47182 * 54.41030 * 1 2 3 32 32 H 1.08002 * 120.01816 * 0.02562 * 6 5 4 33 33 H 1.08001 * 119.99005 * 179.97438 * 7 6 5 34 34 H 1.07997 * 119.98416 * 179.72274 * 10 8 7 35 35 H 1.08000 * 120.01469 * 180.23667 * 11 10 8 36 36 H 0.97003 * 119.99842 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.04090 * 0.02562 * 24 23 14 38 38 H 1.07995 * 119.95972 * 180.25482 * 25 24 23 39 39 H 1.08002 * 119.91702 * 179.69720 * 26 25 24 40 40 H 1.07997 * 119.96504 * 179.97438 * 27 26 25 41 41 H 1.07998 * 120.04127 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0923 0.0575 2.3096 6 6 2.5368 -0.5362 3.4818 7 6 2.6242 0.2080 4.6423 8 6 2.2679 1.5459 4.6360 9 9 2.3533 2.2725 5.7717 10 6 1.8185 2.1385 3.4681 11 6 1.7351 1.3978 2.3049 12 6 2.0324 -0.7104 -1.2305 13 8 2.6146 -1.7690 -1.1243 14 7 1.8346 -0.1694 -2.4489 15 6 1.2912 1.0847 -2.5623 16 1 1.6744 1.8957 -1.9608 17 6 0.2481 1.3118 -3.4508 18 7 0.0171 2.5264 -3.8963 19 14 -0.8263 -0.1092 -4.0127 20 1 -2.0414 -0.1776 -3.1617 21 1 -1.2243 0.1005 -5.4279 22 1 -0.0675 -1.3802 -3.8949 23 6 2.1834 -0.8864 -3.5970 24 6 2.5953 -2.2095 -3.4934 25 6 2.9339 -2.9165 -4.6303 26 6 2.8741 -2.3058 -5.8698 27 6 2.4696 -0.9875 -5.9761 28 6 2.1245 -0.2761 -4.8440 29 1 -0.3634 -1.0227 -0.1001 30 1 -0.3633 0.4248 0.9358 31 1 -0.3633 0.5981 -0.8357 32 1 2.8153 -1.5797 3.4870 33 1 2.9699 -0.2541 5.5552 34 1 1.5366 3.1810 3.4656 35 1 1.3882 1.8612 1.3931 36 1 -0.7112 2.6850 -4.5171 37 1 2.6460 -2.6858 -2.5254 38 1 3.2502 -3.9461 -4.5509 39 1 3.1442 -2.8597 -6.7567 40 1 2.4244 -0.5137 -6.9455 41 1 1.8091 0.7534 -4.9277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072680121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:30 Heat of formation + Delta-G solvation = -32.047611 kcal Electronic energy + Delta-G solvation = -27856.350584 eV Core-core repulsion = 23810.521635 eV Total energy + Delta-G solvation = -4045.828949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -48.81280 -40.61348 -39.72863 -37.81612 -36.80224 -35.30945 -32.44800 -31.99284 -30.99313 -30.10022 -29.23160 -28.74920 -25.55644 -24.35416 -23.27628 -22.47907 -21.77248 -21.10446 -19.52059 -18.50631 -18.14293 -17.21883 -16.67322 -16.12464 -15.95905 -15.62423 -15.55689 -15.22062 -14.64491 -14.61828 -14.30968 -13.99619 -13.70990 -13.42806 -13.35792 -13.02670 -12.96435 -12.71177 -12.60248 -12.41427 -12.35770 -12.02929 -11.78588 -11.54132 -11.29904 -11.08513 -10.91173 -10.79993 -10.50573 -10.35907 -10.17964 -9.69680 -9.21368 -8.89234 -8.53256 -8.19099 -8.00945 -7.18072 -6.82968 -4.59666 1.13596 1.23176 1.97297 2.13908 2.96944 3.01694 3.09170 3.22071 3.34391 3.57619 3.93583 4.19232 4.31184 4.43552 4.68776 4.73899 4.76125 5.04837 5.20103 5.32487 5.38042 5.41103 5.55822 5.58187 5.68371 5.84488 5.85615 5.98946 6.08470 6.10939 6.15802 6.26610 6.29795 6.35018 6.46686 6.57816 6.71722 6.75242 7.05590 7.17083 7.23176 7.29863 7.49692 7.59367 7.78694 8.05084 8.57812 8.89724 9.18024 10.21599 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.003597 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.788814 B = 7781.787887 C = 8731.008771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.086 3.914 3 H 0.101 0.899 4 O -0.288 6.288 5 C 0.135 3.865 6 C -0.128 4.128 7 C -0.114 4.114 8 C 0.046 3.954 9 F -0.146 7.146 10 C -0.109 4.109 11 C -0.185 4.185 12 C 0.494 3.506 13 O -0.540 6.540 14 N -0.396 5.396 15 C -0.384 4.384 16 H 0.109 0.891 17 C 0.095 3.905 18 N -0.836 5.836 19 Si 0.850 3.150 20 H -0.273 1.273 21 H -0.274 1.274 22 H -0.243 1.243 23 C 0.173 3.827 24 C -0.182 4.182 25 C -0.107 4.107 26 C -0.171 4.171 27 C -0.108 4.108 28 C -0.156 4.156 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.282 0.718 37 H 0.172 0.828 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.938 -2.432 7.591 8.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.027 3.973 3 H 0.119 0.881 4 O -0.200 6.200 5 C 0.088 3.912 6 C -0.147 4.147 7 C -0.133 4.133 8 C 0.027 3.973 9 F -0.125 7.125 10 C -0.128 4.128 11 C -0.204 4.204 12 C 0.285 3.715 13 O -0.421 6.421 14 N -0.107 5.107 15 C -0.510 4.510 16 H 0.127 0.873 17 C -0.118 4.118 18 N -0.467 5.467 19 Si 0.674 3.326 20 H -0.199 1.199 21 H -0.199 1.199 22 H -0.166 1.166 23 C 0.076 3.924 24 C -0.202 4.202 25 C -0.126 4.126 26 C -0.190 4.190 27 C -0.127 4.127 28 C -0.177 4.177 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.092 0.908 37 H 0.188 0.812 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.138 -2.917 7.601 8.220 hybrid contribution -0.788 0.039 -0.444 0.906 sum 0.350 -2.877 7.156 7.721 Atomic orbital electron populations 1.22257 0.92518 1.03825 1.04224 1.22023 0.95943 0.96919 0.82388 0.88135 1.86191 1.80254 1.37912 1.15641 1.19141 0.94731 0.90167 0.87152 1.20278 1.03650 1.01166 0.89611 1.20890 1.01104 0.92272 0.98994 1.17556 1.06579 0.90349 0.82810 1.91465 1.94599 1.77498 1.48938 1.20936 0.99843 1.00849 0.91143 1.21336 1.05765 0.93608 0.99667 1.20269 0.81559 0.84941 0.84727 1.90323 1.43163 1.22767 1.85882 1.41205 1.52150 1.15534 1.01774 1.18930 1.18086 0.84231 1.29736 0.87337 1.25359 0.95813 0.96398 0.94213 1.69792 1.28717 1.21213 1.26943 0.87194 0.81391 0.84902 0.79161 1.19872 1.19878 1.16591 1.18319 0.95322 0.91326 0.87384 1.22525 1.02294 0.93565 1.01831 1.20983 1.00052 0.99048 0.92485 1.20917 1.05228 0.95720 0.97129 1.20854 0.99665 0.94498 0.97646 1.21225 1.03853 1.01628 0.90969 0.91935 0.91747 0.87882 0.84153 0.84359 0.84545 0.83639 0.90752 0.81173 0.86968 0.87364 0.86811 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.01 37.16 0.33 -2.54 16 2 C 0.09 1.57 1.94 -27.88 -0.05 1.52 16 3 H 0.10 1.73 5.29 -51.93 -0.27 1.46 16 4 O -0.29 -5.12 9.35 -39.37 -0.37 -5.49 16 5 C 0.13 2.02 6.54 -39.23 -0.26 1.76 16 6 C -0.13 -1.66 9.98 -39.44 -0.39 -2.05 16 7 C -0.11 -1.32 10.02 -39.53 -0.40 -1.71 16 8 C 0.05 0.58 7.30 -39.42 -0.29 0.29 16 9 F -0.15 -1.86 17.27 2.25 0.04 -1.82 16 10 C -0.11 -1.34 10.02 -39.53 -0.40 -1.74 16 11 C -0.19 -2.52 8.30 -39.44 -0.33 -2.85 16 12 C 0.49 10.78 6.92 -10.99 -0.08 10.71 16 13 O -0.54 -12.64 13.02 -14.25 -0.19 -12.83 16 14 N -0.40 -9.00 2.23 -58.98 -0.13 -9.13 16 15 C -0.38 -8.86 6.52 -14.94 -0.10 -8.96 16 16 H 0.11 2.57 7.44 -52.48 -0.39 2.18 16 17 C 0.09 2.22 3.45 -17.49 -0.06 2.16 16 18 N -0.84 -20.37 13.96 55.49 0.77 -19.59 16 19 Si 0.85 18.89 25.64 -169.99 -4.36 14.53 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.24 -5.66 5.58 56.52 0.32 -5.34 16 23 C 0.17 3.93 4.04 -83.70 -0.34 3.59 16 24 C -0.18 -3.94 8.98 -39.37 -0.35 -4.30 16 25 C -0.11 -1.99 10.04 -39.61 -0.40 -2.39 16 26 C -0.17 -3.01 10.04 -39.53 -0.40 -3.41 16 27 C -0.11 -2.03 10.04 -39.62 -0.40 -2.43 16 28 C -0.16 -3.40 6.70 -39.37 -0.26 -3.66 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.92 7.27 -51.93 -0.38 0.54 16 31 H 0.10 1.88 6.31 -51.93 -0.33 1.55 16 32 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.15 1.92 5.66 -52.49 -0.30 1.62 16 36 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 37 H 0.17 3.84 4.71 -55.26 -0.26 3.58 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 39 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.14 3.31 5.59 -52.49 -0.29 3.02 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -26.52 338.16 -7.70 -34.22 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -4.40 Total: 11.03 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -4.16 Total: -16.01 kcal Atomic # 7 Polarization: -29.37 SS G_CDS: 0.64 Total: -28.72 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.55 Total: -18.31 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.36 Total: 14.53 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.52 -7.70 -34.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072680121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.169 kcal (2) G-P(sol) polarization free energy of solvation -26.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds