Wall clock time and date at job start Tue Mar 31 2020 16:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45205 * 109.47185 * 2 1 4 4 C 1.34229 * 117.00096 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99949 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00196 * 179.97438 * 4 3 2 7 7 F 1.39900 * 109.46709 * 85.00480 * 6 4 3 8 8 F 1.39897 * 109.47069 * 325.00572 * 6 4 3 9 9 C 1.52997 * 109.47242 * 205.00165 * 6 4 3 10 10 N 1.46506 * 109.47289 * 180.02562 * 9 6 4 11 11 C 1.39931 * 120.00240 * 180.02562 * 10 9 6 12 12 C 1.38866 * 120.01739 * 359.72821 * 11 10 9 13 13 C 1.38116 * 119.97587 * 179.74281 * 12 11 10 14 14 C 1.38695 * 120.01964 * 0.51093 * 13 12 11 15 15 O 1.36011 * 119.97998 * 179.74569 * 14 13 12 16 16 C 1.42902 * 116.99677 * 0.02562 * 15 14 13 17 17 C 1.50698 * 109.46859 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99996 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00059 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00274 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00098 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.46942 * 90.00151 * 21 19 17 23 23 H 1.48497 * 109.47508 * 209.99848 * 21 19 17 24 24 H 1.48497 * 109.46985 * 330.00558 * 21 19 17 25 25 C 1.38694 * 120.04195 * 359.76031 * 14 13 12 26 26 C 1.38107 * 120.01964 * 359.97438 * 25 14 13 27 27 H 1.08993 * 109.47643 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47406 * 300.00541 * 1 2 3 29 29 H 1.09009 * 109.47018 * 59.99573 * 1 2 3 30 30 H 1.09001 * 109.47125 * 240.00376 * 2 1 3 31 31 H 1.08998 * 109.47472 * 120.00262 * 2 1 3 32 32 H 1.09001 * 109.47289 * 60.00043 * 9 6 4 33 33 H 1.09004 * 109.47261 * 300.00299 * 9 6 4 34 34 H 0.97001 * 119.99251 * 0.02562 * 10 9 6 35 35 H 1.07996 * 120.01376 * 359.97438 * 12 11 10 36 36 H 1.07998 * 119.98638 * 180.22554 * 13 12 11 37 37 H 1.09000 * 109.47193 * 299.99829 * 16 15 14 38 38 H 1.09000 * 109.47144 * 60.00491 * 16 15 14 39 39 H 0.97000 * 120.00098 * 179.97438 * 20 19 17 40 40 H 1.08002 * 119.99194 * 179.97438 * 25 14 13 41 41 H 1.08003 * 120.01475 * 179.97438 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 9 3.9922 3.4129 1.3138 8 9 3.1009 3.7809 -0.7573 9 6 5.3240 2.9086 -0.6090 10 7 5.8843 4.2623 -0.6089 11 6 7.1667 4.4888 -1.1210 12 6 7.9108 3.4299 -1.6242 13 6 9.1744 3.6553 -2.1342 14 6 9.7042 4.9370 -2.1343 15 8 10.9506 5.1572 -2.6321 16 6 11.6565 4.0227 -3.1388 17 6 13.0081 4.4569 -3.6444 18 1 13.2991 5.4952 -3.5844 19 6 13.8733 3.5286 -4.1836 20 7 15.0531 3.9074 -4.6244 21 14 13.3703 1.7326 -4.2867 22 1 12.6892 1.4829 -5.5826 23 1 14.5778 0.8738 -4.1888 24 1 12.4438 1.4132 -3.1710 25 6 8.9639 5.9944 -1.6269 26 6 7.6980 5.7718 -1.1214 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.2684 2.5381 -1.6326 33 1 5.9628 2.2514 -0.0189 34 1 5.3662 5.0015 -0.2539 35 1 7.5003 2.4310 -1.6200 36 1 9.7519 2.8324 -2.5289 37 1 11.7844 3.2892 -2.3428 38 1 11.0894 3.5771 -3.9560 39 1 15.6619 3.2542 -5.0034 40 1 9.3773 6.9921 -1.6270 41 1 7.1217 6.5952 -0.7259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167852284.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:05 Heat of formation + Delta-G solvation = -185.361167 kcal Electronic energy + Delta-G solvation = -27054.654325 eV Core-core repulsion = 22571.407977 eV Total energy + Delta-G solvation = -4483.246348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.89344 -47.88113 -41.23074 -39.61475 -37.81439 -37.42563 -35.06517 -32.77793 -32.49144 -30.98200 -30.71048 -28.72654 -27.36290 -25.36931 -23.66905 -23.21353 -22.00716 -21.36349 -20.98402 -19.39914 -18.64718 -18.33140 -17.73785 -17.30944 -17.01718 -16.64842 -16.19841 -15.53305 -15.26110 -14.99047 -14.83721 -14.74295 -14.62112 -14.24848 -14.23306 -14.13041 -13.87405 -13.57842 -13.43573 -13.15648 -12.87423 -12.68882 -12.50334 -12.37275 -12.28120 -12.22736 -11.88655 -11.26881 -11.25004 -11.20145 -11.06474 -10.56148 -10.49744 -9.96209 -9.30409 -9.26821 -8.75050 -8.66613 -6.90193 -6.21116 -4.22443 1.00198 1.29086 1.62726 1.96203 2.90626 3.02014 3.15513 3.19158 3.26345 3.26625 3.75339 3.86861 4.16891 4.26292 4.28743 4.28987 4.32087 4.61763 4.86625 4.94336 4.96894 5.09657 5.12691 5.15398 5.16878 5.29707 5.57104 5.62836 5.70093 5.74790 6.19125 6.34990 6.42315 6.47787 6.63240 6.78485 6.80735 6.91589 7.26398 7.44081 7.55795 8.07718 8.59437 8.89416 9.35464 10.91288 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.002211 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.113415 B =12662.377723 C =13856.298911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.058 3.942 3 O -0.338 6.338 4 C 0.438 3.562 5 O -0.458 6.458 6 C 0.313 3.687 7 F -0.166 7.166 8 F -0.168 7.168 9 C 0.105 3.895 10 N -0.753 5.753 11 C 0.155 3.845 12 C -0.150 4.150 13 C -0.170 4.170 14 C 0.105 3.895 15 O -0.306 6.306 16 C 0.169 3.831 17 C -0.527 4.527 18 H 0.086 0.914 19 C 0.077 3.923 20 N -0.889 5.889 21 Si 0.873 3.127 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.265 1.265 25 C -0.119 4.119 26 C -0.143 4.143 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.402 0.598 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.017 0.983 38 H 0.012 0.988 39 H 0.269 0.731 40 H 0.130 0.870 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.864 -6.343 10.785 33.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 O -0.254 6.254 4 C 0.275 3.725 5 O -0.342 6.342 6 C 0.275 3.725 7 F -0.147 7.147 8 F -0.149 7.149 9 C -0.022 4.022 10 N -0.390 5.390 11 C 0.057 3.943 12 C -0.172 4.172 13 C -0.190 4.190 14 C 0.057 3.943 15 O -0.219 6.219 16 C 0.095 3.905 17 C -0.564 4.564 18 H 0.104 0.896 19 C -0.126 4.126 20 N -0.527 5.527 21 Si 0.699 3.301 22 H -0.197 1.197 23 H -0.205 1.205 24 H -0.189 1.189 25 C -0.138 4.138 26 C -0.165 4.165 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.237 0.763 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.035 0.965 38 H 0.030 0.970 39 H 0.079 0.921 40 H 0.148 0.852 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -30.383 -6.729 10.654 32.893 hybrid contribution -0.497 -1.064 0.075 1.177 sum -30.880 -7.793 10.729 33.607 Atomic orbital electron populations 1.21838 0.91779 1.03492 1.03991 1.23306 0.96076 0.78667 1.03421 1.86573 1.22278 1.34005 1.82508 1.23634 0.82509 0.91471 0.74858 1.90797 1.60343 1.40983 1.42119 1.20877 0.91741 0.82980 0.76930 1.93158 1.96886 1.88661 1.35970 1.93150 1.74146 1.72374 1.75224 1.22029 0.88417 0.88776 1.02929 1.43944 1.16283 1.06569 1.72224 1.17429 0.84793 0.93894 0.98137 1.20384 0.95166 0.97434 1.04263 1.21169 0.96616 0.96889 1.04307 1.19123 0.86750 0.92996 0.95408 1.86165 1.23840 1.38199 1.73717 1.20939 0.92216 0.84306 0.93048 1.20793 0.96758 0.98155 1.40729 0.89612 1.24711 0.94598 0.98765 0.94534 1.69858 1.07618 1.34890 1.40294 0.86888 0.78819 0.85063 0.79287 1.19680 1.20502 1.18922 1.20196 0.93668 0.98357 1.01604 1.20271 0.96090 0.94720 1.05412 0.89624 0.91162 0.91085 0.90325 0.90418 0.88647 0.87874 0.76311 0.86482 0.85347 0.96550 0.97027 0.92115 0.85213 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 10.29 37.16 0.38 -0.14 16 2 C 0.06 0.32 6.19 37.16 0.23 0.55 16 3 O -0.34 -2.75 10.05 -39.25 -0.39 -3.15 16 4 C 0.44 3.96 7.34 36.00 0.26 4.23 16 5 O -0.46 -4.82 15.84 -18.75 -0.30 -5.12 16 6 C 0.31 2.74 1.99 -27.89 -0.06 2.69 16 7 F -0.17 -1.55 16.91 2.25 0.04 -1.51 16 8 F -0.17 -1.53 16.77 2.25 0.04 -1.50 16 9 C 0.10 0.96 3.96 -4.04 -0.02 0.95 16 10 N -0.75 -7.90 5.60 -58.58 -0.33 -8.22 16 11 C 0.16 2.08 6.66 -83.70 -0.56 1.52 16 12 C -0.15 -2.21 9.31 -39.39 -0.37 -2.58 16 13 C -0.17 -3.04 9.03 -39.46 -0.36 -3.39 16 14 C 0.11 2.07 6.69 -39.24 -0.26 1.81 16 15 O -0.31 -7.28 10.12 -19.78 -0.20 -7.48 16 16 C 0.17 4.23 3.56 36.00 0.13 4.36 16 17 C -0.53 -15.39 9.99 -34.44 -0.34 -15.74 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 20 N -0.89 -26.92 13.96 55.43 0.77 -26.14 16 21 Si 0.87 20.85 27.47 -169.99 -4.67 16.18 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.26 -6.00 6.54 56.52 0.37 -5.64 16 25 C -0.12 -1.95 9.98 -39.46 -0.39 -2.35 16 26 C -0.14 -1.95 9.89 -39.40 -0.39 -2.34 16 27 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 30 H 0.08 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.08 0.40 8.13 -51.93 -0.42 -0.03 16 32 H 0.10 0.82 7.96 -51.93 -0.41 0.40 16 33 H 0.10 0.96 7.67 -51.93 -0.40 0.56 16 34 H 0.40 3.66 8.37 -40.82 -0.34 3.32 16 35 H 0.12 1.46 6.73 -52.49 -0.35 1.11 16 36 H 0.13 2.33 6.29 -52.49 -0.33 2.00 16 37 H 0.02 0.41 6.72 -51.93 -0.35 0.06 16 38 H 0.01 0.29 7.09 -51.93 -0.37 -0.08 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 41 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -32.36 361.82 -6.52 -38.88 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.10 Total: 0.92 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -1.83 Total: -8.32 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.45 Total: -34.37 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.89 Total: -15.74 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.08 Total: -3.01 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.36 -6.52 -38.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167852284.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.482 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds