Wall clock time and date at job start Tue Mar 31 2020 16:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45205 * 109.47185 * 2 1 4 4 C 1.34229 * 117.00096 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99949 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00196 * 179.97438 * 4 3 2 7 7 F 1.39900 * 109.46709 * 85.00480 * 6 4 3 8 8 F 1.39897 * 109.47069 * 325.00572 * 6 4 3 9 9 C 1.52997 * 109.47242 * 205.00165 * 6 4 3 10 10 N 1.46506 * 109.47289 * 180.02562 * 9 6 4 11 11 C 1.39931 * 120.00240 * 180.02562 * 10 9 6 12 12 C 1.38866 * 120.01739 * 359.72821 * 11 10 9 13 13 C 1.38116 * 119.97587 * 179.74281 * 12 11 10 14 14 C 1.38695 * 120.01964 * 0.51093 * 13 12 11 15 15 O 1.36011 * 119.97998 * 179.74569 * 14 13 12 16 16 C 1.42902 * 116.99677 * 0.02562 * 15 14 13 17 17 C 1.50698 * 109.46859 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99996 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00059 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00274 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00098 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.46942 * 90.00151 * 21 19 17 23 23 H 1.48497 * 109.47508 * 209.99848 * 21 19 17 24 24 H 1.48497 * 109.46985 * 330.00558 * 21 19 17 25 25 C 1.38694 * 120.04195 * 359.76031 * 14 13 12 26 26 C 1.38107 * 120.01964 * 359.97438 * 25 14 13 27 27 H 1.08993 * 109.47643 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47406 * 300.00541 * 1 2 3 29 29 H 1.09009 * 109.47018 * 59.99573 * 1 2 3 30 30 H 1.09001 * 109.47125 * 240.00376 * 2 1 3 31 31 H 1.08998 * 109.47472 * 120.00262 * 2 1 3 32 32 H 1.09001 * 109.47289 * 60.00043 * 9 6 4 33 33 H 1.09004 * 109.47261 * 300.00299 * 9 6 4 34 34 H 0.97001 * 119.99251 * 0.02562 * 10 9 6 35 35 H 1.07996 * 120.01376 * 359.97438 * 12 11 10 36 36 H 1.07998 * 119.98638 * 180.22554 * 13 12 11 37 37 H 1.09000 * 109.47193 * 299.99829 * 16 15 14 38 38 H 1.09000 * 109.47144 * 60.00491 * 16 15 14 39 39 H 0.97000 * 120.00098 * 179.97438 * 20 19 17 40 40 H 1.08002 * 119.99194 * 179.97438 * 25 14 13 41 41 H 1.08003 * 120.01475 * 179.97438 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 9 3.9922 3.4129 1.3138 8 9 3.1009 3.7809 -0.7573 9 6 5.3240 2.9086 -0.6090 10 7 5.8843 4.2623 -0.6089 11 6 7.1667 4.4888 -1.1210 12 6 7.9108 3.4299 -1.6242 13 6 9.1744 3.6553 -2.1342 14 6 9.7042 4.9370 -2.1343 15 8 10.9506 5.1572 -2.6321 16 6 11.6565 4.0227 -3.1388 17 6 13.0081 4.4569 -3.6444 18 1 13.2991 5.4952 -3.5844 19 6 13.8733 3.5286 -4.1836 20 7 15.0531 3.9074 -4.6244 21 14 13.3703 1.7326 -4.2867 22 1 12.6892 1.4829 -5.5826 23 1 14.5778 0.8738 -4.1888 24 1 12.4438 1.4132 -3.1710 25 6 8.9639 5.9944 -1.6269 26 6 7.6980 5.7718 -1.1214 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.2684 2.5381 -1.6326 33 1 5.9628 2.2514 -0.0189 34 1 5.3662 5.0015 -0.2539 35 1 7.5003 2.4310 -1.6200 36 1 9.7519 2.8324 -2.5289 37 1 11.7844 3.2892 -2.3428 38 1 11.0894 3.5771 -3.9560 39 1 15.6619 3.2542 -5.0034 40 1 9.3773 6.9921 -1.6270 41 1 7.1217 6.5952 -0.7259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167852284.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:04 Heat of formation + Delta-G solvation = -205.613106 kcal Electronic energy + Delta-G solvation = -27055.532515 eV Core-core repulsion = 22571.407977 eV Total energy + Delta-G solvation = -4484.124538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.59923 -48.58632 -41.88504 -40.93698 -39.00386 -38.25803 -36.19341 -34.92067 -32.91498 -32.03119 -31.85333 -30.49439 -28.59137 -26.18013 -25.05804 -24.06388 -23.05397 -22.34402 -22.29755 -20.10086 -19.57191 -19.34209 -18.96956 -18.47273 -18.15503 -17.63558 -17.24580 -16.85378 -16.48248 -16.26074 -15.88693 -15.69946 -15.66357 -15.22392 -15.06359 -14.99371 -14.85046 -14.75211 -14.30885 -14.26667 -13.79848 -13.72776 -13.69414 -13.39186 -13.20527 -13.14763 -12.98683 -12.91517 -12.63777 -12.13193 -11.96502 -11.90233 -11.83845 -11.71345 -11.33363 -10.92537 -10.49150 -9.91852 -8.42437 -8.10765 -6.52641 0.32091 0.41955 0.66320 0.69828 1.31528 1.34512 1.44974 2.14519 2.23817 2.25354 2.48463 2.73247 2.88379 2.92531 3.07573 3.21387 3.91862 3.92511 3.93250 4.01976 4.17656 4.24270 4.25879 4.33528 4.45147 4.58341 4.60309 4.61248 4.82366 4.86948 4.92497 5.01680 5.16951 5.23942 5.26910 5.29571 5.58508 5.69207 5.96227 6.00546 6.21247 6.51611 6.65026 6.88133 7.12179 8.74103 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.002211 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.113415 B =12662.377723 C =13856.298911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.344 6.344 4 C 0.442 3.558 5 O -0.475 6.475 6 C 0.320 3.680 7 F -0.169 7.169 8 F -0.169 7.169 9 C 0.100 3.900 10 N -0.742 5.742 11 C 0.174 3.826 12 C -0.153 4.153 13 C -0.178 4.178 14 C 0.055 3.945 15 O -0.339 6.339 16 C 0.184 3.816 17 C -0.553 4.553 18 H 0.034 0.966 19 C 0.019 3.981 20 N -0.935 5.935 21 Si 0.951 3.049 22 H -0.257 1.257 23 H -0.270 1.270 24 H -0.244 1.244 25 C -0.121 4.121 26 C -0.137 4.137 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.411 0.589 35 H 0.142 0.858 36 H 0.121 0.879 37 H 0.023 0.977 38 H 0.022 0.978 39 H 0.276 0.724 40 H 0.134 0.866 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.251 -8.345 11.694 37.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.259 6.259 4 C 0.280 3.720 5 O -0.361 6.361 6 C 0.282 3.718 7 F -0.150 7.150 8 F -0.150 7.150 9 C -0.026 4.026 10 N -0.379 5.379 11 C 0.074 3.926 12 C -0.175 4.175 13 C -0.198 4.198 14 C 0.008 3.992 15 O -0.253 6.253 16 C 0.110 3.890 17 C -0.591 4.591 18 H 0.053 0.947 19 C -0.180 4.180 20 N -0.574 5.574 21 Si 0.772 3.228 22 H -0.181 1.181 23 H -0.195 1.195 24 H -0.167 1.167 25 C -0.140 4.140 26 C -0.158 4.158 27 H 0.124 0.876 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.248 0.752 35 H 0.160 0.840 36 H 0.139 0.861 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.085 0.915 40 H 0.151 0.849 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -33.839 -8.709 11.590 36.813 hybrid contribution 0.371 -0.340 -0.119 0.517 sum -33.468 -9.049 11.471 36.518 Atomic orbital electron populations 1.21873 0.90137 1.04781 1.03905 1.23609 0.97387 0.77519 1.03823 1.86576 1.21688 1.35623 1.82058 1.23601 0.82762 0.91249 0.74406 1.90792 1.60741 1.41486 1.43124 1.20743 0.91434 0.82944 0.76677 1.93157 1.96881 1.88701 1.36225 1.93153 1.74212 1.72392 1.75225 1.22161 0.88668 0.87919 1.03840 1.43943 1.15157 1.07707 1.71045 1.17510 0.85456 0.93470 0.96195 1.20577 0.94110 0.99080 1.03781 1.21184 0.97845 0.95824 1.04900 1.19496 0.85946 0.95068 0.98664 1.86071 1.26283 1.37759 1.75192 1.20559 0.90365 0.84789 0.93317 1.21046 0.99614 0.96260 1.42178 0.94739 1.25779 0.94179 1.04690 0.93368 1.70009 1.09084 1.37229 1.41042 0.85672 0.79217 0.77419 0.80528 1.18094 1.19463 1.16724 1.20400 0.94505 0.97897 1.01242 1.20575 0.95017 0.96022 1.04225 0.87637 0.91202 0.91181 0.89932 0.90072 0.87464 0.87419 0.75177 0.84022 0.86126 0.95930 0.96028 0.91515 0.84859 0.82456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.29 71.98 0.74 0.03 16 2 C 0.05 0.45 6.19 71.98 0.45 0.90 16 3 O -0.34 -4.94 10.05 -51.40 -0.52 -5.45 16 4 C 0.44 7.04 7.34 71.23 0.52 7.56 16 5 O -0.48 -9.03 15.84 21.96 0.35 -8.68 16 6 C 0.32 4.75 1.99 29.85 0.06 4.81 16 7 F -0.17 -2.72 16.91 44.97 0.76 -1.96 16 8 F -0.17 -2.62 16.77 44.97 0.75 -1.87 16 9 C 0.10 1.51 3.96 86.38 0.34 1.85 16 10 N -0.74 -12.84 5.60 -339.25 -1.90 -14.74 16 11 C 0.17 4.11 6.66 38.15 0.25 4.36 16 12 C -0.15 -4.13 9.31 22.39 0.21 -3.92 16 13 C -0.18 -6.20 9.03 22.35 0.20 -6.00 16 14 C 0.05 2.17 6.69 22.49 0.15 2.32 16 15 O -0.34 -16.80 10.12 -93.67 -0.95 -17.75 16 16 C 0.18 9.45 3.56 71.24 0.25 9.70 16 17 C -0.55 -33.96 9.99 25.60 0.26 -33.71 16 18 H 0.03 2.37 8.06 -2.91 -0.02 2.35 16 19 C 0.02 1.12 5.47 84.65 0.46 1.58 16 20 N -0.94 -58.50 13.96 21.45 0.30 -58.20 16 21 Si 0.95 42.90 27.47 68.60 1.88 44.78 16 22 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 25 C -0.12 -3.90 9.98 22.35 0.22 -3.68 16 26 C -0.14 -3.35 9.89 22.39 0.22 -3.13 16 27 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.08 0.69 8.13 -2.39 -0.02 0.68 16 31 H 0.08 0.69 8.13 -2.39 -0.02 0.67 16 32 H 0.11 1.45 7.96 -2.39 -0.02 1.43 16 33 H 0.11 1.63 7.67 -2.38 -0.02 1.61 16 34 H 0.41 5.88 8.37 -92.71 -0.78 5.10 16 35 H 0.14 3.06 6.73 -2.91 -0.02 3.04 16 36 H 0.12 4.29 6.29 -2.91 -0.02 4.27 16 37 H 0.02 1.13 6.72 -2.39 -0.02 1.11 16 38 H 0.02 1.06 7.09 -2.39 -0.02 1.05 16 39 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 41 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -73.33 361.82 5.26 -68.07 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.24 Total: 13.11 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 4.34 Total: -17.31 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: -1.60 Total: -72.94 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -1.12 Total: -31.88 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 1.51 Total: -3.83 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.78 kcal Total: -73.33 5.26 -68.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167852284.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.546 kcal (2) G-P(sol) polarization free energy of solvation -73.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds