Wall clock time and date at job start Tue Mar 31 2020 15:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 C 1.50701 * 109.47211 * 120.00466 * 2 1 3 5 5 N 1.28024 * 119.99875 * 359.97438 * 4 2 1 6 6 N 1.40104 * 119.99541 * 180.02562 * 5 4 2 7 7 C 1.38545 * 119.99665 * 179.97438 * 6 5 4 8 8 N 1.29751 * 125.30969 * 180.02562 * 7 6 5 9 9 C 1.32608 * 116.97069 * 180.02562 * 8 7 6 10 10 C 1.48314 * 122.31120 * 180.02562 * 9 8 7 11 11 C 1.39381 * 120.12491 * 179.70003 * 10 9 8 12 12 C 1.38006 * 119.86845 * 179.72008 * 11 10 9 13 13 C 1.38341 * 120.12534 * 0.53389 * 12 11 10 14 14 C 1.38325 * 120.25390 * 359.76338 * 13 12 11 15 15 C 1.38005 * 120.12614 * 359.95956 * 14 13 12 16 16 C 1.34472 * 115.38787 * 0.02562 * 9 8 7 17 17 S 1.76107 * 125.31112 * 359.70444 * 7 6 5 18 18 C 1.53005 * 109.46471 * 239.99972 * 2 1 3 19 19 C 1.50700 * 109.47331 * 60.00166 * 18 2 1 20 20 H 1.08000 * 119.99454 * 0.02562 * 19 18 2 21 21 C 1.37871 * 119.99884 * 179.97438 * 19 18 2 22 22 N 1.31515 * 120.00375 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99824 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46828 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46887 * 119.99950 * 23 21 19 26 26 H 1.48502 * 109.46717 * 240.00096 * 23 21 19 27 27 H 1.09007 * 109.46376 * 299.99965 * 1 2 3 28 28 H 1.08996 * 109.47100 * 59.99550 * 1 2 3 29 29 H 1.09000 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46783 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47009 * 299.99945 * 3 2 1 32 32 H 1.08998 * 109.47156 * 60.00128 * 3 2 1 33 33 H 1.07995 * 119.99962 * 180.27481 * 4 2 1 34 34 H 0.96999 * 120.00331 * 0.02562 * 6 5 4 35 35 H 1.08003 * 120.07140 * 359.97325 * 11 10 9 36 36 H 1.08002 * 119.93836 * 180.29589 * 12 11 10 37 37 H 1.07995 * 119.87089 * 179.73837 * 13 12 11 38 38 H 1.07998 * 119.93896 * 179.97438 * 14 13 12 39 39 H 1.08004 * 120.06513 * 180.02562 * 15 14 13 40 40 H 1.07999 * 125.88418 * 179.97438 * 16 9 8 41 41 H 1.09004 * 109.46658 * 179.97438 * 18 2 1 42 42 H 1.09000 * 109.47011 * 299.99643 * 18 2 1 43 43 H 0.96998 * 120.00249 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.2005 -1.1967 2.0733 6 7 1.6676 -1.8567 3.2174 7 6 0.7673 -2.3824 4.1299 8 7 1.0847 -3.0106 5.2199 9 6 0.0860 -3.4465 5.9755 10 6 0.3134 -4.1779 7.2456 11 6 -0.7706 -4.6102 8.0077 12 6 -0.5529 -5.2954 9.1857 13 6 0.7382 -5.5436 9.6161 14 6 1.8178 -5.1115 8.8670 15 6 1.6121 -4.4304 7.6845 16 6 -1.1474 -3.1797 5.5109 17 16 -0.9865 -2.2952 3.9954 18 6 2.0399 -0.7213 -1.2493 19 6 1.5375 -0.0109 -2.4798 20 1 0.9171 0.8675 -2.3806 21 6 1.8709 -0.4817 -3.7320 22 7 2.6278 -1.5504 -3.8527 23 14 1.2488 0.3994 -5.2572 24 1 0.4244 1.5664 -4.8530 25 1 2.4041 0.8661 -6.0651 26 1 0.4239 -0.5338 -6.0660 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.0942 -0.8053 1.4035 34 1 2.6212 -1.9450 3.3711 35 1 -1.7790 -4.4131 7.6749 36 1 -1.3920 -5.6351 9.7746 37 1 0.9039 -6.0765 10.5407 38 1 2.8236 -5.3077 9.2080 39 1 2.4558 -4.0938 7.1001 40 1 -2.0767 -3.4552 5.9874 41 1 3.1299 -0.7209 -1.2496 42 1 1.6765 -1.7490 -1.2492 43 1 2.8620 -1.8819 -4.7337 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755593607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:26 Heat of formation + Delta-G solvation = 100.272529 kcal Electronic energy + Delta-G solvation = -23625.158105 eV Core-core repulsion = 20183.572915 eV Total energy + Delta-G solvation = -3441.585190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09989 -38.67194 -37.97336 -35.91054 -32.97353 -32.18859 -31.19299 -30.62730 -28.42162 -27.12737 -26.51100 -24.94008 -24.00467 -22.66214 -22.26551 -21.89225 -20.00585 -18.47191 -18.00622 -16.93324 -16.55061 -16.41966 -16.23452 -15.43908 -15.03620 -14.69350 -14.61622 -14.14455 -13.77317 -13.63160 -13.54169 -13.12045 -13.06031 -12.92814 -12.34216 -12.13550 -11.86933 -11.48046 -11.30110 -11.14707 -11.06540 -11.03906 -10.86407 -10.69937 -10.40855 -10.29053 -10.14077 -9.83210 -9.67720 -9.44818 -9.35881 -9.15127 -9.05654 -8.65088 -8.42768 -7.53245 -6.06890 -4.08506 0.52737 1.17204 1.20720 1.27095 1.85162 2.33894 2.37144 2.97477 3.27591 3.36143 3.38691 3.79193 4.23967 4.40748 4.66177 4.75295 4.89983 5.03827 5.08809 5.16974 5.25104 5.29541 5.34085 5.47516 5.66282 5.74758 5.82744 5.85961 5.89335 6.01365 6.23737 6.26925 6.32106 6.36972 6.41959 6.55506 6.67459 6.75312 6.86736 6.95494 6.97848 7.10277 7.52424 7.59991 7.67440 7.90886 8.26285 8.32274 8.95827 9.55298 11.04539 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.029492 B = 0.001985 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.195424 B =14100.894596 C =14306.230059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.013 4.013 3 C -0.124 4.124 4 C 0.123 3.877 5 N -0.262 5.262 6 N -0.548 5.548 7 C 0.373 3.627 8 N -0.547 5.547 9 C 0.143 3.857 10 C -0.015 4.015 11 C -0.104 4.104 12 C -0.123 4.123 13 C -0.119 4.119 14 C -0.124 4.124 15 C -0.087 4.087 16 C -0.296 4.296 17 S 0.121 5.879 18 C 0.039 3.961 19 C -0.511 4.511 20 H 0.063 0.937 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.107 0.893 34 H 0.396 0.604 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.175 0.825 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 -3.810 23.270 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.016 4.016 3 C -0.182 4.182 4 C -0.093 4.093 5 N -0.065 5.065 6 N -0.275 5.275 7 C 0.001 3.999 8 N -0.272 5.272 9 C 0.013 3.987 10 C -0.018 4.018 11 C -0.123 4.123 12 C -0.141 4.141 13 C -0.137 4.137 14 C -0.142 4.142 15 C -0.106 4.106 16 C -0.437 4.437 17 S 0.371 5.629 18 C 0.001 3.999 19 C -0.550 4.550 20 H 0.081 0.919 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.719 3.281 24 H -0.196 1.196 25 H -0.211 1.211 26 H -0.211 1.211 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.124 0.876 34 H 0.237 0.763 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.150 0.850 40 H 0.192 0.808 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.614 -3.658 22.710 23.678 hybrid contribution 1.331 -0.225 -0.157 1.359 sum -4.283 -3.883 22.553 23.282 Atomic orbital electron populations 1.21641 0.93746 1.01778 1.00632 1.19873 0.96659 0.94787 0.90282 1.21729 1.00609 0.94476 1.01393 1.26707 0.96694 0.92231 0.93620 1.74323 1.28087 1.09514 0.94563 1.44672 1.05839 1.57816 1.19199 1.23443 0.92082 0.94466 0.89956 1.66212 1.34743 1.20470 1.05755 1.18118 0.86796 0.99031 0.94801 1.18162 0.93761 0.98088 0.91819 1.21151 0.98277 0.98148 0.94744 1.21032 0.97133 0.99401 0.96487 1.21226 0.92782 0.99931 0.99787 1.21140 0.99098 0.98856 0.95130 1.21325 0.96686 0.96851 0.95741 1.26527 1.01881 1.13113 1.02224 1.85352 1.01747 1.55190 1.20647 1.19157 0.96415 0.95407 0.88940 1.21178 1.31372 1.12233 0.90177 0.91853 1.25008 0.95215 0.95058 0.99173 1.69966 1.36867 1.23047 1.23485 0.86554 0.78621 0.79717 0.83233 1.19635 1.21121 1.21107 0.94341 0.91440 0.92990 0.93026 0.90389 0.94509 0.87564 0.76292 0.85708 0.85817 0.86111 0.85898 0.85033 0.80819 0.96138 0.96185 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 7.45 37.16 0.28 -1.89 16 2 C -0.01 -0.24 0.75 -155.66 -0.12 -0.35 16 3 C -0.12 -2.03 8.20 37.16 0.30 -1.72 16 4 C 0.12 1.98 9.56 -13.87 -0.13 1.84 16 5 N -0.26 -4.25 9.74 32.67 0.32 -3.93 16 6 N -0.55 -8.17 6.42 30.78 0.20 -7.97 16 7 C 0.37 5.66 8.58 -87.69 -0.75 4.91 16 8 N -0.55 -8.21 9.91 -10.49 -0.10 -8.31 16 9 C 0.14 1.94 6.61 -84.72 -0.56 1.38 16 10 C -0.02 -0.18 5.88 -104.90 -0.62 -0.80 16 11 C -0.10 -1.00 9.47 -39.24 -0.37 -1.37 16 12 C -0.12 -1.00 10.03 -39.63 -0.40 -1.40 16 13 C -0.12 -0.96 10.04 -39.51 -0.40 -1.36 16 14 C -0.12 -1.13 10.03 -39.63 -0.40 -1.53 16 15 C -0.09 -0.98 9.63 -39.24 -0.38 -1.36 16 16 C -0.30 -3.60 10.57 29.40 0.31 -3.29 16 17 S 0.12 1.66 23.03 -107.50 -2.48 -0.82 16 18 C 0.04 0.90 4.02 -27.88 -0.11 0.79 16 19 C -0.51 -12.97 7.65 -34.44 -0.26 -13.24 16 20 H 0.06 1.54 5.68 -52.49 -0.30 1.25 16 21 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 22 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 23 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H 0.04 0.62 8.06 -51.93 -0.42 0.21 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.05 0.98 8.06 -51.93 -0.42 0.56 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.37 6.62 -51.93 -0.34 1.02 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.11 1.49 8.00 -52.49 -0.42 1.07 16 34 H 0.40 5.15 8.76 -182.60 -1.60 3.55 16 35 H 0.13 0.96 6.59 -52.48 -0.35 0.61 16 36 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 1.54 7.67 -52.48 -0.40 1.13 16 40 H 0.17 1.59 6.80 -52.49 -0.36 1.23 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -29.34 375.09 -11.44 -40.77 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.04 Total: 1.81 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -3.70 Total: -17.97 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 1.15 Total: -45.00 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.48 Total: -0.82 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.34 -11.44 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755593607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.046 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds