Wall clock time and date at job start Tue Mar 31 2020 15:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47133 * 2 1 4 4 C 1.53000 * 109.47166 * 119.99978 * 2 1 3 5 5 N 1.46893 * 109.47005 * 177.03899 * 4 2 1 6 6 C 1.46903 * 111.00166 * 287.91230 * 5 4 2 7 7 C 1.50693 * 109.47339 * 160.45063 * 6 5 4 8 8 H 1.08010 * 120.00069 * 4.70310 * 7 6 5 9 9 C 1.37878 * 120.00546 * 184.70478 * 7 6 5 10 10 N 1.31519 * 119.99277 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00321 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46801 * 90.00129 * 11 9 7 13 13 H 1.48507 * 109.47053 * 209.99933 * 11 9 7 14 14 H 1.48493 * 109.47223 * 330.00276 * 11 9 7 15 15 C 1.46908 * 110.99924 * 163.96048 * 5 4 2 16 16 C 1.52995 * 109.46914 * 293.95209 * 15 5 4 17 17 H 1.09005 * 109.47197 * 60.00355 * 16 15 5 18 18 O 1.42901 * 109.47476 * 299.99822 * 16 15 5 19 19 C 1.50706 * 109.46890 * 180.02562 * 16 15 5 20 20 C 1.38244 * 119.98205 * 95.02524 * 19 16 15 21 21 C 1.38186 * 120.03839 * 179.97438 * 20 19 16 22 22 C 1.38491 * 119.99964 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.02073 * 179.97438 * 22 21 20 24 24 C 1.38416 * 119.96522 * 0.02562 * 22 21 20 25 25 C 1.38337 * 119.95991 * 359.97438 * 24 22 21 26 26 Cl 1.73602 * 120.00271 * 180.02562 * 25 24 22 27 27 H 1.09009 * 109.46680 * 299.99954 * 1 2 3 28 28 H 1.08996 * 109.47099 * 59.99995 * 1 2 3 29 29 H 1.08999 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46892 * 239.99624 * 2 1 3 31 31 H 1.08996 * 109.46885 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46882 * 300.00167 * 3 2 1 33 33 H 1.08998 * 109.47053 * 60.00026 * 3 2 1 34 34 H 1.08998 * 109.47238 * 57.03817 * 4 2 1 35 35 H 1.09003 * 109.47096 * 297.03962 * 4 2 1 36 36 H 1.09000 * 109.47239 * 280.45354 * 6 5 4 37 37 H 1.09003 * 109.46881 * 40.44774 * 6 5 4 38 38 H 0.96997 * 119.99220 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.47246 * 173.95073 * 15 5 4 40 40 H 1.08997 * 109.47158 * 53.95264 * 15 5 4 41 41 H 0.96696 * 113.99668 * 299.99972 * 18 16 15 42 42 H 1.07997 * 119.98065 * 359.97438 * 20 19 16 43 43 H 1.07993 * 119.99852 * 180.26880 * 21 20 19 44 44 H 1.07991 * 120.02429 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5073 -0.7835 1.2140 6 6 3.9694 -1.7411 0.2003 7 6 5.4050 -1.4472 -0.1509 8 1 5.9459 -0.6805 0.3842 9 6 6.0284 -2.1568 -1.1553 10 7 5.3696 -3.0900 -1.8073 11 14 7.8077 -1.7920 -1.5911 12 1 8.7034 -2.6468 -0.7710 13 1 8.0332 -2.0770 -3.0310 14 1 8.1012 -0.3622 -1.3176 15 6 4.0521 -1.1141 2.5376 16 6 3.7597 0.0304 3.5098 17 1 2.6820 0.1757 3.5865 18 8 4.3692 1.2306 3.0301 19 6 4.3192 -0.3084 4.8675 20 6 5.5741 0.1442 5.2302 21 6 6.0880 -0.1654 6.4750 22 6 5.3456 -0.9291 7.3603 23 9 5.8479 -1.2325 8.5772 24 6 4.0892 -1.3823 6.9972 25 6 3.5762 -1.0714 5.7507 26 17 2.0002 -1.6387 5.2944 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6340 -1.7324 1.2762 35 1 1.7207 -0.1777 2.1384 36 1 3.8920 -2.7540 0.5954 37 1 3.3511 -1.6513 -0.6929 38 1 5.8080 -3.5890 -2.5141 39 1 5.1297 -1.2594 2.4610 40 1 3.5872 -2.0295 2.9036 41 1 5.3300 1.1737 2.9371 42 1 6.1531 0.7400 4.5402 43 1 7.0666 0.1921 6.7593 44 1 3.5096 -1.9782 7.6866 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774581680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:31 Heat of formation + Delta-G solvation = -84.068019 kcal Electronic energy + Delta-G solvation = -26599.510180 eV Core-core repulsion = 22684.825702 eV Total energy + Delta-G solvation = -3914.684478 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.16448 -39.91902 -37.81162 -36.68630 -36.12300 -33.87786 -32.43249 -31.34171 -31.19441 -28.10365 -26.95906 -26.54068 -24.66778 -23.33302 -23.10466 -21.37666 -20.73538 -18.98682 -18.25461 -17.00410 -16.97630 -16.37945 -15.88709 -15.48319 -15.07529 -14.91361 -14.73791 -14.49798 -14.21953 -13.86531 -13.67788 -13.46739 -13.30904 -13.11683 -12.53388 -12.45994 -12.09950 -11.80785 -11.71541 -11.58199 -11.52591 -11.41568 -11.17515 -11.09655 -10.79978 -10.75571 -10.61749 -10.34455 -10.16244 -10.08187 -9.94323 -9.53876 -9.22850 -9.18697 -8.70849 -8.40639 -7.18835 -6.01956 -4.02812 0.73555 0.82762 1.84058 3.16620 3.30116 3.37324 3.40398 3.96322 4.35162 4.41374 4.45254 4.57630 4.65342 4.97154 5.07354 5.23953 5.32024 5.33823 5.45177 5.47779 5.55295 5.64970 5.66406 5.80154 5.86987 5.95142 5.99562 6.13311 6.18261 6.26196 6.33944 6.37288 6.45159 6.47769 6.57926 6.65175 6.95886 7.13093 7.24325 7.35259 7.80006 7.89309 8.14262 8.21563 8.55305 9.04055 9.60951 11.08605 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.004401 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.184492 B = 6360.660701 C = 8126.038192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.129 4.129 4 C 0.061 3.939 5 N -0.518 5.518 6 C 0.191 3.809 7 C -0.500 4.500 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.283 1.283 13 H -0.288 1.288 14 H -0.273 1.273 15 C 0.040 3.960 16 C 0.147 3.853 17 H 0.110 0.890 18 O -0.535 6.535 19 C -0.107 4.107 20 C -0.069 4.069 21 C -0.144 4.144 22 C 0.104 3.896 23 F -0.136 7.136 24 C -0.145 4.145 25 C -0.004 4.004 26 Cl -0.051 7.051 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.040 0.960 34 H 0.019 0.981 35 H 0.057 0.943 36 H -0.014 1.014 37 H 0.038 0.962 38 H 0.260 0.740 39 H 0.085 0.915 40 H 0.031 0.969 41 H 0.371 0.629 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.244 5.765 15.620 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.186 4.186 4 C -0.068 4.068 5 N -0.242 5.242 6 C 0.066 3.934 7 C -0.539 4.539 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.089 4.089 16 C 0.087 3.913 17 H 0.128 0.872 18 O -0.340 6.340 19 C -0.109 4.109 20 C -0.087 4.087 21 C -0.163 4.163 22 C 0.084 3.916 23 F -0.114 7.114 24 C -0.165 4.165 25 C -0.031 4.031 26 Cl -0.022 7.022 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.003 0.997 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.049 0.951 41 H 0.219 0.781 42 H 0.163 0.837 43 H 0.160 0.840 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.790 6.238 15.329 17.229 hybrid contribution 1.169 -1.272 0.199 1.739 sum -3.621 4.965 15.529 16.700 Atomic orbital electron populations 1.21828 0.96469 1.00931 1.00982 1.21084 0.93610 0.97436 0.98941 1.21617 1.03243 0.94544 0.99199 1.22100 0.89845 0.97400 0.97419 1.62031 1.05750 1.52318 1.04098 1.19795 0.96258 0.87795 0.89505 1.21122 0.96223 1.18840 1.17711 0.92022 1.24976 0.98109 0.95281 0.96248 1.69956 1.36720 1.23464 1.23734 0.86560 0.85035 0.78630 0.77541 1.20923 1.21347 1.19768 1.22575 1.01942 0.94238 0.90142 1.21000 0.97707 0.86446 0.86110 0.87211 1.86625 1.25222 1.34277 1.87876 1.20784 0.94839 0.97350 0.97945 1.20791 0.94017 0.98204 0.95716 1.21227 1.01153 0.99817 0.94062 1.17435 0.92916 0.99567 0.81647 1.91517 1.87164 1.91562 1.41165 1.20918 0.95529 1.03373 0.96677 1.20417 0.88713 0.99687 0.94285 1.98397 1.23975 1.87481 1.92312 0.93346 0.93057 0.93343 0.90611 0.90500 0.94616 0.94042 0.96303 0.92450 0.99652 0.94431 0.93009 0.89667 0.95119 0.78078 0.83658 0.83977 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.19 37.16 0.34 -1.68 16 2 C -0.09 -1.57 2.92 -90.62 -0.26 -1.83 16 3 C -0.13 -2.13 9.06 37.16 0.34 -1.80 16 4 C 0.06 1.08 4.24 -3.83 -0.02 1.06 16 5 N -0.52 -10.34 3.61 -236.08 -0.85 -11.19 16 6 C 0.19 4.75 4.59 -4.98 -0.02 4.73 16 7 C -0.50 -13.36 8.61 -34.44 -0.30 -13.66 16 8 H 0.06 1.61 7.65 -52.48 -0.40 1.21 16 9 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 10 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 11 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 15 C 0.04 0.70 4.43 -3.82 -0.02 0.69 16 16 C 0.15 2.13 2.63 -27.88 -0.07 2.05 16 17 H 0.11 1.64 5.26 -51.93 -0.27 1.37 16 18 O -0.54 -7.86 12.85 -35.23 -0.45 -8.32 16 19 C -0.11 -1.35 5.07 -104.58 -0.53 -1.88 16 20 C -0.07 -0.74 9.30 -39.60 -0.37 -1.11 16 21 C -0.14 -1.44 10.03 -39.51 -0.40 -1.83 16 22 C 0.10 1.14 7.30 -39.42 -0.29 0.85 16 23 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 24 C -0.15 -1.60 9.81 -39.48 -0.39 -1.99 16 25 C 0.00 -0.05 6.31 -39.50 -0.25 -0.30 16 26 Cl -0.05 -0.62 27.16 -51.86 -1.41 -2.03 16 27 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.50 6.47 -51.93 -0.34 1.16 16 31 H 0.08 1.47 7.69 -51.93 -0.40 1.07 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 35 H 0.06 0.94 5.94 -51.93 -0.31 0.63 16 36 H -0.01 -0.39 8.00 -51.93 -0.42 -0.80 16 37 H 0.04 1.01 6.22 -51.93 -0.32 0.69 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.08 1.61 7.31 -51.93 -0.38 1.23 16 40 H 0.03 0.55 7.88 -51.93 -0.41 0.14 16 41 H 0.37 4.51 7.32 45.56 0.33 4.84 16 42 H 0.15 1.27 6.40 -52.49 -0.34 0.94 16 43 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -29.25 373.31 -9.42 -38.67 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.76 Total: 3.38 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -2.33 Total: -15.29 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.12 Total: -36.64 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.45 Total: -8.32 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.41 Total: -2.03 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.25 -9.42 -38.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774581680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.395 kcal (2) G-P(sol) polarization free energy of solvation -29.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds