Wall clock time and date at job start Tue Mar 31 2020 15:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47133 * 2 1 4 4 C 1.53000 * 109.47166 * 119.99978 * 2 1 3 5 5 N 1.46893 * 109.47005 * 177.03899 * 4 2 1 6 6 C 1.46903 * 111.00166 * 287.91230 * 5 4 2 7 7 C 1.50693 * 109.47339 * 160.45063 * 6 5 4 8 8 H 1.08010 * 120.00069 * 4.70310 * 7 6 5 9 9 C 1.37878 * 120.00546 * 184.70478 * 7 6 5 10 10 N 1.31519 * 119.99277 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00321 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46801 * 90.00129 * 11 9 7 13 13 H 1.48507 * 109.47053 * 209.99933 * 11 9 7 14 14 H 1.48493 * 109.47223 * 330.00276 * 11 9 7 15 15 C 1.46908 * 110.99924 * 163.96048 * 5 4 2 16 16 C 1.52995 * 109.46914 * 293.95209 * 15 5 4 17 17 H 1.09005 * 109.47197 * 60.00355 * 16 15 5 18 18 O 1.42901 * 109.47476 * 299.99822 * 16 15 5 19 19 C 1.50706 * 109.46890 * 180.02562 * 16 15 5 20 20 C 1.38244 * 119.98205 * 95.02524 * 19 16 15 21 21 C 1.38186 * 120.03839 * 179.97438 * 20 19 16 22 22 C 1.38491 * 119.99964 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.02073 * 179.97438 * 22 21 20 24 24 C 1.38416 * 119.96522 * 0.02562 * 22 21 20 25 25 C 1.38337 * 119.95991 * 359.97438 * 24 22 21 26 26 Cl 1.73602 * 120.00271 * 180.02562 * 25 24 22 27 27 H 1.09009 * 109.46680 * 299.99954 * 1 2 3 28 28 H 1.08996 * 109.47099 * 59.99995 * 1 2 3 29 29 H 1.08999 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46892 * 239.99624 * 2 1 3 31 31 H 1.08996 * 109.46885 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46882 * 300.00167 * 3 2 1 33 33 H 1.08998 * 109.47053 * 60.00026 * 3 2 1 34 34 H 1.08998 * 109.47238 * 57.03817 * 4 2 1 35 35 H 1.09003 * 109.47096 * 297.03962 * 4 2 1 36 36 H 1.09000 * 109.47239 * 280.45354 * 6 5 4 37 37 H 1.09003 * 109.46881 * 40.44774 * 6 5 4 38 38 H 0.96997 * 119.99220 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.47246 * 173.95073 * 15 5 4 40 40 H 1.08997 * 109.47158 * 53.95264 * 15 5 4 41 41 H 0.96696 * 113.99668 * 299.99972 * 18 16 15 42 42 H 1.07997 * 119.98065 * 359.97438 * 20 19 16 43 43 H 1.07993 * 119.99852 * 180.26880 * 21 20 19 44 44 H 1.07991 * 120.02429 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5073 -0.7835 1.2140 6 6 3.9694 -1.7411 0.2003 7 6 5.4050 -1.4472 -0.1509 8 1 5.9459 -0.6805 0.3842 9 6 6.0284 -2.1568 -1.1553 10 7 5.3696 -3.0900 -1.8073 11 14 7.8077 -1.7920 -1.5911 12 1 8.7034 -2.6468 -0.7710 13 1 8.0332 -2.0770 -3.0310 14 1 8.1012 -0.3622 -1.3176 15 6 4.0521 -1.1141 2.5376 16 6 3.7597 0.0304 3.5098 17 1 2.6820 0.1757 3.5865 18 8 4.3692 1.2306 3.0301 19 6 4.3192 -0.3084 4.8675 20 6 5.5741 0.1442 5.2302 21 6 6.0880 -0.1654 6.4750 22 6 5.3456 -0.9291 7.3603 23 9 5.8479 -1.2325 8.5772 24 6 4.0892 -1.3823 6.9972 25 6 3.5762 -1.0714 5.7507 26 17 2.0002 -1.6387 5.2944 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6340 -1.7324 1.2762 35 1 1.7207 -0.1777 2.1384 36 1 3.8920 -2.7540 0.5954 37 1 3.3511 -1.6513 -0.6929 38 1 5.8080 -3.5890 -2.5141 39 1 5.1297 -1.2594 2.4610 40 1 3.5872 -2.0295 2.9036 41 1 5.3300 1.1737 2.9371 42 1 6.1531 0.7400 4.5402 43 1 7.0666 0.1921 6.7593 44 1 3.5096 -1.9782 7.6866 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774581680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:30 Heat of formation + Delta-G solvation = -100.858286 kcal Electronic energy + Delta-G solvation = -26600.238261 eV Core-core repulsion = 22684.825702 eV Total energy + Delta-G solvation = -3915.412559 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.02362 -40.92164 -39.18908 -37.66507 -37.30046 -35.48796 -34.31536 -32.42972 -32.04564 -29.72231 -28.49911 -27.81844 -26.13589 -24.70253 -24.16964 -22.70681 -22.05401 -20.48112 -19.15534 -18.56126 -17.95490 -17.90627 -16.86057 -16.74261 -16.41339 -16.25497 -16.09195 -15.89300 -15.33925 -15.13439 -14.90245 -14.58492 -14.41876 -14.27278 -14.11805 -13.77415 -13.67092 -13.23711 -13.03187 -12.91819 -12.70956 -12.66636 -12.51328 -12.41511 -12.38963 -12.18531 -12.00587 -11.88091 -11.69376 -11.60678 -11.25632 -11.13429 -10.96282 -10.53077 -10.08631 -9.66630 -8.89013 -8.13730 -6.22608 -0.15646 -0.02478 0.92120 1.43396 1.45121 1.56000 2.28564 2.44020 3.04423 3.16840 3.23827 3.44301 3.60889 3.79374 3.85758 3.95638 4.07547 4.13561 4.18536 4.28998 4.41712 4.46061 4.67048 4.68459 4.72231 4.80770 4.84178 4.90638 4.94873 4.98366 5.03126 5.12424 5.16629 5.22956 5.27449 5.30688 5.39927 5.58257 5.62283 5.70088 5.76176 6.14517 6.43690 6.66784 6.86633 6.93434 7.46422 8.96892 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.004401 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.184492 B = 6360.660701 C = 8126.038192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 C -0.119 4.119 4 C 0.063 3.937 5 N -0.517 5.517 6 C 0.208 3.792 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.000 4.000 10 N -0.938 5.938 11 Si 0.964 3.036 12 H -0.275 1.275 13 H -0.289 1.289 14 H -0.260 1.260 15 C 0.043 3.957 16 C 0.166 3.834 17 H 0.106 0.894 18 O -0.544 6.544 19 C -0.123 4.123 20 C -0.069 4.069 21 C -0.137 4.137 22 C 0.100 3.900 23 F -0.136 7.136 24 C -0.147 4.147 25 C -0.013 4.013 26 Cl -0.057 7.057 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.007 0.993 35 H 0.079 0.921 36 H -0.048 1.048 37 H 0.010 0.990 38 H 0.261 0.739 39 H 0.070 0.930 40 H 0.023 0.977 41 H 0.382 0.618 42 H 0.166 0.834 43 H 0.169 0.831 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 7.399 17.064 18.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 C -0.177 4.177 4 C -0.065 4.065 5 N -0.240 5.240 6 C 0.082 3.918 7 C -0.546 4.546 8 H 0.085 0.915 9 C -0.197 4.197 10 N -0.579 5.579 11 Si 0.789 3.211 12 H -0.201 1.201 13 H -0.215 1.215 14 H -0.184 1.184 15 C -0.086 4.086 16 C 0.106 3.894 17 H 0.124 0.876 18 O -0.351 6.351 19 C -0.125 4.125 20 C -0.087 4.087 21 C -0.155 4.155 22 C 0.081 3.919 23 F -0.115 7.115 24 C -0.167 4.167 25 C -0.040 4.040 26 Cl -0.028 7.028 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.026 0.974 35 H 0.097 0.903 36 H -0.031 1.031 37 H 0.028 0.972 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.041 0.959 41 H 0.232 0.768 42 H 0.183 0.817 43 H 0.187 0.813 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.969 7.890 16.799 18.979 hybrid contribution 0.900 -1.791 -0.184 2.013 sum -3.068 6.098 16.616 17.963 Atomic orbital electron populations 1.21758 0.93679 1.01493 1.02537 1.21078 0.95976 0.97300 0.96854 1.21507 1.01265 0.94282 1.00611 1.22172 0.88325 0.97233 0.98819 1.61982 1.07308 1.50224 1.04483 1.19415 0.95519 0.87089 0.89754 1.21443 0.97017 1.18607 1.17572 0.91465 1.25874 1.02645 0.95015 0.96203 1.70102 1.38702 1.24694 1.24432 0.85458 0.79543 0.79058 0.77019 1.20085 1.21450 1.18438 1.22585 1.00710 0.95692 0.89584 1.20645 0.97675 0.84868 0.86261 0.87630 1.86595 1.26361 1.34098 1.87999 1.20647 0.95970 0.98795 0.97059 1.21046 0.93318 0.97890 0.96397 1.21505 1.01989 0.98748 0.93281 1.17589 0.92970 0.99603 0.81760 1.91520 1.87129 1.91580 1.41251 1.21063 0.95843 1.03318 0.96436 1.20503 0.88642 1.00068 0.94827 1.98392 1.24441 1.87589 1.92407 0.91469 0.91778 0.93351 0.94201 0.93391 0.93270 0.92486 0.97446 0.90313 1.03063 0.97229 0.93028 0.91162 0.95865 0.76786 0.81700 0.81333 0.82364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.19 71.98 0.66 -3.00 16 2 C -0.09 -3.20 2.92 -10.79 -0.03 -3.23 16 3 C -0.12 -3.86 9.06 71.98 0.65 -3.21 16 4 C 0.06 2.25 4.24 86.30 0.37 2.62 16 5 N -0.52 -21.16 3.61 -900.81 -3.25 -24.42 16 6 C 0.21 10.85 4.59 85.55 0.39 11.25 16 7 C -0.51 -27.72 8.61 25.60 0.22 -27.50 16 8 H 0.07 3.52 7.65 -2.91 -0.02 3.49 16 9 C 0.00 0.00 5.46 84.65 0.46 0.46 16 10 N -0.94 -56.24 13.29 21.45 0.28 -55.96 16 11 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 14 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 15 C 0.04 1.53 4.43 86.30 0.38 1.91 16 16 C 0.17 4.64 2.63 29.85 0.08 4.72 16 17 H 0.11 3.04 5.26 -2.38 -0.01 3.03 16 18 O -0.54 -15.18 12.85 -148.98 -1.91 -17.10 16 19 C -0.12 -2.93 5.07 -19.83 -0.10 -3.03 16 20 C -0.07 -1.31 9.30 22.26 0.21 -1.11 16 21 C -0.14 -2.35 10.03 22.32 0.22 -2.13 16 22 C 0.10 1.97 7.30 22.37 0.16 2.13 16 23 F -0.14 -2.74 17.27 44.97 0.78 -1.96 16 24 C -0.15 -3.01 9.81 22.34 0.22 -2.79 16 25 C -0.01 -0.31 6.31 22.32 0.14 -0.17 16 26 Cl -0.06 -1.37 27.16 -2.72 -0.07 -1.44 16 27 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.65 6.47 -2.39 -0.02 1.63 16 31 H 0.05 1.82 7.69 -2.39 -0.02 1.80 16 32 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.01 0.28 8.05 -2.39 -0.02 0.26 16 35 H 0.08 2.50 5.94 -2.39 -0.01 2.49 16 36 H -0.05 -2.78 8.00 -2.39 -0.02 -2.80 16 37 H 0.01 0.55 6.22 -2.39 -0.01 0.54 16 38 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.07 2.69 7.31 -2.39 -0.02 2.67 16 40 H 0.02 0.86 7.88 -2.39 -0.02 0.84 16 41 H 0.38 8.62 7.32 -74.06 -0.54 8.08 16 42 H 0.17 2.42 6.40 -2.91 -0.02 2.40 16 43 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.16 2.69 8.06 -2.92 -0.02 2.67 16 Total: -1.00 -64.33 373.31 2.36 -61.97 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.47 Total: 16.56 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 4.04 Total: -23.07 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.97 Total: -80.38 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -1.91 Total: -17.10 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.07 Total: -1.44 kcal Total: -64.33 2.36 -61.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774581680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.885 kcal (2) G-P(sol) polarization free energy of solvation -64.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds