Wall clock time and date at job start Tue Mar 31 2020 15:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47089 * 2 1 4 4 C 1.53006 * 109.46600 * 119.99634 * 2 1 3 5 5 N 1.46892 * 109.47466 * 62.90914 * 4 2 1 6 6 C 1.46901 * 111.00402 * 195.84218 * 5 4 2 7 7 C 1.50694 * 109.47090 * 66.04259 * 6 5 4 8 8 H 1.08003 * 120.00251 * 0.02562 * 7 6 5 9 9 C 1.37884 * 120.00233 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99348 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00150 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47123 * 90.00124 * 11 9 7 13 13 H 1.48504 * 109.47177 * 210.00037 * 11 9 7 14 14 H 1.48501 * 109.47183 * 329.99918 * 11 9 7 15 15 C 1.46904 * 111.00167 * 71.88474 * 5 4 2 16 16 C 1.53000 * 109.47384 * 199.56720 * 15 5 4 17 17 H 1.09000 * 109.46759 * 303.09081 * 16 15 5 18 18 O 1.42898 * 109.47231 * 63.09057 * 16 15 5 19 19 C 1.50697 * 109.47057 * 183.09243 * 16 15 5 20 20 C 1.38248 * 119.97904 * 265.00197 * 19 16 15 21 21 C 1.38188 * 120.03646 * 180.02562 * 20 19 16 22 22 C 1.38489 * 119.99990 * 359.94865 * 21 20 19 23 23 F 1.35100 * 120.01458 * 179.97438 * 22 21 20 24 24 C 1.38412 * 119.96165 * 0.02779 * 22 21 20 25 25 C 1.38329 * 119.96226 * 359.76502 * 24 22 21 26 26 Cl 1.73609 * 120.00060 * 180.25740 * 25 24 22 27 27 H 1.08999 * 109.47050 * 60.00543 * 1 2 3 28 28 H 1.08993 * 109.47280 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47512 * 300.00587 * 1 2 3 30 30 H 1.08997 * 109.47065 * 239.99336 * 2 1 3 31 31 H 1.09004 * 109.46957 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46946 * 299.99148 * 3 2 1 33 33 H 1.08997 * 109.47709 * 59.99731 * 3 2 1 34 34 H 1.08999 * 109.47058 * 302.90557 * 4 2 1 35 35 H 1.09000 * 109.46772 * 182.91153 * 4 2 1 36 36 H 1.08997 * 109.47480 * 186.04569 * 6 5 4 37 37 H 1.09000 * 109.46421 * 306.04379 * 6 5 4 38 38 H 0.97005 * 119.99999 * 179.97438 * 10 9 7 39 39 H 1.09001 * 109.46771 * 319.57125 * 15 5 4 40 40 H 1.08999 * 109.46645 * 79.56362 * 15 5 4 41 41 H 0.96705 * 114.00077 * 53.59401 * 18 16 15 42 42 H 1.07994 * 119.98426 * 359.97338 * 20 19 16 43 43 H 1.08000 * 119.99758 * 179.97438 * 21 20 19 44 44 H 1.08004 * 120.01420 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6085 -2.1249 1.2149 6 6 1.7429 -2.7498 2.5376 7 6 0.7801 -2.1023 3.4992 8 1 0.1327 -1.3065 3.1615 9 6 0.7257 -2.5258 4.8102 10 7 1.5143 -3.4944 5.2215 11 14 -0.4683 -1.7237 6.0020 12 1 -1.7615 -2.4529 5.9730 13 1 0.0959 -1.7709 7.3749 14 1 -0.6884 -0.3096 5.6057 15 6 2.3529 -2.8797 0.1979 16 6 1.5833 -4.1536 -0.1568 17 1 1.4168 -4.7408 0.7463 18 8 0.3249 -3.8040 -0.7366 19 6 2.3828 -4.9651 -1.1433 20 6 2.1424 -4.8371 -2.4987 21 6 2.8744 -5.5811 -3.4044 22 6 3.8502 -6.4548 -2.9545 23 9 4.5657 -7.1827 -3.8396 24 6 4.0912 -6.5826 -1.5975 25 6 3.3604 -5.8339 -0.6925 26 17 3.6665 -5.9884 1.0094 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6346 -0.2383 2.1385 35 1 3.1286 -0.6762 1.2759 36 1 1.5197 -3.8139 2.4612 37 1 2.7624 -2.6175 2.8998 38 1 1.4764 -3.7922 6.1440 39 1 2.4717 -2.2663 -0.6952 40 1 3.3349 -3.1455 0.5894 41 1 0.3925 -3.1992 -1.4882 42 1 1.3815 -4.1559 -2.8499 43 1 2.6858 -5.4809 -4.4630 44 1 4.8517 -7.2640 -1.2457 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774581683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:34 Heat of formation + Delta-G solvation = -103.250592 kcal Electronic energy + Delta-G solvation = -26608.521187 eV Core-core repulsion = 22693.004890 eV Total energy + Delta-G solvation = -3915.516297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.130 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -50.01477 -40.90020 -39.18094 -37.63586 -37.30436 -35.51827 -34.29432 -32.42986 -32.03248 -29.72074 -28.47436 -27.78650 -26.02872 -24.83295 -24.13482 -22.69014 -21.94698 -20.56812 -19.08369 -18.56192 -17.93431 -17.82815 -17.00820 -16.72943 -16.59471 -16.09831 -15.91030 -15.68585 -15.46855 -15.18222 -14.98386 -14.47848 -14.38524 -14.32241 -14.14988 -13.78632 -13.56306 -13.24015 -12.94956 -12.89061 -12.76551 -12.59432 -12.53933 -12.45288 -12.37110 -12.25322 -11.97642 -11.85058 -11.65837 -11.49866 -11.36239 -11.05985 -10.93616 -10.56495 -10.07938 -9.67161 -8.88507 -8.16468 -6.24393 -0.14608 -0.01729 0.99454 1.40288 1.41847 1.51992 2.30014 2.41794 3.05158 3.16254 3.21919 3.43720 3.62914 3.81453 3.88822 4.01276 4.09212 4.14359 4.24397 4.29786 4.40734 4.48181 4.61500 4.73382 4.80177 4.84473 4.86391 4.94293 4.98442 5.00945 5.05261 5.17631 5.23570 5.26999 5.33188 5.35156 5.41558 5.61803 5.64442 5.70210 5.76963 6.12361 6.41659 6.68904 6.91975 6.96292 7.44376 8.94363 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.004063 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.877656 B = 6889.514616 C = 8453.808056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.082 4.082 3 C -0.142 4.142 4 C 0.066 3.934 5 N -0.519 5.519 6 C 0.215 3.785 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.003 3.997 10 N -0.934 5.934 11 Si 0.961 3.039 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.264 1.264 15 C 0.033 3.967 16 C 0.164 3.836 17 H 0.079 0.921 18 O -0.544 6.544 19 C -0.121 4.121 20 C -0.061 4.061 21 C -0.133 4.133 22 C 0.101 3.899 23 F -0.136 7.136 24 C -0.150 4.150 25 C -0.021 4.021 26 Cl -0.066 7.066 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.011 0.989 36 H 0.006 0.994 37 H -0.048 1.048 38 H 0.261 0.739 39 H 0.099 0.901 40 H 0.021 0.979 41 H 0.383 0.617 42 H 0.175 0.825 43 H 0.176 0.824 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.513 0.176 -20.358 20.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.100 4.100 3 C -0.200 4.200 4 C -0.062 4.062 5 N -0.243 5.243 6 C 0.089 3.911 7 C -0.552 4.552 8 H 0.081 0.919 9 C -0.195 4.195 10 N -0.575 5.575 11 Si 0.786 3.214 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.188 1.188 15 C -0.095 4.095 16 C 0.103 3.897 17 H 0.097 0.903 18 O -0.350 6.350 19 C -0.123 4.123 20 C -0.079 4.079 21 C -0.151 4.151 22 C 0.082 3.918 23 F -0.114 7.114 24 C -0.170 4.170 25 C -0.048 4.048 26 Cl -0.037 7.037 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.029 0.971 36 H 0.024 0.976 37 H -0.031 1.031 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.039 0.961 41 H 0.233 0.767 42 H 0.192 0.808 43 H 0.193 0.807 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.893 -0.352 -19.737 19.951 hybrid contribution 1.143 -0.035 1.420 1.823 sum 4.037 -0.387 -18.317 18.761 Atomic orbital electron populations 1.21619 0.94605 1.02030 1.00382 1.21083 0.96717 0.95701 0.96522 1.21788 1.00713 0.95345 1.02112 1.22110 0.95696 0.89061 0.99311 1.61950 1.54695 1.01683 1.05945 1.19300 0.92625 0.93895 0.85324 1.21460 1.20516 1.18923 0.94314 0.91947 1.25826 0.97691 0.95775 1.00214 1.70093 1.40372 1.29716 1.17325 0.85510 0.78905 0.79220 0.77772 1.20119 1.21046 1.18788 1.22748 0.94448 0.95219 0.97115 1.20478 0.83126 0.93197 0.92849 0.90349 1.86690 1.28014 1.68652 1.51692 1.20642 0.96763 0.98078 0.96790 1.21067 0.98724 0.98578 0.89506 1.21545 0.94868 0.95739 1.02956 1.17580 0.93967 0.94357 0.85905 1.91521 1.76712 1.75756 1.67441 1.21040 1.02409 1.02124 0.91381 1.20658 0.98913 0.99716 0.85543 1.98454 1.94916 1.97063 1.13238 0.91624 0.92516 0.95081 0.90358 0.92861 0.90733 0.93640 0.92647 0.97101 0.97593 1.03052 0.93008 0.88322 0.96051 0.76742 0.80798 0.80673 0.82928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 9.06 71.98 0.65 -2.90 16 2 C -0.08 -2.19 2.92 -10.79 -0.03 -2.22 16 3 C -0.14 -3.20 9.19 71.98 0.66 -2.54 16 4 C 0.07 2.45 4.21 86.31 0.36 2.81 16 5 N -0.52 -21.13 3.67 -900.81 -3.30 -24.43 16 6 C 0.21 11.37 4.55 85.55 0.39 11.76 16 7 C -0.51 -29.19 8.28 25.60 0.21 -28.98 16 8 H 0.06 3.49 7.25 -2.91 -0.02 3.47 16 9 C 0.00 0.15 5.46 84.66 0.46 0.61 16 10 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 11 Si 0.96 45.16 29.54 68.60 2.03 47.18 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 15 C 0.03 1.10 4.40 86.30 0.38 1.48 16 16 C 0.16 5.19 2.79 29.85 0.08 5.27 16 17 H 0.08 3.21 5.69 -2.39 -0.01 3.19 16 18 O -0.54 -15.81 12.78 -148.98 -1.90 -17.71 16 19 C -0.12 -3.07 5.07 -19.84 -0.10 -3.17 16 20 C -0.06 -1.05 9.31 22.26 0.21 -0.85 16 21 C -0.13 -2.04 10.03 22.32 0.22 -1.81 16 22 C 0.10 1.99 7.30 22.37 0.16 2.15 16 23 F -0.14 -2.69 17.27 44.97 0.78 -1.91 16 24 C -0.15 -3.40 9.81 22.33 0.22 -3.18 16 25 C -0.02 -0.58 6.31 22.32 0.14 -0.44 16 26 Cl -0.07 -2.18 27.15 -2.72 -0.07 -2.25 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.78 7.69 -2.39 -0.02 1.76 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.80 6.46 -2.39 -0.02 1.78 16 31 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 2.39 6.59 -2.39 -0.02 2.37 16 35 H 0.01 0.40 8.05 -2.39 -0.02 0.38 16 36 H 0.01 0.35 6.58 -2.39 -0.02 0.33 16 37 H -0.05 -2.83 8.12 -2.39 -0.02 -2.85 16 38 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 39 H 0.10 2.55 6.21 -2.39 -0.01 2.54 16 40 H 0.02 0.78 7.74 -2.39 -0.02 0.76 16 41 H 0.38 7.18 7.61 -74.05 -0.56 6.62 16 42 H 0.17 1.86 6.56 -2.91 -0.02 1.85 16 43 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 44 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -68.81 373.40 2.29 -66.52 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.45 Total: 11.46 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 4.03 Total: -22.00 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -3.02 Total: -81.29 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -1.90 Total: -17.71 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.91 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -0.07 Total: -2.25 kcal Total: -68.81 2.29 -66.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774581683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.731 kcal (2) G-P(sol) polarization free energy of solvation -68.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds