Wall clock time and date at job start Tue Mar 31 2020 15:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47248 * 2 1 4 4 C 1.52995 * 109.47347 * 120.00397 * 2 1 3 5 5 C 1.47193 * 109.47457 * 185.00184 * 4 2 1 6 6 N 3.43548 * 154.82562 * 111.57100 * 2 1 3 7 7 S 1.81398 * 109.47176 * 240.00492 * 2 1 3 8 8 C 1.76206 * 103.00206 * 70.19071 * 7 2 1 9 9 C 1.38728 * 120.09907 * 6.03438 * 8 7 2 10 10 C 1.38244 * 119.99516 * 179.79089 * 9 8 7 11 11 C 1.38271 * 120.19205 * 0.49393 * 10 9 8 12 12 C 1.38285 * 120.20807 * 359.73429 * 11 10 9 13 13 C 1.38641 * 119.99970 * 0.03103 * 12 11 10 14 14 N 1.40007 * 120.09589 * 179.97438 * 13 12 11 15 15 C 1.46500 * 120.00105 * 359.97438 * 14 13 12 16 16 C 1.52998 * 109.47203 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.46956 * 304.99361 * 16 15 14 18 18 C 1.47203 * 109.47627 * 64.99980 * 16 15 14 19 19 N 6.93076 * 89.55787 * 225.34188 * 2 1 3 20 20 C 1.53002 * 109.47296 * 185.00064 * 16 15 14 21 21 C 1.50696 * 109.47442 * 174.99892 * 20 16 15 22 22 H 1.08000 * 120.00034 * 359.97438 * 21 20 16 23 23 C 1.37883 * 120.00268 * 180.02562 * 21 20 16 24 24 N 1.31508 * 120.00046 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99754 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47028 * 90.00251 * 25 23 21 27 27 H 1.48500 * 109.46986 * 210.00159 * 25 23 21 28 28 H 1.48506 * 109.47108 * 330.00245 * 25 23 21 29 29 H 1.09009 * 109.47385 * 65.72151 * 1 2 3 30 30 H 1.09000 * 109.47302 * 185.71533 * 1 2 3 31 31 H 1.08997 * 109.47420 * 305.72365 * 1 2 3 32 32 H 1.08997 * 109.47160 * 305.00519 * 4 2 1 33 33 H 1.09002 * 109.47275 * 65.00051 * 4 2 1 34 34 H 1.08004 * 120.00353 * 0.02562 * 9 8 7 35 35 H 1.07999 * 119.90685 * 180.25116 * 10 9 8 36 36 H 1.08003 * 119.89713 * 179.76628 * 11 10 9 37 37 H 1.07999 * 120.00272 * 180.02562 * 12 11 10 38 38 H 0.97004 * 120.00123 * 179.97438 * 14 13 12 39 39 H 1.09004 * 109.46827 * 299.99836 * 15 14 13 40 40 H 1.09000 * 109.47169 * 59.99626 * 15 14 13 41 41 H 1.08999 * 109.46877 * 295.00226 * 20 16 15 42 42 H 1.08996 * 109.47229 * 54.99565 * 20 16 15 43 43 H 0.96998 * 120.00049 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5069 -0.6174 1.3112 6 7 4.6391 -0.5373 1.3590 7 16 2.1346 -0.8550 -1.4812 8 6 1.7182 0.2601 -2.7804 9 6 1.1922 1.5090 -2.4834 10 6 0.8703 2.3839 -3.5043 11 6 1.0614 2.0143 -4.8229 12 6 1.5807 0.7697 -5.1284 13 6 1.9110 -0.1124 -4.1110 14 7 2.4364 -1.3733 -4.4180 15 6 2.6375 -1.7625 -5.8160 16 6 3.2177 -3.1770 -5.8732 17 1 4.1276 -3.2210 -5.2747 18 6 2.2333 -4.1332 -5.3405 19 7 1.4764 -4.8713 -4.9298 20 6 3.5439 -3.5362 -7.3242 21 6 4.2276 -4.8784 -7.3680 22 1 4.4116 -5.4209 -6.4524 23 6 4.6194 -5.4135 -8.5769 24 7 5.2166 -6.5846 -8.6150 25 14 4.3020 -4.4749 -10.1605 26 1 5.4620 -3.5960 -10.4559 27 1 4.1126 -5.4364 -11.2763 28 1 3.0791 -3.6462 -10.0081 29 1 -0.3634 0.4226 -0.9368 30 1 -0.3634 -1.0225 0.1023 31 1 -0.3634 0.6000 0.8343 32 1 1.6053 -0.2619 2.1369 33 1 1.7516 -1.7716 1.2054 34 1 1.0378 1.7993 -1.4547 35 1 0.4647 3.3574 -3.2713 36 1 0.8048 2.7001 -5.6168 37 1 1.7290 0.4846 -6.1595 38 1 2.6674 -1.9892 -3.7051 39 1 1.6820 -1.7406 -6.3402 40 1 3.3286 -1.0664 -6.2912 41 1 2.6219 -3.5790 -7.9040 42 1 4.2037 -2.7784 -7.7466 43 1 5.4918 -6.9612 -9.4654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583867355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:04 Heat of formation + Delta-G solvation = 67.835402 kcal Electronic energy + Delta-G solvation = -24081.432614 eV Core-core repulsion = 20638.440845 eV Total energy + Delta-G solvation = -3442.991769 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.51917 -37.51959 -37.30369 -35.35796 -34.87530 -33.67206 -32.01303 -31.24051 -29.33336 -28.69083 -26.87684 -24.17652 -23.12460 -22.51091 -21.69614 -21.27516 -18.50462 -17.72006 -17.13216 -17.12346 -16.97995 -16.42025 -15.77929 -14.92868 -14.71684 -14.48321 -14.22201 -14.19816 -13.91613 -13.80431 -13.55571 -13.38688 -13.20677 -12.94328 -12.63154 -12.58069 -12.50476 -12.30336 -12.22358 -12.11765 -11.75464 -11.71799 -11.57739 -11.34475 -11.08309 -10.91266 -10.52720 -10.24724 -10.18360 -10.10609 -9.87862 -9.72487 -9.41606 -8.67348 -8.05819 -7.11001 -6.16106 -4.17928 1.14350 1.23072 1.50961 2.17106 2.43565 2.52854 3.22142 3.30948 3.30984 3.35454 3.46249 3.52733 3.55289 3.70984 4.14952 4.33123 4.39380 4.54425 4.60556 4.70465 4.88585 4.93372 5.04012 5.08729 5.18123 5.19040 5.20753 5.30527 5.36539 5.44117 5.53400 5.69749 5.74163 5.78168 6.01567 6.06562 6.13663 6.20584 6.48581 6.70336 6.81130 7.00512 7.21212 7.27372 7.55419 7.64461 8.25140 8.35085 8.86330 9.42812 10.96832 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.002922 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.771622 B = 9580.909956 C =10804.571312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.075 4.075 3 H 0.101 0.899 4 C -0.005 4.005 5 C 0.198 3.802 6 N -0.418 5.418 7 S -0.119 6.119 8 C -0.163 4.163 9 C -0.086 4.086 10 C -0.169 4.169 11 C -0.071 4.071 12 C -0.184 4.184 13 C 0.247 3.753 14 N -0.739 5.739 15 C 0.127 3.873 16 C 0.007 3.993 17 H 0.113 0.887 18 C 0.234 3.766 19 N -0.454 5.454 20 C -0.001 4.001 21 C -0.532 4.532 22 H 0.074 0.926 23 C 0.072 3.928 24 N -0.895 5.895 25 Si 0.877 3.123 26 H -0.274 1.274 27 H -0.287 1.287 28 H -0.263 1.263 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.402 0.598 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.028 0.972 42 H 0.037 0.963 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.271 20.577 15.850 28.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.205 4.205 3 H 0.120 0.880 4 C -0.047 4.047 5 C -0.120 4.120 6 N -0.094 5.094 7 S 0.123 5.877 8 C -0.280 4.280 9 C -0.110 4.110 10 C -0.191 4.191 11 C -0.092 4.092 12 C -0.208 4.208 13 C 0.137 3.863 14 N -0.368 5.368 15 C 0.002 3.998 16 C -0.015 4.015 17 H 0.131 0.869 18 C -0.084 4.084 19 N -0.131 5.131 20 C -0.040 4.040 21 C -0.569 4.569 22 H 0.092 0.908 23 C -0.130 4.130 24 N -0.532 5.532 25 Si 0.704 3.296 26 H -0.199 1.199 27 H -0.212 1.212 28 H -0.188 1.188 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.147 0.853 38 H 0.238 0.762 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.046 0.954 42 H 0.055 0.945 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.030 18.251 16.253 26.417 hybrid contribution -0.675 1.485 -0.919 1.872 sum -10.705 19.736 15.333 27.188 Atomic orbital electron populations 1.22167 0.91275 1.04089 1.03505 1.23325 1.00235 1.02691 0.94279 0.88047 1.19105 0.82567 1.04517 0.98474 1.28897 0.95121 0.94130 0.93886 1.81252 1.12651 1.07759 1.07760 1.85472 1.75960 1.28430 0.97837 1.20951 1.13369 0.99202 0.94442 1.20875 0.98734 0.92043 0.99310 1.20742 1.05903 0.99858 0.92597 1.20940 0.96502 0.95380 0.96383 1.20664 1.07148 0.94807 0.98229 1.17353 0.92052 0.85902 0.90973 1.45047 1.69581 1.14327 1.07849 1.21608 1.01178 0.94903 0.82087 1.19206 0.93560 0.87290 1.01469 0.86930 1.28820 0.93504 0.93713 0.92331 1.80975 1.11596 1.09839 1.10648 1.19609 0.97805 0.98691 0.87933 1.20979 1.38820 1.01882 0.95250 0.90762 1.24985 0.94234 0.94721 0.99086 1.69897 1.39753 1.17177 1.26408 0.86818 0.79371 0.80084 0.83302 1.19934 1.21247 1.18787 0.90909 0.90634 0.91128 0.85647 0.86353 0.86091 0.86368 0.86025 0.85264 0.76189 0.91329 0.89954 0.95377 0.94491 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 8.71 37.15 0.32 -0.37 16 2 C -0.08 -0.45 2.01 -26.74 -0.05 -0.50 16 3 H 0.10 0.57 6.83 -51.92 -0.35 0.22 16 4 C -0.01 -0.02 5.19 -29.52 -0.15 -0.18 16 5 C 0.20 1.78 14.78 -20.76 -0.31 1.47 16 6 N -0.42 -5.30 18.54 42.15 0.78 -4.51 16 7 S -0.12 -1.24 19.23 -107.50 -2.07 -3.31 16 8 C -0.16 -1.86 5.98 -38.92 -0.23 -2.10 16 9 C -0.09 -0.82 8.04 -39.40 -0.32 -1.13 16 10 C -0.17 -1.54 10.04 -39.57 -0.40 -1.94 16 11 C -0.07 -0.69 10.04 -39.55 -0.40 -1.08 16 12 C -0.18 -2.07 9.31 -39.42 -0.37 -2.43 16 13 C 0.25 3.10 6.66 -83.50 -0.56 2.54 16 14 N -0.74 -9.80 5.47 -58.45 -0.32 -10.12 16 15 C 0.13 1.70 4.28 -4.04 -0.02 1.68 16 16 C 0.01 0.11 2.26 -93.41 -0.21 -0.10 16 17 H 0.11 1.83 8.14 -51.93 -0.42 1.40 16 18 C 0.23 4.59 13.45 -20.82 -0.28 4.31 16 19 N -0.45 -9.81 18.53 42.08 0.78 -9.03 16 20 C 0.00 -0.03 3.49 -27.88 -0.10 -0.13 16 21 C -0.53 -14.01 9.15 -34.44 -0.32 -14.33 16 22 H 0.07 2.16 7.84 -52.49 -0.41 1.75 16 23 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 24 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 25 Si 0.88 20.21 27.47 -169.99 -4.67 15.54 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 29 H 0.07 0.44 6.15 -51.92 -0.32 0.13 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.13 0.12 8.14 -51.93 -0.42 -0.31 16 33 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.12 0.87 5.00 -52.48 -0.26 0.61 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.13 1.32 6.74 -52.49 -0.35 0.97 16 38 H 0.40 5.57 6.76 -40.82 -0.28 5.30 16 39 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 40 H 0.08 0.96 7.95 -51.93 -0.41 0.55 16 41 H 0.03 0.58 7.20 -51.93 -0.37 0.21 16 42 H 0.04 0.70 7.57 -51.93 -0.39 0.31 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 377.93 15.07 5.70 5.70 Total: -1.00 -33.97 377.93 -8.20 -42.16 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.70 Total: 1.89 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -3.48 Total: -12.39 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 2.01 Total: -49.60 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal Atomic # 16 Polarization: -1.24 SS G_CDS: -2.07 Total: -3.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.97 -8.20 -42.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583867355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.999 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds