Wall clock time and date at job start Tue Mar 31 2020 15:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47248 * 2 1 4 4 C 1.52995 * 109.47347 * 120.00397 * 2 1 3 5 5 C 1.47193 * 109.47457 * 185.00184 * 4 2 1 6 6 N 3.43548 * 154.82562 * 111.57100 * 2 1 3 7 7 S 1.81398 * 109.47176 * 240.00492 * 2 1 3 8 8 C 1.76206 * 103.00206 * 70.19071 * 7 2 1 9 9 C 1.38728 * 120.09907 * 6.03438 * 8 7 2 10 10 C 1.38244 * 119.99516 * 179.79089 * 9 8 7 11 11 C 1.38271 * 120.19205 * 0.49393 * 10 9 8 12 12 C 1.38285 * 120.20807 * 359.73429 * 11 10 9 13 13 C 1.38641 * 119.99970 * 0.03103 * 12 11 10 14 14 N 1.40007 * 120.09589 * 179.97438 * 13 12 11 15 15 C 1.46500 * 120.00105 * 359.97438 * 14 13 12 16 16 C 1.52998 * 109.47203 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.46956 * 304.99361 * 16 15 14 18 18 C 1.47203 * 109.47627 * 64.99980 * 16 15 14 19 19 N 6.93076 * 89.55787 * 225.34188 * 2 1 3 20 20 C 1.53002 * 109.47296 * 185.00064 * 16 15 14 21 21 C 1.50696 * 109.47442 * 174.99892 * 20 16 15 22 22 H 1.08000 * 120.00034 * 359.97438 * 21 20 16 23 23 C 1.37883 * 120.00268 * 180.02562 * 21 20 16 24 24 N 1.31508 * 120.00046 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99754 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47028 * 90.00251 * 25 23 21 27 27 H 1.48500 * 109.46986 * 210.00159 * 25 23 21 28 28 H 1.48506 * 109.47108 * 330.00245 * 25 23 21 29 29 H 1.09009 * 109.47385 * 65.72151 * 1 2 3 30 30 H 1.09000 * 109.47302 * 185.71533 * 1 2 3 31 31 H 1.08997 * 109.47420 * 305.72365 * 1 2 3 32 32 H 1.08997 * 109.47160 * 305.00519 * 4 2 1 33 33 H 1.09002 * 109.47275 * 65.00051 * 4 2 1 34 34 H 1.08004 * 120.00353 * 0.02562 * 9 8 7 35 35 H 1.07999 * 119.90685 * 180.25116 * 10 9 8 36 36 H 1.08003 * 119.89713 * 179.76628 * 11 10 9 37 37 H 1.07999 * 120.00272 * 180.02562 * 12 11 10 38 38 H 0.97004 * 120.00123 * 179.97438 * 14 13 12 39 39 H 1.09004 * 109.46827 * 299.99836 * 15 14 13 40 40 H 1.09000 * 109.47169 * 59.99626 * 15 14 13 41 41 H 1.08999 * 109.46877 * 295.00226 * 20 16 15 42 42 H 1.08996 * 109.47229 * 54.99565 * 20 16 15 43 43 H 0.96998 * 120.00049 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5069 -0.6174 1.3112 6 7 4.6391 -0.5373 1.3590 7 16 2.1346 -0.8550 -1.4812 8 6 1.7182 0.2601 -2.7804 9 6 1.1922 1.5090 -2.4834 10 6 0.8703 2.3839 -3.5043 11 6 1.0614 2.0143 -4.8229 12 6 1.5807 0.7697 -5.1284 13 6 1.9110 -0.1124 -4.1110 14 7 2.4364 -1.3733 -4.4180 15 6 2.6375 -1.7625 -5.8160 16 6 3.2177 -3.1770 -5.8732 17 1 4.1276 -3.2210 -5.2747 18 6 2.2333 -4.1332 -5.3405 19 7 1.4764 -4.8713 -4.9298 20 6 3.5439 -3.5362 -7.3242 21 6 4.2276 -4.8784 -7.3680 22 1 4.4116 -5.4209 -6.4524 23 6 4.6194 -5.4135 -8.5769 24 7 5.2166 -6.5846 -8.6150 25 14 4.3020 -4.4749 -10.1605 26 1 5.4620 -3.5960 -10.4559 27 1 4.1126 -5.4364 -11.2763 28 1 3.0791 -3.6462 -10.0081 29 1 -0.3634 0.4226 -0.9368 30 1 -0.3634 -1.0225 0.1023 31 1 -0.3634 0.6000 0.8343 32 1 1.6053 -0.2619 2.1369 33 1 1.7516 -1.7716 1.2054 34 1 1.0378 1.7993 -1.4547 35 1 0.4647 3.3574 -3.2713 36 1 0.8048 2.7001 -5.6168 37 1 1.7290 0.4846 -6.1595 38 1 2.6674 -1.9892 -3.7051 39 1 1.6820 -1.7406 -6.3402 40 1 3.3286 -1.0664 -6.2912 41 1 2.6219 -3.5790 -7.9040 42 1 4.2037 -2.7784 -7.7466 43 1 5.4918 -6.9612 -9.4654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583867355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:03 Heat of formation + Delta-G solvation = 47.871369 kcal Electronic energy + Delta-G solvation = -24082.298320 eV Core-core repulsion = 20638.440845 eV Total energy + Delta-G solvation = -3443.857475 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.34215 -38.71030 -38.10749 -36.51607 -35.63617 -35.27703 -33.69769 -31.97455 -30.49298 -29.13095 -28.27912 -25.32618 -23.83793 -23.40458 -23.10857 -22.17115 -19.25360 -18.96216 -18.60272 -18.21022 -17.73370 -17.30300 -16.76960 -16.18845 -15.63608 -15.43049 -15.30005 -15.03708 -14.89889 -14.74888 -14.58111 -14.54664 -14.33177 -14.04803 -13.99309 -13.72453 -13.48599 -13.24046 -13.15890 -12.96759 -12.82663 -12.64204 -12.57969 -12.31814 -12.21872 -12.18003 -11.76660 -11.70933 -11.64985 -11.37841 -11.00908 -10.83871 -10.74818 -10.48486 -8.85439 -8.26561 -7.93360 -6.33212 0.42071 0.58773 0.74182 1.42827 1.45484 1.50774 1.55685 1.76075 1.85734 1.86371 1.90314 2.39998 2.47830 2.95491 3.00377 3.06356 3.13735 3.70683 3.82544 3.94128 4.03526 4.18778 4.22111 4.29028 4.46695 4.57213 4.58977 4.63151 4.72915 4.74831 4.76662 4.84625 4.89666 4.99118 5.05793 5.16390 5.30155 5.37544 5.39268 5.49699 5.59926 5.75529 5.97008 6.21341 6.36159 6.62032 6.63484 6.70585 6.76500 7.31461 8.90393 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.002922 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.771622 B = 9580.909956 C =10804.571312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.057 4.057 3 H 0.108 0.892 4 C -0.004 4.004 5 C 0.225 3.775 6 N -0.493 5.493 7 S -0.184 6.184 8 C -0.170 4.170 9 C -0.089 4.089 10 C -0.168 4.168 11 C -0.076 4.076 12 C -0.196 4.196 13 C 0.219 3.781 14 N -0.748 5.748 15 C 0.140 3.860 16 C 0.014 3.986 17 H 0.117 0.883 18 C 0.245 3.755 19 N -0.495 5.495 20 C 0.001 3.999 21 C -0.534 4.534 22 H 0.027 0.973 23 C 0.003 3.997 24 N -0.954 5.954 25 Si 0.950 3.050 26 H -0.257 1.257 27 H -0.296 1.296 28 H -0.232 1.232 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.176 0.824 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.136 0.864 38 H 0.395 0.605 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.034 0.966 42 H 0.067 0.933 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.394 24.466 16.057 32.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 H 0.126 0.874 4 C -0.045 4.045 5 C -0.092 4.092 6 N -0.171 5.171 7 S 0.057 5.943 8 C -0.286 4.286 9 C -0.112 4.112 10 C -0.190 4.190 11 C -0.097 4.097 12 C -0.220 4.220 13 C 0.111 3.889 14 N -0.378 5.378 15 C 0.015 3.985 16 C -0.008 4.008 17 H 0.134 0.866 18 C -0.072 4.072 19 N -0.172 5.172 20 C -0.038 4.038 21 C -0.572 4.572 22 H 0.045 0.955 23 C -0.194 4.194 24 N -0.595 5.595 25 Si 0.772 3.228 26 H -0.182 1.182 27 H -0.223 1.223 28 H -0.155 1.155 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.193 0.807 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.154 0.846 38 H 0.230 0.770 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.176 22.187 16.481 30.202 hybrid contribution -0.063 0.274 -0.823 0.870 sum -12.239 22.462 15.658 29.992 Atomic orbital electron populations 1.22139 0.89705 1.04627 1.04065 1.23433 1.01175 1.02311 0.91737 0.87358 1.19530 0.79579 1.05795 0.99565 1.29741 0.95946 0.91908 0.91625 1.81271 1.15093 1.10348 1.10350 1.85691 1.77015 1.30625 1.00993 1.21103 1.13523 0.99856 0.94151 1.21202 0.97955 0.91334 1.00746 1.21137 1.04772 1.00735 0.92310 1.21277 0.95795 0.95137 0.97465 1.20887 1.07441 0.95346 0.98339 1.17630 0.93379 0.85845 0.92021 1.44961 1.70684 1.14887 1.07265 1.21473 1.01775 0.92434 0.82823 1.19238 0.93358 0.88920 0.99296 0.86562 1.29434 0.93082 0.93216 0.91452 1.80961 1.13242 1.11155 1.11872 1.19550 0.97830 0.96077 0.90364 1.21360 1.38373 1.04049 0.93455 0.95451 1.26062 0.94061 0.95671 1.03591 1.70088 1.42209 1.19771 1.27386 0.85674 0.80947 0.78776 0.77397 1.18199 1.22253 1.15525 0.92379 0.90767 0.87767 0.80694 0.85082 0.83919 0.83765 0.83701 0.84592 0.76969 0.90727 0.87641 0.94730 0.91440 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.71 71.98 0.63 -0.24 16 2 C -0.06 -0.53 2.01 30.59 0.06 -0.47 16 3 H 0.11 0.89 6.83 -2.39 -0.02 0.88 16 4 C 0.00 -0.02 5.19 28.79 0.15 0.13 16 5 C 0.22 3.81 14.78 89.44 1.32 5.14 16 6 N -0.49 -12.70 18.54 20.00 0.37 -12.33 16 7 S -0.18 -3.80 19.23 -56.49 -1.09 -4.88 16 8 C -0.17 -3.72 5.98 22.70 0.14 -3.58 16 9 C -0.09 -1.49 8.04 22.39 0.18 -1.31 16 10 C -0.17 -2.55 10.04 22.28 0.22 -2.33 16 11 C -0.08 -1.26 10.04 22.29 0.22 -1.03 16 12 C -0.20 -4.03 9.31 22.38 0.21 -3.82 16 13 C 0.22 5.30 6.66 38.24 0.25 5.56 16 14 N -0.75 -19.52 5.47 -338.83 -1.85 -21.37 16 15 C 0.14 3.50 4.28 86.38 0.37 3.87 16 16 C 0.01 0.46 2.26 -12.60 -0.03 0.43 16 17 H 0.12 3.80 8.14 -2.38 -0.02 3.78 16 18 C 0.24 9.78 13.45 89.46 1.20 10.98 16 19 N -0.50 -22.00 18.53 19.98 0.37 -21.62 16 20 C 0.00 0.03 3.49 29.85 0.10 0.13 16 21 C -0.53 -28.70 9.15 25.60 0.23 -28.47 16 22 H 0.03 1.67 7.84 -2.91 -0.02 1.65 16 23 C 0.00 0.16 5.47 84.66 0.46 0.63 16 24 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 25 Si 0.95 40.93 27.47 68.60 1.88 42.81 16 26 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 27 H -0.30 -13.15 7.11 99.48 0.71 -12.44 16 28 H -0.23 -8.80 6.54 99.48 0.65 -8.15 16 29 H 0.06 0.56 6.15 -2.38 -0.01 0.54 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.18 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.14 1.63 5.00 -2.91 -0.01 1.61 16 35 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 36 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.14 2.47 6.74 -2.91 -0.02 2.45 16 38 H 0.40 11.23 6.76 -92.71 -0.63 10.60 16 39 H 0.07 1.78 7.95 -2.38 -0.02 1.76 16 40 H 0.11 2.16 7.95 -2.39 -0.02 2.15 16 41 H 0.03 1.34 7.20 -2.39 -0.02 1.33 16 42 H 0.07 2.32 7.57 -2.39 -0.02 2.30 16 43 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -79.88 377.93 6.08 -73.81 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.36 Total: 16.79 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 5.73 Total: -14.37 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -0.81 Total: -114.15 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.88 Total: 42.81 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -1.09 Total: -4.88 kcal Total: -79.88 6.08 -73.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583867355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.677 kcal (2) G-P(sol) polarization free energy of solvation -79.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds