Wall clock time and date at job start Tue Mar 31 2020 17:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20762 * 120.00628 * 2 1 4 4 C 1.50701 * 119.99744 * 180.02562 * 2 1 3 5 5 C 1.47201 * 109.47125 * 179.97438 * 4 2 1 6 6 N 3.41958 * 165.97643 * 180.02562 * 2 1 3 7 7 C 1.53006 * 109.46989 * 60.00269 * 4 2 1 8 8 C 1.52999 * 109.46997 * 59.99972 * 7 4 2 9 9 O 1.45206 * 109.46777 * 180.02562 * 8 7 4 10 10 C 1.34224 * 117.00077 * 179.97438 * 9 8 7 11 11 O 1.20833 * 120.00103 * 359.97438 * 10 9 8 12 12 C 1.50696 * 120.00302 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.47581 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47581 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99778 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00242 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99823 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00194 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46719 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47130 * 119.99734 * 18 16 14 21 21 H 1.48501 * 109.47193 * 240.00108 * 18 16 14 22 22 C 1.50699 * 109.47269 * 300.00114 * 4 2 1 23 23 C 1.38233 * 119.99710 * 119.72640 * 22 4 2 24 24 C 1.38237 * 119.99367 * 179.80788 * 23 22 4 25 25 C 1.38240 * 120.00390 * 0.40203 * 24 23 22 26 26 C 1.38227 * 119.99583 * 359.84682 * 25 24 23 27 27 C 1.38236 * 120.00553 * 359.96656 * 26 25 24 28 28 H 1.08994 * 109.47157 * 239.99909 * 1 2 3 29 29 H 1.09003 * 109.46535 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47365 * 119.99320 * 1 2 3 31 31 H 1.09000 * 109.46866 * 299.99759 * 7 4 2 32 32 H 1.09001 * 109.46611 * 179.97438 * 7 4 2 33 33 H 1.09000 * 109.47486 * 60.00167 * 8 7 4 34 34 H 1.09001 * 109.47362 * 299.99445 * 8 7 4 35 35 H 1.09009 * 109.46972 * 299.99362 * 12 10 9 36 36 H 1.08995 * 109.47473 * 59.99636 * 12 10 9 37 37 H 1.09005 * 109.46903 * 300.00018 * 13 12 10 38 38 H 1.09000 * 109.47608 * 59.99121 * 13 12 10 39 39 H 0.97002 * 119.99857 * 179.97438 * 17 16 14 40 40 H 1.07993 * 120.00658 * 0.02562 * 23 22 4 41 41 H 1.08004 * 119.99694 * 180.23248 * 24 23 22 42 42 H 1.07998 * 120.00136 * 179.83652 * 25 24 23 43 43 H 1.08001 * 119.99943 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.00648 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 6 3.7077 -1.0362 -0.0011 6 7 4.8247 -0.8286 -0.0004 7 6 1.8908 -2.1068 -1.2503 8 6 2.2605 -1.3039 -2.4991 9 8 1.9091 -2.0646 -3.6850 10 6 2.1700 -1.4964 -4.8728 11 8 2.6748 -0.3996 -4.9201 12 6 1.8323 -2.2259 -6.1474 13 6 2.2289 -1.3649 -7.3484 14 6 1.8906 -2.0941 -8.6230 15 1 1.4383 -3.0739 -8.5808 16 6 2.1584 -1.5105 -9.8431 17 7 2.7087 -0.3172 -9.8944 18 14 1.7397 -2.4148 -11.4231 19 1 1.1340 -3.7303 -11.0948 20 1 0.7753 -1.6088 -12.2140 21 1 2.9775 -2.6244 -12.2164 22 6 1.8964 -2.0960 1.2295 23 6 1.3152 -3.3437 1.1020 24 6 0.9848 -4.0707 2.2304 25 6 1.2281 -3.5465 3.4862 26 6 1.8045 -2.2967 3.6136 27 6 2.1384 -1.5712 2.4853 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3632 1.0277 0.0005 30 1 -0.3634 -0.5137 -0.8900 31 1 0.8191 -2.3060 -1.2503 32 1 2.4361 -3.0506 -1.2509 33 1 3.3322 -1.1048 -2.4990 34 1 1.7155 -0.3600 -2.4987 35 1 2.3773 -3.1693 -6.1815 36 1 0.7609 -2.4239 -6.1799 37 1 1.6843 -0.4213 -7.3146 38 1 3.3003 -1.1673 -7.3158 39 1 2.8975 0.0933 -10.7528 40 1 1.1224 -3.7520 0.1210 41 1 0.5342 -5.0472 2.1308 42 1 0.9676 -4.1135 4.3677 43 1 1.9942 -1.8869 4.5947 44 1 2.5884 -0.5945 2.5847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873394271.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:41 Heat of formation + Delta-G solvation = -79.323230 kcal Electronic energy + Delta-G solvation = -26851.304310 eV Core-core repulsion = 22926.885642 eV Total energy + Delta-G solvation = -3924.418668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.39024 -39.97170 -39.28338 -37.19820 -36.30813 -35.01444 -33.61190 -31.71783 -31.33458 -30.88599 -30.35390 -27.85498 -26.00648 -24.15127 -22.73816 -22.28989 -21.86228 -21.02989 -19.89636 -18.29176 -17.75924 -17.34888 -16.59207 -16.40053 -16.34693 -15.76600 -15.46255 -15.26677 -15.08048 -14.73730 -14.49956 -14.42631 -14.01546 -13.89438 -13.47394 -13.28995 -13.03570 -12.96385 -12.75436 -12.68529 -12.58680 -12.39083 -12.25299 -11.90491 -11.85563 -11.62145 -11.42443 -11.21417 -10.99361 -10.64062 -10.50675 -10.30902 -10.08209 -9.97868 -9.59832 -9.46403 -9.35503 -9.18515 -8.39824 -6.03036 -4.08272 0.65074 0.85382 1.32930 2.26696 2.39286 2.75590 2.83085 3.04324 3.28049 3.29771 3.37137 3.40406 3.66426 3.89144 4.13225 4.42447 4.42844 4.47535 4.51814 4.58165 4.63257 4.69226 4.92748 4.95024 5.00344 5.01510 5.10317 5.32450 5.32585 5.35297 5.39193 5.48630 5.54198 5.66043 5.90350 5.91513 5.98905 6.07542 6.14289 6.39439 6.56148 6.83761 6.85982 7.17045 7.64673 7.70672 7.96083 8.20091 8.35958 8.99114 9.56024 11.07972 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.002172 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.699034 B =12890.230206 C =13376.797652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.369 3.631 3 O -0.430 6.430 4 C 0.043 3.957 5 C 0.212 3.788 6 N -0.393 5.393 7 C -0.109 4.109 8 C 0.055 3.945 9 O -0.361 6.361 10 C 0.455 3.545 11 O -0.501 6.501 12 C -0.101 4.101 13 C 0.031 3.969 14 C -0.528 4.528 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.083 4.083 23 C -0.099 4.099 24 C -0.115 4.115 25 C -0.109 4.109 26 C -0.114 4.114 27 C -0.106 4.106 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.262 0.738 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.962 -8.011 29.727 32.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.241 3.759 3 O -0.301 6.301 4 C 0.038 3.962 5 C -0.107 4.107 6 N -0.067 5.067 7 C -0.147 4.147 8 C -0.020 4.020 9 O -0.280 6.280 10 C 0.298 3.702 11 O -0.386 6.386 12 C -0.139 4.139 13 C -0.006 4.006 14 C -0.566 4.566 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.527 5.527 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.084 4.084 23 C -0.117 4.117 24 C -0.133 4.133 25 C -0.127 4.127 26 C -0.132 4.132 27 C -0.124 4.124 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.687 -6.618 29.612 31.071 hybrid contribution -0.387 -0.342 -0.788 0.942 sum -7.074 -6.960 28.824 30.485 Atomic orbital electron populations 1.22306 0.91612 1.06196 1.05571 1.24352 0.92778 0.87761 0.70998 1.90525 1.71808 1.33865 1.33877 1.17669 0.84064 0.97531 0.96903 1.28026 0.93893 0.94325 0.94498 1.81224 1.12035 1.06613 1.06788 1.21750 1.05147 0.99341 0.88511 1.22911 1.01456 0.94521 0.83062 1.86526 1.77452 1.49176 1.14805 1.24876 0.74713 0.85687 0.84908 1.90672 1.39546 1.21095 1.87314 1.21780 1.03359 1.00699 0.88049 1.19038 0.98039 0.94640 0.88851 1.21173 1.41488 1.03389 0.90587 0.92204 1.25035 0.95085 0.94942 0.99348 1.70005 1.42443 1.14844 1.25407 0.86480 0.78092 0.79785 0.83284 1.19629 1.20958 1.20980 1.18989 1.02503 0.95462 0.91429 1.21243 0.97421 0.92966 1.00068 1.21228 0.99759 1.00095 0.92169 1.21311 0.97912 0.95570 0.97872 1.21140 0.98743 0.94903 0.98446 1.21065 0.99192 1.00224 0.91885 0.88038 0.88802 0.87805 0.87027 0.87783 0.91266 0.91171 0.88847 0.88770 0.95548 0.95598 0.92868 0.84249 0.85177 0.85608 0.85523 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.08 9.69 36.01 0.35 -0.73 16 2 C 0.37 3.41 4.43 -29.03 -0.13 3.28 16 3 O -0.43 -5.74 16.75 6.00 0.10 -5.64 16 4 C 0.04 0.37 0.44 -159.60 -0.07 0.30 16 5 C 0.21 2.67 11.43 -20.76 -0.24 2.43 16 6 N -0.39 -6.05 18.54 42.16 0.78 -5.27 16 7 C -0.11 -0.86 3.07 -26.73 -0.08 -0.94 16 8 C 0.06 0.71 4.97 37.16 0.18 0.89 16 9 O -0.36 -5.44 10.22 -39.24 -0.40 -5.84 16 10 C 0.45 8.77 7.96 36.00 0.29 9.06 16 11 O -0.50 -11.56 15.73 -18.76 -0.30 -11.86 16 12 C -0.10 -2.01 5.75 -27.89 -0.16 -2.17 16 13 C 0.03 0.82 4.26 -27.89 -0.12 0.70 16 14 C -0.53 -14.62 9.11 -34.44 -0.31 -14.93 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 18 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.08 -0.56 4.25 -104.62 -0.44 -1.00 16 23 C -0.10 -0.50 8.98 -39.58 -0.36 -0.85 16 24 C -0.11 -0.51 10.05 -39.58 -0.40 -0.90 16 25 C -0.11 -0.50 10.05 -39.58 -0.40 -0.89 16 26 C -0.11 -0.62 10.05 -39.59 -0.40 -1.02 16 27 C -0.11 -0.73 8.91 -39.58 -0.35 -1.08 16 28 H 0.10 0.33 7.88 -51.93 -0.41 -0.08 16 29 H 0.09 0.52 8.12 -51.93 -0.42 0.10 16 30 H 0.10 0.41 7.38 -51.93 -0.38 0.03 16 31 H 0.11 0.51 6.64 -51.93 -0.34 0.17 16 32 H 0.10 0.71 7.53 -51.93 -0.39 0.32 16 33 H 0.07 1.04 7.22 -51.93 -0.37 0.66 16 34 H 0.07 0.91 7.21 -51.93 -0.37 0.54 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 36 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.14 0.46 5.90 -52.49 -0.31 0.15 16 41 H 0.13 0.32 8.06 -52.48 -0.42 -0.10 16 42 H 0.13 0.33 8.06 -52.49 -0.42 -0.09 16 43 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 44 H 0.12 0.91 8.04 -52.49 -0.42 0.49 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -36.90 382.84 -6.99 -43.89 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -5.93 Total: -4.76 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.73 Total: -6.30 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 1.52 Total: -31.55 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.60 Total: -23.34 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.90 -6.99 -43.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873394271.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.436 kcal (2) G-P(sol) polarization free energy of solvation -36.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds