Wall clock time and date at job start Tue Mar 31 2020 15:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.46942 * 2 1 4 4 C 1.50701 * 109.47252 * 119.99680 * 2 1 3 5 5 O 1.21287 * 119.99631 * 81.98745 * 4 2 1 6 6 N 1.34771 * 120.00020 * 261.71614 * 4 2 1 7 7 C 1.46500 * 120.00292 * 355.12023 * 6 4 2 8 8 C 1.50697 * 109.47289 * 89.21499 * 7 6 4 9 9 H 1.08005 * 119.99848 * 0.02562 * 8 7 6 10 10 C 1.37866 * 120.00235 * 180.02562 * 8 7 6 11 11 N 1.31521 * 120.00169 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00312 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47273 * 90.00019 * 12 10 8 14 14 H 1.48498 * 109.47184 * 209.99943 * 12 10 8 15 15 H 1.48503 * 109.47090 * 329.99913 * 12 10 8 16 16 C 1.46508 * 119.99679 * 175.12274 * 6 4 2 17 17 C 1.50700 * 109.46907 * 89.95429 * 16 6 4 18 18 C 1.34512 * 125.79069 * 94.89755 * 17 16 6 19 19 C 1.41387 * 106.84070 * 179.97438 * 18 17 16 20 20 C 1.34516 * 106.84085 * 0.02562 * 19 18 17 21 21 O 1.34305 * 108.42017 * 359.73384 * 20 19 18 22 22 C 1.50698 * 109.47194 * 240.00014 * 2 1 3 23 23 C 1.38289 * 119.97382 * 299.99891 * 22 2 1 24 24 C 1.38241 * 120.11226 * 179.97438 * 23 22 2 25 25 C 1.38169 * 120.05510 * 359.97438 * 24 23 22 26 26 C 1.38712 * 119.94414 * 0.02562 * 25 24 23 27 27 O 1.35900 * 120.04979 * 180.02562 * 26 25 24 28 28 C 1.38128 * 119.96957 * 119.71996 * 22 2 1 29 29 H 1.08997 * 109.46909 * 66.63344 * 1 2 3 30 30 H 1.09003 * 109.46781 * 186.63409 * 1 2 3 31 31 H 1.08998 * 109.47186 * 306.63373 * 1 2 3 32 32 H 1.09005 * 109.46990 * 209.22075 * 7 6 4 33 33 H 1.08998 * 109.46856 * 329.21300 * 7 6 4 34 34 H 0.96999 * 120.00260 * 180.02562 * 11 10 8 35 35 H 1.08996 * 109.46630 * 209.95272 * 16 6 4 36 36 H 1.08997 * 109.46911 * 329.95156 * 16 6 4 37 37 H 1.08000 * 126.57606 * 0.03741 * 18 17 16 38 38 H 1.07999 * 126.57386 * 179.97438 * 19 18 17 39 39 H 1.07995 * 125.78667 * 180.02562 * 20 19 18 40 40 H 1.07992 * 119.94156 * 359.97438 * 23 22 2 41 41 H 1.08002 * 119.97263 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.02279 * 180.02562 * 25 24 23 43 43 H 0.96697 * 113.99924 * 90.00832 * 27 26 25 44 44 H 1.07994 * 120.03077 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.0965 -1.9214 1.2478 6 7 2.4156 0.0003 2.3096 7 6 2.4455 1.4638 2.2501 8 6 1.1023 2.0108 2.6595 9 1 0.3061 1.3357 2.9368 10 6 0.8898 3.3728 2.6802 11 7 1.8592 4.1949 2.3421 12 14 -0.7749 4.0509 3.1883 13 1 -0.7904 4.2768 4.6560 14 1 -1.0208 5.3365 2.4871 15 1 -1.8371 3.0783 2.8260 16 6 2.8023 -0.6907 3.5422 17 6 4.2822 -0.9744 3.5159 18 6 5.2405 -0.2049 4.0627 19 6 6.4754 -0.8430 3.8040 20 6 6.1979 -1.9639 3.1141 21 8 4.8674 -2.0412 2.9473 22 6 2.0324 -0.7104 -1.2304 23 6 1.6980 -2.0344 -1.4487 24 6 2.1568 -2.6887 -2.5768 25 6 2.9505 -2.0207 -3.4894 26 6 3.2874 -0.6927 -3.2727 27 8 4.0675 -0.0335 -4.1693 28 6 2.8217 -0.0368 -2.1422 29 1 -0.3633 0.4076 -0.9434 30 1 -0.3633 -1.0208 0.1187 31 1 -0.3633 0.6132 0.8246 32 1 3.2126 1.8394 2.9273 33 1 2.6723 1.7815 1.2324 34 1 1.7098 5.1532 2.3569 35 1 2.5682 -0.0610 4.4005 36 1 2.2537 -1.6294 3.6199 37 1 5.0944 0.7219 4.5976 38 1 7.4537 -0.4964 4.1024 39 1 6.9217 -2.6825 2.7591 40 1 1.0774 -2.5580 -0.7368 41 1 1.8940 -3.7226 -2.7452 42 1 3.3084 -2.5323 -4.3707 43 1 3.5713 0.4124 -4.8693 44 1 3.0792 0.9983 -1.9733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931268485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:29 Heat of formation + Delta-G solvation = -38.016277 kcal Electronic energy + Delta-G solvation = -28469.209915 eV Core-core repulsion = 24546.582450 eV Total energy + Delta-G solvation = -3922.627465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.14991 -40.03364 -38.88193 -36.66706 -35.19387 -33.57949 -32.75851 -32.50037 -30.41907 -29.92472 -28.68706 -27.35817 -25.84114 -23.89853 -23.06146 -22.37095 -21.44915 -21.31682 -20.14187 -18.69421 -17.47186 -17.15951 -16.66861 -16.38192 -16.13226 -15.88408 -15.34839 -15.14435 -14.82647 -14.56049 -14.39454 -13.81742 -13.67603 -13.25329 -13.06808 -12.66444 -12.44993 -12.41089 -12.25154 -12.09268 -11.93855 -11.86393 -11.64832 -11.48600 -11.32965 -11.04166 -11.00013 -10.95719 -10.58726 -10.21288 -10.12055 -9.85523 -9.55760 -9.12871 -8.64207 -8.56387 -8.34403 -8.13843 -7.88134 -6.24343 -4.32411 1.46993 1.53458 2.05929 2.92478 3.18290 3.21162 3.26707 3.28907 3.51603 3.78832 4.00097 4.27149 4.38263 4.98760 5.08347 5.09073 5.09906 5.26097 5.32806 5.37128 5.44266 5.59788 5.63233 5.72672 5.77261 5.84348 6.01970 6.07142 6.12935 6.17143 6.24274 6.28849 6.37448 6.44381 6.57599 6.61573 6.65121 6.73096 6.84960 6.91681 7.02160 7.16190 7.40125 7.55364 7.69737 7.76033 7.97267 8.21488 8.71914 8.92115 9.35697 10.82421 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.007628 B = 0.005446 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3669.820855 B = 5140.095098 C = 7437.079327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 H 0.113 0.887 4 C 0.528 3.472 5 O -0.558 6.558 6 N -0.591 5.591 7 C 0.236 3.764 8 C -0.538 4.538 9 H 0.064 0.936 10 C 0.067 3.933 11 N -0.889 5.889 12 Si 0.894 3.106 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.197 3.803 17 C -0.014 4.014 18 C -0.205 4.205 19 C -0.217 4.217 20 C -0.052 4.052 21 O -0.164 6.164 22 C -0.050 4.050 23 C -0.091 4.091 24 C -0.113 4.113 25 C -0.151 4.151 26 C 0.093 3.907 27 O -0.501 6.501 28 C -0.136 4.136 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.266 0.734 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.195 0.805 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.385 0.615 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.355 -8.376 -5.696 10.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.092 4.092 3 H 0.131 0.869 4 C 0.316 3.684 5 O -0.438 6.438 6 N -0.321 5.321 7 C 0.117 3.883 8 C -0.577 4.577 9 H 0.082 0.918 10 C -0.136 4.136 11 N -0.527 5.527 12 Si 0.722 3.278 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.197 1.197 16 C 0.073 3.927 17 C -0.066 4.066 18 C -0.225 4.225 19 C -0.236 4.236 20 C -0.121 4.121 21 O -0.059 6.059 22 C -0.051 4.051 23 C -0.109 4.109 24 C -0.131 4.131 25 C -0.170 4.170 26 C 0.049 3.951 27 O -0.310 6.310 28 C -0.155 4.155 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.106 0.894 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.212 0.788 40 H 0.151 0.849 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.240 0.760 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.725 -9.219 -5.499 11.074 hybrid contribution -0.721 1.070 0.089 1.294 sum 2.003 -8.148 -5.410 9.984 Atomic orbital electron populations 1.21668 0.91593 1.02232 1.03302 1.20296 0.98212 1.01023 0.89669 0.86907 1.20299 0.76562 0.87114 0.84434 1.90602 1.56070 1.14217 1.82869 1.48282 1.63517 1.09601 1.10728 1.19528 0.97913 0.72238 0.98632 1.21457 0.97639 0.91723 1.46859 0.91802 1.24926 0.97045 0.96804 0.94840 1.69925 1.32070 1.03476 1.47194 0.86549 0.83915 0.78566 0.78788 1.20520 1.21089 1.19656 1.19721 0.84789 0.98868 0.89291 1.23229 0.96888 0.87541 0.98917 1.21654 0.91776 1.02281 1.06773 1.21774 0.99271 0.97347 1.05227 1.23957 0.82719 1.01208 1.04184 1.84124 1.19485 1.41095 1.61201 1.19538 0.96496 0.94211 0.94854 1.21200 0.99471 0.93922 0.96260 1.20998 0.98019 0.99682 0.94407 1.21326 1.00046 0.94741 1.00869 1.18363 0.94317 0.91169 0.91233 1.84837 1.34770 1.70389 1.41008 1.21386 0.98198 1.00818 0.95076 0.92148 0.92784 0.89920 0.94363 0.94260 0.92440 0.87024 0.89366 0.83427 0.83918 0.78797 0.84949 0.85966 0.86035 0.76001 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.90 37.16 0.33 -1.85 16 2 C -0.07 -1.31 2.52 -92.92 -0.23 -1.54 16 3 H 0.11 2.22 5.31 -51.93 -0.28 1.94 16 4 C 0.53 10.82 6.60 -10.99 -0.07 10.75 16 5 O -0.56 -12.20 14.28 5.55 0.08 -12.12 16 6 N -0.59 -12.14 2.44 -176.43 -0.43 -12.57 16 7 C 0.24 5.36 4.86 -5.20 -0.03 5.33 16 8 C -0.54 -12.94 8.68 -34.45 -0.30 -13.24 16 9 H 0.06 1.54 7.64 -52.48 -0.40 1.14 16 10 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -23.45 13.29 55.43 0.74 -22.71 16 12 Si 0.89 19.50 29.54 -169.99 -5.02 14.48 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 C 0.20 3.63 5.89 -5.19 -0.03 3.60 16 17 C -0.01 -0.25 6.90 -35.63 -0.25 -0.50 16 18 C -0.20 -3.48 10.81 -39.70 -0.43 -3.91 16 19 C -0.22 -3.27 10.91 -39.70 -0.43 -3.71 16 20 C -0.05 -0.79 12.09 29.42 0.36 -0.43 16 21 O -0.16 -3.07 10.65 5.69 0.06 -3.01 16 22 C -0.05 -0.86 4.73 -104.64 -0.49 -1.36 16 23 C -0.09 -1.47 8.11 -39.56 -0.32 -1.79 16 24 C -0.11 -1.58 10.04 -39.61 -0.40 -1.98 16 25 C -0.15 -2.06 9.99 -39.43 -0.39 -2.46 16 26 C 0.09 1.38 6.70 -39.22 -0.26 1.12 16 27 O -0.50 -6.54 13.50 -19.42 -0.26 -6.80 16 28 C -0.14 -2.22 9.61 -39.43 -0.38 -2.59 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.86 7.62 -51.93 -0.40 0.46 16 31 H 0.08 1.51 7.26 -51.93 -0.38 1.13 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.04 0.94 5.92 -51.93 -0.31 0.63 16 34 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.11 1.90 8.07 -51.93 -0.42 1.48 16 36 H 0.09 1.60 7.50 -51.93 -0.39 1.21 16 37 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 38 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.20 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.13 2.20 6.70 -52.49 -0.35 1.85 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 43 H 0.39 3.02 9.06 45.56 0.41 3.43 16 44 H 0.13 2.04 7.94 -52.49 -0.42 1.62 16 LS Contribution 375.66 15.07 5.66 5.66 Total: -1.00 -30.30 375.66 -7.62 -37.92 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -5.01 Total: 12.14 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -3.43 Total: -12.98 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.31 Total: -35.28 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.12 Total: -21.94 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.30 -7.62 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931268485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.097 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds