Wall clock time and date at job start Tue Mar 31 2020 15:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.46942 * 2 1 4 4 C 1.50701 * 109.47252 * 119.99680 * 2 1 3 5 5 O 1.21287 * 119.99631 * 81.98745 * 4 2 1 6 6 N 1.34771 * 120.00020 * 261.71614 * 4 2 1 7 7 C 1.46500 * 120.00292 * 355.12023 * 6 4 2 8 8 C 1.50697 * 109.47289 * 89.21499 * 7 6 4 9 9 H 1.08005 * 119.99848 * 0.02562 * 8 7 6 10 10 C 1.37866 * 120.00235 * 180.02562 * 8 7 6 11 11 N 1.31521 * 120.00169 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00312 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47273 * 90.00019 * 12 10 8 14 14 H 1.48498 * 109.47184 * 209.99943 * 12 10 8 15 15 H 1.48503 * 109.47090 * 329.99913 * 12 10 8 16 16 C 1.46508 * 119.99679 * 175.12274 * 6 4 2 17 17 C 1.50700 * 109.46907 * 89.95429 * 16 6 4 18 18 C 1.34512 * 125.79069 * 94.89755 * 17 16 6 19 19 C 1.41387 * 106.84070 * 179.97438 * 18 17 16 20 20 C 1.34516 * 106.84085 * 0.02562 * 19 18 17 21 21 O 1.34305 * 108.42017 * 359.73384 * 20 19 18 22 22 C 1.50698 * 109.47194 * 240.00014 * 2 1 3 23 23 C 1.38289 * 119.97382 * 299.99891 * 22 2 1 24 24 C 1.38241 * 120.11226 * 179.97438 * 23 22 2 25 25 C 1.38169 * 120.05510 * 359.97438 * 24 23 22 26 26 C 1.38712 * 119.94414 * 0.02562 * 25 24 23 27 27 O 1.35900 * 120.04979 * 180.02562 * 26 25 24 28 28 C 1.38128 * 119.96957 * 119.71996 * 22 2 1 29 29 H 1.08997 * 109.46909 * 66.63344 * 1 2 3 30 30 H 1.09003 * 109.46781 * 186.63409 * 1 2 3 31 31 H 1.08998 * 109.47186 * 306.63373 * 1 2 3 32 32 H 1.09005 * 109.46990 * 209.22075 * 7 6 4 33 33 H 1.08998 * 109.46856 * 329.21300 * 7 6 4 34 34 H 0.96999 * 120.00260 * 180.02562 * 11 10 8 35 35 H 1.08996 * 109.46630 * 209.95272 * 16 6 4 36 36 H 1.08997 * 109.46911 * 329.95156 * 16 6 4 37 37 H 1.08000 * 126.57606 * 0.03741 * 18 17 16 38 38 H 1.07999 * 126.57386 * 179.97438 * 19 18 17 39 39 H 1.07995 * 125.78667 * 180.02562 * 20 19 18 40 40 H 1.07992 * 119.94156 * 359.97438 * 23 22 2 41 41 H 1.08002 * 119.97263 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.02279 * 180.02562 * 25 24 23 43 43 H 0.96697 * 113.99924 * 90.00832 * 27 26 25 44 44 H 1.07994 * 120.03077 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.0965 -1.9214 1.2478 6 7 2.4156 0.0003 2.3096 7 6 2.4455 1.4638 2.2501 8 6 1.1023 2.0108 2.6595 9 1 0.3061 1.3357 2.9368 10 6 0.8898 3.3728 2.6802 11 7 1.8592 4.1949 2.3421 12 14 -0.7749 4.0509 3.1883 13 1 -0.7904 4.2768 4.6560 14 1 -1.0208 5.3365 2.4871 15 1 -1.8371 3.0783 2.8260 16 6 2.8023 -0.6907 3.5422 17 6 4.2822 -0.9744 3.5159 18 6 5.2405 -0.2049 4.0627 19 6 6.4754 -0.8430 3.8040 20 6 6.1979 -1.9639 3.1141 21 8 4.8674 -2.0412 2.9473 22 6 2.0324 -0.7104 -1.2304 23 6 1.6980 -2.0344 -1.4487 24 6 2.1568 -2.6887 -2.5768 25 6 2.9505 -2.0207 -3.4894 26 6 3.2874 -0.6927 -3.2727 27 8 4.0675 -0.0335 -4.1693 28 6 2.8217 -0.0368 -2.1422 29 1 -0.3633 0.4076 -0.9434 30 1 -0.3633 -1.0208 0.1187 31 1 -0.3633 0.6132 0.8246 32 1 3.2126 1.8394 2.9273 33 1 2.6723 1.7815 1.2324 34 1 1.7098 5.1532 2.3569 35 1 2.5682 -0.0610 4.4005 36 1 2.2537 -1.6294 3.6199 37 1 5.0944 0.7219 4.5976 38 1 7.4537 -0.4964 4.1024 39 1 6.9217 -2.6825 2.7591 40 1 1.0774 -2.5580 -0.7368 41 1 1.8940 -3.7226 -2.7452 42 1 3.3084 -2.5323 -4.3707 43 1 3.5713 0.4124 -4.8693 44 1 3.0792 0.9983 -1.9733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931268485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:28 Heat of formation + Delta-G solvation = -55.301533 kcal Electronic energy + Delta-G solvation = -28469.959460 eV Core-core repulsion = 24546.582450 eV Total energy + Delta-G solvation = -3923.377010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.46445 -41.42445 -40.21879 -37.82914 -36.86484 -34.97912 -34.52159 -33.86177 -31.81702 -31.14493 -29.90337 -29.14780 -27.29287 -25.32227 -24.84039 -23.52590 -22.73689 -22.61801 -21.44777 -20.10301 -18.80285 -18.68338 -18.26629 -17.96995 -17.39121 -17.27518 -16.68240 -16.47724 -16.29721 -16.06796 -15.83020 -15.17932 -14.94519 -14.67979 -14.36420 -14.35604 -13.88085 -13.72040 -13.68492 -13.49368 -13.32289 -13.16142 -13.05007 -12.96406 -12.85781 -12.67584 -12.58188 -12.27096 -12.11890 -11.91853 -11.71316 -11.34174 -10.86723 -10.72128 -10.50875 -9.80891 -9.66975 -9.49945 -9.38896 -8.17575 -6.31381 0.30112 0.36765 0.74051 1.44532 1.47468 1.55785 1.63868 1.69959 2.18716 2.35343 2.47103 2.74598 3.14061 3.27871 3.68675 3.74202 3.84478 3.97268 4.13803 4.15893 4.22561 4.26623 4.32950 4.40801 4.44682 4.55219 4.62253 4.81221 4.83779 4.90405 4.95962 5.00377 5.00830 5.04935 5.18695 5.25470 5.27012 5.44457 5.50166 5.59612 5.65192 5.69793 5.78748 5.92630 6.05738 6.24285 6.51380 6.81480 6.87173 7.25755 7.41524 8.88863 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.007628 B = 0.005446 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3669.820855 B = 5140.095098 C = 7437.079327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.066 4.066 3 H 0.093 0.907 4 C 0.523 3.477 5 O -0.573 6.573 6 N -0.595 5.595 7 C 0.254 3.746 8 C -0.536 4.536 9 H 0.062 0.938 10 C 0.025 3.975 11 N -0.921 5.921 12 Si 0.953 3.047 13 H -0.277 1.277 14 H -0.285 1.285 15 H -0.265 1.265 16 C 0.196 3.804 17 C -0.043 4.043 18 C -0.208 4.208 19 C -0.222 4.222 20 C -0.048 4.048 21 O -0.190 6.190 22 C -0.066 4.066 23 C -0.105 4.105 24 C -0.106 4.106 25 C -0.146 4.146 26 C 0.097 3.903 27 O -0.508 6.508 28 C -0.156 4.156 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.021 0.979 33 H 0.024 0.976 34 H 0.267 0.733 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.151 0.849 38 H 0.173 0.827 39 H 0.236 0.764 40 H 0.123 0.877 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.409 0.591 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 -9.496 -6.794 11.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.087 4.087 3 H 0.111 0.889 4 C 0.312 3.688 5 O -0.454 6.454 6 N -0.324 5.324 7 C 0.134 3.866 8 C -0.574 4.574 9 H 0.080 0.920 10 C -0.176 4.176 11 N -0.560 5.560 12 Si 0.779 3.221 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.189 1.189 16 C 0.073 3.927 17 C -0.094 4.094 18 C -0.228 4.228 19 C -0.241 4.241 20 C -0.115 4.115 21 O -0.086 6.086 22 C -0.067 4.067 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.164 4.164 26 C 0.052 3.948 27 O -0.321 6.321 28 C -0.174 4.174 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.137 0.863 36 H 0.105 0.895 37 H 0.169 0.831 38 H 0.191 0.809 39 H 0.252 0.748 40 H 0.141 0.859 41 H 0.170 0.830 42 H 0.170 0.830 43 H 0.268 0.732 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.074 -10.339 -6.599 12.644 hybrid contribution -0.713 1.373 0.375 1.592 sum 2.362 -8.966 -6.224 11.167 Atomic orbital electron populations 1.21604 0.90506 1.02389 1.03495 1.20221 0.99093 0.99734 0.89702 0.88926 1.20685 0.76171 0.87069 0.84858 1.90576 1.56818 1.14761 1.83234 1.48281 1.63708 1.08772 1.11672 1.19143 0.96875 0.73516 0.97075 1.21598 0.97922 0.91813 1.46104 0.91971 1.25602 0.99971 0.97103 0.94881 1.70027 1.33856 1.03676 1.48485 0.85625 0.80348 0.77846 0.78329 1.20248 1.21087 1.18948 1.19775 0.85573 0.98677 0.88677 1.23129 0.96866 0.88559 1.00829 1.21907 0.92658 1.02174 1.06101 1.22140 0.99777 0.97131 1.05072 1.24844 0.81853 1.01875 1.02972 1.84097 1.21279 1.41427 1.61809 1.19467 0.97741 0.94907 0.94599 1.21206 1.00253 0.93580 0.97316 1.21322 0.96974 1.00909 0.93175 1.21642 0.99114 0.94125 1.01554 1.18444 0.93614 0.91789 0.90927 1.84772 1.35248 1.70605 1.41488 1.21428 0.99130 1.00776 0.96101 0.90285 0.92058 0.91770 0.96097 0.95835 0.92440 0.86257 0.89501 0.83097 0.80921 0.74782 0.85875 0.82966 0.83020 0.73237 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.17 8.90 71.98 0.64 -3.53 16 2 C -0.07 -2.53 2.52 -12.28 -0.03 -2.57 16 3 H 0.09 3.87 5.31 -2.38 -0.01 3.85 16 4 C 0.52 22.15 6.60 87.66 0.58 22.73 16 5 O -0.57 -25.63 14.28 -3.05 -0.04 -25.67 16 6 N -0.59 -25.34 2.44 -830.49 -2.03 -27.37 16 7 C 0.25 12.01 4.86 85.63 0.42 12.43 16 8 C -0.54 -26.35 8.68 25.60 0.22 -26.13 16 9 H 0.06 3.04 7.64 -2.91 -0.02 3.02 16 10 C 0.02 1.25 5.46 84.65 0.46 1.72 16 11 N -0.92 -49.55 13.29 21.44 0.28 -49.27 16 12 Si 0.95 40.14 29.54 68.60 2.03 42.16 16 13 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 14 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 15 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 16 C 0.20 7.47 5.89 85.63 0.50 7.98 16 17 C -0.04 -1.60 6.90 24.83 0.17 -1.42 16 18 C -0.21 -7.07 10.81 22.19 0.24 -6.83 16 19 C -0.22 -6.35 10.91 22.19 0.24 -6.11 16 20 C -0.05 -1.37 12.09 66.97 0.81 -0.56 16 21 O -0.19 -7.09 10.65 -2.56 -0.03 -7.12 16 22 C -0.07 -2.31 4.73 -19.88 -0.09 -2.40 16 23 C -0.11 -3.35 8.11 22.28 0.18 -3.17 16 24 C -0.11 -2.71 10.04 22.25 0.22 -2.49 16 25 C -0.15 -3.57 9.99 22.37 0.22 -3.34 16 26 C 0.10 2.70 6.70 22.51 0.15 2.85 16 27 O -0.51 -12.23 13.50 -92.42 -1.25 -13.48 16 28 C -0.16 -5.09 9.61 22.37 0.21 -4.87 16 29 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.06 1.96 7.62 -2.39 -0.02 1.95 16 31 H 0.06 2.39 7.26 -2.39 -0.02 2.38 16 32 H 0.02 1.05 8.07 -2.38 -0.02 1.04 16 33 H 0.02 1.20 5.92 -2.39 -0.01 1.18 16 34 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 35 H 0.12 4.21 8.07 -2.39 -0.02 4.20 16 36 H 0.09 3.27 7.50 -2.39 -0.02 3.25 16 37 H 0.15 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 39 H 0.24 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.12 4.09 6.70 -2.91 -0.02 4.07 16 41 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 42 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.41 5.45 9.06 -74.06 -0.67 4.78 16 44 H 0.12 4.00 7.94 -2.91 -0.02 3.97 16 Total: -1.00 -65.56 375.66 4.48 -61.08 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.36 Total: 35.39 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 5.16 Total: -15.73 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -1.74 Total: -76.63 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -1.32 Total: -46.27 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.16 kcal Total: -65.56 4.48 -61.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931268485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.778 kcal (2) G-P(sol) polarization free energy of solvation -65.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds