Wall clock time and date at job start Tue Mar 31 2020 17:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.39758 * 119.63805 * 2 1 4 4 C 1.38871 * 120.10319 * 346.39415 * 3 2 1 5 5 C 1.38084 * 119.98127 * 180.45656 * 4 3 2 6 6 C 1.38309 * 120.06124 * 359.56727 * 5 4 3 7 7 C 1.38258 * 120.10710 * 359.46127 * 6 5 4 8 8 C 1.38142 * 120.06981 * 0.27673 * 7 6 5 9 9 C 1.50706 * 119.94089 * 181.01924 * 8 7 6 10 10 H 1.08998 * 109.39755 * 332.93665 * 9 8 7 11 11 C 1.50696 * 109.43657 * 92.82908 * 9 8 7 12 12 O 1.20829 * 120.00229 * 0.21393 * 11 9 8 13 13 O 1.34229 * 120.00128 * 180.21808 * 11 9 8 14 14 C 1.45199 * 117.00078 * 174.64463 * 13 11 9 15 15 C 1.50694 * 112.85160 * 304.54529 * 14 13 11 16 16 H 1.08004 * 119.99881 * 133.72344 * 15 14 13 17 17 C 1.37880 * 120.00086 * 314.00472 * 15 14 13 18 18 N 1.31515 * 120.00177 * 171.73937 * 17 15 14 19 19 Si 1.86795 * 119.99990 * 351.72882 * 17 15 14 20 20 H 1.48503 * 109.47055 * 87.01260 * 19 17 15 21 21 H 1.48502 * 109.47470 * 207.01371 * 19 17 15 22 22 H 1.48507 * 109.47388 * 327.01161 * 19 17 15 23 23 C 1.53783 * 113.68892 * 75.81814 * 14 13 11 24 24 C 1.53773 * 87.08244 * 89.12448 * 23 14 13 25 25 C 1.53782 * 87.08357 * 25.43358 * 24 23 14 26 26 C 1.52889 * 109.68137 * 212.89525 * 9 8 7 27 27 C 1.34430 * 119.63598 * 180.02562 * 2 1 3 28 28 O 1.21284 * 119.71169 * 354.57128 * 27 2 1 29 29 H 1.09003 * 109.46987 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47184 * 299.97855 * 1 2 3 31 31 H 1.09005 * 109.47070 * 59.98418 * 1 2 3 32 32 H 1.07993 * 120.01083 * 0.44629 * 4 3 2 33 33 H 1.08006 * 119.96876 * 179.58927 * 5 4 3 34 34 H 1.07998 * 119.94767 * 179.48485 * 6 5 4 35 35 H 1.07997 * 119.96352 * 180.25731 * 7 6 5 36 36 H 0.96999 * 120.00048 * 180.02562 * 18 17 15 37 37 H 1.09000 * 113.60878 * 203.67320 * 23 14 13 38 38 H 1.08996 * 113.61423 * 334.57379 * 23 14 13 39 39 H 1.08996 * 113.61514 * 270.88271 * 24 23 14 40 40 H 1.09004 * 113.69255 * 139.99408 * 24 23 14 41 41 H 1.09000 * 113.61391 * 220.02145 * 25 24 23 42 42 H 1.08994 * 113.69023 * 89.12460 * 25 24 23 43 43 H 1.08995 * 109.43270 * 71.75524 * 26 9 8 44 44 H 1.09005 * 109.42545 * 191.64876 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1561 1.2147 0.0000 4 6 1.4856 2.3976 -0.2826 5 6 2.1729 3.5952 -0.2912 6 6 3.5268 3.6191 -0.0098 7 6 4.1933 2.4459 0.2917 8 6 3.5095 1.2457 0.3070 9 6 4.2338 -0.0283 0.6585 10 1 5.2886 0.0727 0.4029 11 6 4.0988 -0.2906 2.1363 12 8 3.4750 0.4760 2.8315 13 8 4.6716 -1.3757 2.6805 14 6 4.6030 -1.5028 4.1253 15 6 5.1663 -0.3050 4.8456 16 1 4.6223 0.1356 5.6680 17 6 6.3734 0.2319 4.4510 18 7 6.7878 1.3683 4.9671 19 14 7.4204 -0.6550 3.1835 20 1 7.0017 -0.2427 1.8197 21 1 8.8490 -0.3057 3.3895 22 1 7.2429 -2.1217 3.3336 23 6 3.2220 -1.9393 4.6422 24 6 3.7084 -3.3895 4.4845 25 6 5.1371 -2.8455 4.6516 26 6 3.6306 -1.1959 -0.1227 27 6 2.1297 -1.1684 -0.0005 28 8 1.5155 -2.2095 0.0987 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5141 -0.8899 32 1 0.4271 2.3808 -0.4958 33 1 1.6526 4.5142 -0.5175 34 1 4.0642 4.5557 -0.0251 35 1 5.2497 2.4678 0.5152 36 1 7.6368 1.7463 4.6893 37 1 3.0323 -1.6524 5.6765 38 1 2.4026 -1.6784 3.9724 39 1 3.5141 -3.8104 3.4980 40 1 3.3942 -4.0475 5.2948 41 1 5.8637 -3.3161 3.9893 42 1 5.4722 -2.8060 5.6880 43 1 3.9103 -1.1127 -1.1728 44 1 4.0091 -2.1355 0.2799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772343708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:43 Heat of formation + Delta-G solvation = -51.309716 kcal Electronic energy + Delta-G solvation = -30044.051695 eV Core-core repulsion = 26120.847783 eV Total energy + Delta-G solvation = -3923.203911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -41.37321 -39.63014 -38.66195 -37.30838 -35.54067 -34.46632 -34.35036 -32.38125 -30.28933 -29.53570 -27.86212 -26.91537 -25.01691 -24.88759 -23.19762 -22.57239 -21.92842 -20.78705 -18.98911 -18.23904 -17.79504 -17.19691 -16.85565 -16.52254 -15.73066 -15.55699 -15.32199 -14.90621 -14.72095 -14.46424 -14.31106 -14.01480 -13.76472 -13.65121 -13.12720 -12.85256 -12.76041 -12.58028 -12.30424 -12.24917 -12.02819 -11.80572 -11.49702 -11.44489 -11.24776 -11.10904 -10.97444 -10.37196 -10.26032 -10.19939 -10.05193 -9.93858 -9.87559 -9.45240 -9.16661 -8.81532 -8.67719 -8.42142 -7.89609 -6.18133 -4.19442 1.21180 1.36868 2.52867 2.74714 3.06992 3.21961 3.33515 3.40084 3.55283 3.97223 4.29342 4.36676 4.51229 4.69039 4.83646 4.99877 5.06941 5.13439 5.16888 5.27823 5.32555 5.40697 5.50152 5.51350 5.53347 5.63326 5.65512 5.67009 5.79475 5.87592 5.98881 6.08028 6.22852 6.32477 6.36275 6.55679 6.60314 6.63288 6.64068 6.79397 6.87460 6.99908 7.22318 7.26264 7.37941 7.73513 7.89378 8.37358 8.81238 8.91120 9.43069 10.93075 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.006205 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.526341 B = 4511.716871 C = 5704.238567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.553 5.553 3 C 0.177 3.823 4 C -0.157 4.157 5 C -0.086 4.086 6 C -0.141 4.141 7 C -0.063 4.063 8 C -0.101 4.101 9 C -0.049 4.049 10 H 0.125 0.875 11 C 0.460 3.540 12 O -0.460 6.460 13 O -0.359 6.359 14 C 0.196 3.804 15 C -0.509 4.509 16 H 0.083 0.917 17 C 0.078 3.922 18 N -0.881 5.881 19 Si 0.880 3.120 20 H -0.281 1.281 21 H -0.299 1.299 22 H -0.252 1.252 23 C -0.140 4.140 24 C -0.147 4.147 25 C -0.123 4.123 26 C -0.131 4.131 27 C 0.521 3.479 28 O -0.522 6.522 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.265 0.735 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 0.144 -13.691 15.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.276 5.276 3 C 0.083 3.917 4 C -0.177 4.177 5 C -0.105 4.105 6 C -0.160 4.160 7 C -0.082 4.082 8 C -0.104 4.104 9 C -0.069 4.069 10 H 0.143 0.857 11 C 0.299 3.701 12 O -0.343 6.343 13 O -0.278 6.278 14 C 0.161 3.839 15 C -0.546 4.546 16 H 0.101 0.899 17 C -0.126 4.126 18 N -0.518 5.518 19 Si 0.709 3.291 20 H -0.207 1.207 21 H -0.227 1.227 22 H -0.176 1.176 23 C -0.177 4.177 24 C -0.184 4.184 25 C -0.160 4.160 26 C -0.171 4.171 27 C 0.311 3.689 28 O -0.397 6.397 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.113 0.887 43 H 0.132 0.868 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.757 -0.184 -13.346 15.438 hybrid contribution 0.663 -0.049 -0.457 0.807 sum -7.094 -0.233 -13.804 15.522 Atomic orbital electron populations 1.21875 0.78101 1.04902 1.02228 1.45243 1.07661 1.04769 1.69879 1.17523 0.90740 0.85389 0.98074 1.20689 1.00087 0.91073 1.05893 1.20934 0.94321 0.97029 0.98185 1.21048 0.94704 0.98016 1.02195 1.20890 1.00290 0.91035 0.95986 1.18912 0.92349 0.94714 1.04388 1.20011 1.02813 0.92532 0.91511 0.85724 1.22502 0.78024 0.80228 0.89354 1.90659 1.36491 1.44933 1.62253 1.86224 1.70619 1.42954 1.27958 1.21132 0.93799 0.95308 0.73639 1.21020 1.04678 1.11800 1.17125 0.89874 1.24995 0.97547 0.94136 0.95935 1.69956 1.21262 1.17242 1.43321 0.86865 0.78550 0.82116 0.81607 1.20715 1.22667 1.17579 1.23283 0.98008 0.94949 1.01509 1.22930 0.97986 0.96784 1.00712 1.23295 0.95619 0.95679 1.01441 1.21768 0.90901 1.01094 1.03316 1.20643 0.90638 0.82683 0.74916 1.90707 1.69805 1.31482 1.47737 0.88773 0.91167 0.91364 0.85498 0.85576 0.85606 0.85296 0.92571 0.89724 0.92883 0.90988 0.92417 0.91941 0.88734 0.86831 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 9.49 59.85 0.57 1.41 16 2 N -0.55 -8.36 3.08 -121.02 -0.37 -8.73 16 3 C 0.18 2.68 6.38 -83.80 -0.53 2.15 16 4 C -0.16 -1.96 9.31 -39.40 -0.37 -2.32 16 5 C -0.09 -1.00 10.04 -39.61 -0.40 -1.39 16 6 C -0.14 -1.80 10.04 -39.55 -0.40 -2.19 16 7 C -0.06 -0.96 9.68 -39.61 -0.38 -1.35 16 8 C -0.10 -1.65 4.16 -104.44 -0.43 -2.09 16 9 C -0.05 -0.86 2.84 -92.98 -0.26 -1.12 16 10 H 0.12 2.00 7.48 -51.93 -0.39 1.61 16 11 C 0.46 10.35 5.65 36.00 0.20 10.55 16 12 O -0.46 -11.85 14.35 -18.75 -0.27 -12.12 16 13 O -0.36 -8.34 7.17 -39.26 -0.28 -8.62 16 14 C 0.20 4.72 0.12 -90.96 -0.01 4.71 16 15 C -0.51 -14.38 7.53 -34.44 -0.26 -14.64 16 16 H 0.08 2.60 8.06 -52.48 -0.42 2.18 16 17 C 0.08 2.23 5.33 -17.82 -0.10 2.14 16 18 N -0.88 -26.62 13.96 55.43 0.77 -25.84 16 19 Si 0.88 21.49 25.07 -169.99 -4.26 17.23 16 20 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 21 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.25 -5.84 5.28 56.52 0.30 -5.55 16 23 C -0.14 -3.06 7.04 -25.92 -0.18 -3.25 16 24 C -0.15 -2.77 8.03 -25.92 -0.21 -2.98 16 25 C -0.12 -2.58 6.55 -25.92 -0.17 -2.75 16 26 C -0.13 -1.95 5.52 -27.98 -0.15 -2.10 16 27 C 0.52 8.69 7.10 -11.18 -0.08 8.61 16 28 O -0.52 -9.84 16.36 5.55 0.09 -9.75 16 29 H 0.09 1.17 6.86 -51.93 -0.36 0.81 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.60 7.43 -51.93 -0.39 0.22 16 32 H 0.13 1.25 6.63 -52.49 -0.35 0.90 16 33 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.08 1.83 8.09 -51.93 -0.42 1.41 16 38 H 0.05 1.20 7.92 -51.93 -0.41 0.79 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.28 6.75 -51.93 -0.35 0.93 16 42 H 0.09 1.94 8.09 -51.93 -0.42 1.52 16 43 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.12 1.83 7.82 -51.93 -0.41 1.42 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -34.77 353.90 -8.29 -43.06 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.14 Total: 6.05 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.17 Total: -6.61 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.40 Total: -34.58 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.46 Total: -30.48 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.26 Total: 17.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.77 -8.29 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772343708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.249 kcal (2) G-P(sol) polarization free energy of solvation -34.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds