Wall clock time and date at job start Tue Mar 31 2020 17:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.39758 * 119.63805 * 2 1 4 4 C 1.38871 * 120.10319 * 346.39415 * 3 2 1 5 5 C 1.38084 * 119.98127 * 180.45656 * 4 3 2 6 6 C 1.38309 * 120.06124 * 359.56727 * 5 4 3 7 7 C 1.38258 * 120.10710 * 359.46127 * 6 5 4 8 8 C 1.38142 * 120.06981 * 0.27673 * 7 6 5 9 9 C 1.50706 * 119.94089 * 181.01924 * 8 7 6 10 10 H 1.08998 * 109.39755 * 332.93665 * 9 8 7 11 11 C 1.50696 * 109.43657 * 92.82908 * 9 8 7 12 12 O 1.20829 * 120.00229 * 0.21393 * 11 9 8 13 13 O 1.34229 * 120.00128 * 180.21808 * 11 9 8 14 14 C 1.45199 * 117.00078 * 174.64463 * 13 11 9 15 15 C 1.50694 * 112.85160 * 304.54529 * 14 13 11 16 16 H 1.08004 * 119.99881 * 133.72344 * 15 14 13 17 17 C 1.37880 * 120.00086 * 314.00472 * 15 14 13 18 18 N 1.31515 * 120.00177 * 171.73937 * 17 15 14 19 19 Si 1.86795 * 119.99990 * 351.72882 * 17 15 14 20 20 H 1.48503 * 109.47055 * 87.01260 * 19 17 15 21 21 H 1.48502 * 109.47470 * 207.01371 * 19 17 15 22 22 H 1.48507 * 109.47388 * 327.01161 * 19 17 15 23 23 C 1.53783 * 113.68892 * 75.81814 * 14 13 11 24 24 C 1.53773 * 87.08244 * 89.12448 * 23 14 13 25 25 C 1.53782 * 87.08357 * 25.43358 * 24 23 14 26 26 C 1.52889 * 109.68137 * 212.89525 * 9 8 7 27 27 C 1.34430 * 119.63598 * 180.02562 * 2 1 3 28 28 O 1.21284 * 119.71169 * 354.57128 * 27 2 1 29 29 H 1.09003 * 109.46987 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47184 * 299.97855 * 1 2 3 31 31 H 1.09005 * 109.47070 * 59.98418 * 1 2 3 32 32 H 1.07993 * 120.01083 * 0.44629 * 4 3 2 33 33 H 1.08006 * 119.96876 * 179.58927 * 5 4 3 34 34 H 1.07998 * 119.94767 * 179.48485 * 6 5 4 35 35 H 1.07997 * 119.96352 * 180.25731 * 7 6 5 36 36 H 0.96999 * 120.00048 * 180.02562 * 18 17 15 37 37 H 1.09000 * 113.60878 * 203.67320 * 23 14 13 38 38 H 1.08996 * 113.61423 * 334.57379 * 23 14 13 39 39 H 1.08996 * 113.61514 * 270.88271 * 24 23 14 40 40 H 1.09004 * 113.69255 * 139.99408 * 24 23 14 41 41 H 1.09000 * 113.61391 * 220.02145 * 25 24 23 42 42 H 1.08994 * 113.69023 * 89.12460 * 25 24 23 43 43 H 1.08995 * 109.43270 * 71.75524 * 26 9 8 44 44 H 1.09005 * 109.42545 * 191.64876 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1561 1.2147 0.0000 4 6 1.4856 2.3976 -0.2826 5 6 2.1729 3.5952 -0.2912 6 6 3.5268 3.6191 -0.0098 7 6 4.1933 2.4459 0.2917 8 6 3.5095 1.2457 0.3070 9 6 4.2338 -0.0283 0.6585 10 1 5.2886 0.0727 0.4029 11 6 4.0988 -0.2906 2.1363 12 8 3.4750 0.4760 2.8315 13 8 4.6716 -1.3757 2.6805 14 6 4.6030 -1.5028 4.1253 15 6 5.1663 -0.3050 4.8456 16 1 4.6223 0.1356 5.6680 17 6 6.3734 0.2319 4.4510 18 7 6.7878 1.3683 4.9671 19 14 7.4204 -0.6550 3.1835 20 1 7.0017 -0.2427 1.8197 21 1 8.8490 -0.3057 3.3895 22 1 7.2429 -2.1217 3.3336 23 6 3.2220 -1.9393 4.6422 24 6 3.7084 -3.3895 4.4845 25 6 5.1371 -2.8455 4.6516 26 6 3.6306 -1.1959 -0.1227 27 6 2.1297 -1.1684 -0.0005 28 8 1.5155 -2.2095 0.0987 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5141 -0.8899 32 1 0.4271 2.3808 -0.4958 33 1 1.6526 4.5142 -0.5175 34 1 4.0642 4.5557 -0.0251 35 1 5.2497 2.4678 0.5152 36 1 7.6368 1.7463 4.6893 37 1 3.0323 -1.6524 5.6765 38 1 2.4026 -1.6784 3.9724 39 1 3.5141 -3.8104 3.4980 40 1 3.3942 -4.0475 5.2948 41 1 5.8637 -3.3161 3.9893 42 1 5.4722 -2.8060 5.6880 43 1 3.9103 -1.1127 -1.1728 44 1 4.0091 -2.1355 0.2799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772343708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:40 Heat of formation + Delta-G solvation = -72.471967 kcal Electronic energy + Delta-G solvation = -30044.969359 eV Core-core repulsion = 26120.847783 eV Total energy + Delta-G solvation = -3924.121575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.62263 -41.32923 -39.84325 -38.99140 -36.67434 -36.26883 -35.64650 -34.56106 -31.33450 -30.61082 -29.20163 -28.72004 -26.63827 -26.28988 -24.61045 -23.97226 -23.24355 -22.23726 -20.37931 -19.89989 -19.30166 -18.76590 -18.11581 -17.97198 -17.31844 -17.17481 -16.90756 -16.26038 -16.15977 -15.89375 -15.56737 -15.43290 -15.09845 -14.83785 -14.71797 -14.59480 -13.95546 -13.85778 -13.71146 -13.43292 -13.36343 -13.26546 -13.20316 -13.09688 -12.96589 -12.31148 -12.18405 -12.11092 -12.00458 -11.85805 -11.74078 -11.36522 -11.28613 -11.14450 -11.11711 -10.58568 -10.44397 -9.87437 -8.98620 -8.37869 -6.44437 0.10244 0.31473 1.26907 1.29175 1.34995 1.38758 1.55181 1.67532 1.94747 2.31551 2.81809 2.96624 3.14296 3.29098 3.47343 3.68516 3.76520 3.83015 3.95662 4.05060 4.15357 4.20102 4.24844 4.28849 4.36681 4.44983 4.45339 4.53085 4.57346 4.71631 4.73845 4.76207 4.89748 4.92416 4.99697 5.05370 5.07342 5.23865 5.35832 5.47117 5.50683 5.51614 5.55341 5.77359 5.86469 6.14173 6.27873 6.55330 6.70765 7.03918 7.23835 8.77784 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.006205 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.526341 B = 4511.716871 C = 5704.238567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.555 5.555 3 C 0.159 3.841 4 C -0.153 4.153 5 C -0.078 4.078 6 C -0.143 4.143 7 C -0.087 4.087 8 C -0.127 4.127 9 C -0.044 4.044 10 H 0.138 0.862 11 C 0.452 3.548 12 O -0.504 6.504 13 O -0.356 6.356 14 C 0.179 3.821 15 C -0.515 4.515 16 H 0.029 0.971 17 C 0.027 3.973 18 N -0.933 5.933 19 Si 0.930 3.070 20 H -0.259 1.259 21 H -0.299 1.299 22 H -0.228 1.228 23 C -0.144 4.144 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.127 4.127 27 C 0.511 3.489 28 O -0.555 6.555 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.149 0.851 35 H 0.122 0.878 36 H 0.267 0.733 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.155 0.845 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.759 -0.494 -16.435 18.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.277 5.277 3 C 0.064 3.936 4 C -0.173 4.173 5 C -0.096 4.096 6 C -0.161 4.161 7 C -0.105 4.105 8 C -0.129 4.129 9 C -0.063 4.063 10 H 0.156 0.844 11 C 0.293 3.707 12 O -0.390 6.390 13 O -0.274 6.274 14 C 0.144 3.856 15 C -0.552 4.552 16 H 0.048 0.952 17 C -0.172 4.172 18 N -0.571 5.571 19 Si 0.754 3.246 20 H -0.184 1.184 21 H -0.226 1.226 22 H -0.151 1.151 23 C -0.182 4.182 24 C -0.158 4.158 25 C -0.156 4.156 26 C -0.166 4.166 27 C 0.302 3.698 28 O -0.433 6.433 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.174 0.826 33 H 0.183 0.817 34 H 0.167 0.833 35 H 0.140 0.860 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.173 0.827 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.237 -0.819 -16.105 18.108 hybrid contribution 0.677 0.344 0.466 0.891 sum -7.559 -0.475 -15.639 17.377 Atomic orbital electron populations 1.22081 0.76555 1.04918 1.04007 1.45370 1.08807 1.04488 1.69045 1.17771 0.90585 0.86167 0.99040 1.21112 1.01512 0.90321 1.04386 1.21412 0.93836 0.98214 0.96171 1.21407 0.95603 0.98032 1.01088 1.21050 1.00412 0.91870 0.97193 1.18976 0.93282 0.94499 1.06177 1.20092 1.04135 0.94407 0.87656 0.84443 1.23646 0.76572 0.79060 0.91390 1.90634 1.38357 1.46131 1.63859 1.86219 1.70749 1.43492 1.26920 1.21240 0.95350 0.94993 0.74011 1.21082 1.04524 1.13224 1.16385 0.95228 1.25813 0.98695 0.94594 0.98143 1.70098 1.22047 1.19273 1.45711 0.86039 0.76422 0.82238 0.79877 1.18379 1.22643 1.15055 1.23264 0.96515 0.97839 1.00567 1.22810 0.95446 0.94904 1.02590 1.23264 0.97317 0.93464 1.01549 1.21840 0.89710 0.99737 1.05328 1.20976 0.91422 0.82776 0.74617 1.90685 1.70501 1.32491 1.49617 0.89714 0.91099 0.87756 0.82575 0.81742 0.83331 0.85968 0.92429 0.90509 0.94406 0.89852 0.89116 0.90657 0.88630 0.82710 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 9.49 127.77 1.21 2.65 16 2 N -0.55 -16.08 3.08 -655.39 -2.02 -18.10 16 3 C 0.16 4.55 6.38 38.17 0.24 4.79 16 4 C -0.15 -3.36 9.31 22.38 0.21 -3.15 16 5 C -0.08 -1.54 10.04 22.25 0.22 -1.31 16 6 C -0.14 -3.33 10.04 22.29 0.22 -3.11 16 7 C -0.09 -2.57 9.68 22.25 0.22 -2.36 16 8 C -0.13 -4.05 4.16 -19.75 -0.08 -4.13 16 9 C -0.04 -1.48 2.84 -12.32 -0.04 -1.52 16 10 H 0.14 4.21 7.48 -2.39 -0.02 4.19 16 11 C 0.45 20.43 5.65 71.23 0.40 20.83 16 12 O -0.50 -26.87 14.35 21.96 0.32 -26.56 16 13 O -0.36 -16.31 7.17 -51.41 -0.37 -16.68 16 14 C 0.18 8.69 0.12 -11.01 0.00 8.69 16 15 C -0.51 -30.32 7.53 25.60 0.19 -30.13 16 16 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 17 C 0.03 1.59 5.33 84.66 0.45 2.04 16 18 N -0.93 -58.74 13.96 21.45 0.30 -58.44 16 19 Si 0.93 43.83 25.07 68.60 1.72 45.55 16 20 H -0.26 -11.15 6.52 99.48 0.65 -10.50 16 21 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 22 H -0.23 -9.78 5.28 99.48 0.53 -9.25 16 23 C -0.14 -6.39 7.04 31.12 0.22 -6.17 16 24 C -0.12 -4.26 8.03 31.12 0.25 -4.01 16 25 C -0.12 -4.78 6.55 31.12 0.20 -4.57 16 26 C -0.13 -3.56 5.52 29.78 0.16 -3.39 16 27 C 0.51 16.59 7.10 87.68 0.62 17.21 16 28 O -0.55 -20.70 16.36 -3.04 -0.05 -20.75 16 29 H 0.08 2.05 6.86 -2.39 -0.02 2.03 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 1.52 7.43 -2.38 -0.02 1.50 16 32 H 0.16 2.42 6.63 -2.91 -0.02 2.40 16 33 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 34 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.12 3.64 8.06 -2.91 -0.02 3.61 16 36 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 37 H 0.08 3.45 8.09 -2.39 -0.02 3.43 16 38 H 0.04 1.75 7.92 -2.39 -0.02 1.73 16 39 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 41 H 0.07 2.85 6.75 -2.39 -0.02 2.83 16 42 H 0.10 3.81 8.09 -2.39 -0.02 3.79 16 43 H 0.16 2.98 8.14 -2.39 -0.02 2.96 16 44 H 0.12 3.41 7.82 -2.38 -0.02 3.40 16 Total: -1.00 -80.77 353.90 5.39 -75.38 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.78 Total: 27.23 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 4.72 Total: -7.64 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -1.72 Total: -76.54 kcal Atomic # 8 Polarization: -63.88 SS G_CDS: -0.10 Total: -63.98 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.72 Total: 45.55 kcal Total: -80.77 5.39 -75.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772343708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.910 kcal (2) G-P(sol) polarization free energy of solvation -80.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds