Wall clock time and date at job start Tue Mar 31 2020 15:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99823 * 2 1 4 4 H 1.48496 * 109.47097 * 264.98683 * 3 2 1 5 5 H 1.48507 * 109.47357 * 144.98963 * 3 2 1 6 6 H 1.48499 * 109.47352 * 24.98811 * 3 2 1 7 7 C 1.38809 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 187.31886 * 7 2 1 9 9 N 1.36941 * 120.00409 * 7.32909 * 7 2 1 10 10 C 1.47025 * 125.64343 * 5.85194 * 9 7 2 11 11 C 1.54317 * 107.27002 * 181.02591 * 10 9 7 12 12 C 1.55159 * 102.94199 * 22.19766 * 11 10 9 13 13 H 1.09002 * 111.00520 * 82.57027 * 12 11 10 14 14 N 1.46497 * 111.00165 * 206.38584 * 12 11 10 15 15 C 1.34787 * 119.99713 * 205.00038 * 14 12 11 16 16 O 1.21277 * 120.00155 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99746 * 179.97438 * 15 14 12 18 18 C 1.53002 * 109.46850 * 179.97438 * 17 15 14 19 19 H 1.08998 * 110.07611 * 304.89603 * 18 17 15 20 20 N 1.46730 * 110.09698 * 66.45375 * 18 17 15 21 21 C 1.34428 * 108.75086 * 119.19675 * 20 18 17 22 22 O 1.21549 * 124.85566 * 180.02562 * 21 20 18 23 23 C 1.47543 * 110.28554 * 359.97438 * 21 20 18 24 24 C 1.39625 * 132.34278 * 180.02562 * 23 21 20 25 25 C 1.37941 * 119.82820 * 179.97438 * 24 23 21 26 26 C 1.38388 * 120.32009 * 0.02562 * 25 24 23 27 27 C 1.38473 * 120.18759 * 0.02562 * 26 25 24 28 28 C 1.37577 * 119.95828 * 359.97438 * 27 26 25 29 29 C 1.47420 * 125.65328 * 185.55417 * 9 7 2 30 30 H 0.97001 * 120.00005 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.88454 * 300.45147 * 10 9 7 32 32 H 1.09003 * 109.87921 * 61.45867 * 10 9 7 33 33 H 1.09007 * 110.72083 * 140.56150 * 11 10 9 34 34 H 1.09005 * 110.72296 * 263.65477 * 11 10 9 35 35 H 0.97002 * 120.00731 * 24.99975 * 14 12 11 36 36 H 1.08997 * 109.47468 * 299.99686 * 17 15 14 37 37 H 1.09004 * 109.47128 * 60.00089 * 17 15 14 38 38 H 0.96995 * 125.62866 * 299.22124 * 20 18 17 39 39 H 1.07998 * 120.08778 * 0.02562 * 24 23 21 40 40 H 1.07999 * 119.84251 * 180.02562 * 25 24 23 41 41 H 1.07995 * 119.90410 * 179.97438 * 26 25 24 42 42 H 1.08000 * 120.02055 * 180.02562 * 27 26 25 43 43 H 1.09005 * 110.36516 * 274.74378 * 29 9 7 44 44 H 1.09001 * 110.36560 * 37.06376 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6036 1.9852 -1.3947 5 1 3.4908 1.4731 0.8033 6 1 1.3987 2.6809 0.5914 7 6 2.0103 -1.2021 0.0005 8 1 3.0837 -1.2058 0.1197 9 7 1.3341 -2.3833 -0.1502 10 6 -0.1007 -2.5181 -0.4415 11 6 -0.4173 -4.0274 -0.4967 12 6 0.7391 -4.6553 0.3256 13 1 0.5289 -4.6086 1.3941 14 7 0.9950 -6.0345 -0.0967 15 6 1.5610 -6.9076 0.7601 16 8 1.8589 -6.5512 1.8804 17 6 1.8237 -8.3266 0.3259 18 6 2.4675 -9.1013 1.4775 19 1 3.3649 -8.5859 1.8197 20 7 1.5147 -9.2437 2.5843 21 6 1.2943 -10.5522 2.7992 22 8 0.5516 -11.0010 3.6503 23 6 2.0820 -11.3657 1.8533 24 6 2.1997 -12.7449 1.6704 25 6 3.0295 -13.2381 0.6851 26 6 3.7462 -12.3725 -0.1226 27 6 3.6355 -11.0035 0.0533 28 6 2.8107 -10.5012 1.0332 29 6 1.9253 -3.7303 -0.0535 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6852 -2.0452 0.3478 32 1 -0.3294 -2.0537 -1.4007 33 1 -1.3801 -4.2369 -0.0304 34 1 -0.4022 -4.3873 -1.5255 35 1 0.7571 -6.3195 -0.9929 36 1 0.8828 -8.8019 0.0490 37 1 2.4965 -8.3255 -0.5317 38 1 1.1103 -8.5140 3.0790 39 1 1.6418 -13.4238 2.2983 40 1 3.1204 -14.3049 0.5432 41 1 4.3942 -12.7660 -0.8917 42 1 4.1957 -10.3305 -0.5788 43 1 2.3501 -4.0279 -1.0123 44 1 2.6884 -3.7547 0.7244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015883258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:14 Heat of formation + Delta-G solvation = -5.453424 kcal Electronic energy + Delta-G solvation = -27098.676734 eV Core-core repulsion = 23209.754052 eV Total energy + Delta-G solvation = -3888.922682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61876 -39.69003 -38.29970 -37.42799 -36.27038 -34.12065 -32.23638 -31.75645 -30.97726 -30.52303 -29.16307 -27.21588 -25.18528 -24.26740 -24.14539 -21.77817 -20.99001 -20.49798 -20.34483 -19.92752 -17.65261 -17.36965 -17.04632 -16.85730 -16.29299 -16.16939 -15.62519 -15.09185 -14.86067 -14.66943 -14.54497 -14.19509 -13.99909 -13.89642 -13.45261 -13.11419 -12.89977 -12.85441 -12.51394 -12.40600 -12.25385 -11.99977 -11.87111 -11.44822 -11.09298 -10.91140 -10.80325 -10.41229 -10.18915 -10.13851 -9.99806 -9.86191 -9.72655 -9.64799 -9.39535 -9.17550 -8.85302 -8.65618 -6.87582 -5.73551 -3.10452 0.38658 0.84066 2.50802 2.59657 2.97047 3.13812 3.39016 3.43928 3.45312 3.45919 3.72596 4.03285 4.34260 4.47360 4.49371 4.56274 4.72330 4.83335 4.92591 4.99243 5.14407 5.21584 5.24226 5.38726 5.43578 5.50051 5.55373 5.67741 5.73126 5.79470 5.86262 5.94654 6.10848 6.25270 6.35656 6.36095 6.49192 6.55317 6.62111 6.82051 6.88241 7.38376 7.56465 7.59573 7.77236 8.00954 8.20475 8.25028 9.16892 9.77716 10.42196 11.35892 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.026846 B = 0.002169 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.751144 B =12903.255400 C =13224.183363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.172 3.828 11 C -0.148 4.148 12 C 0.126 3.874 13 H 0.098 0.902 14 N -0.713 5.713 15 C 0.511 3.489 16 O -0.541 6.541 17 C -0.148 4.148 18 C 0.188 3.812 19 H 0.114 0.886 20 N -0.705 5.705 21 C 0.557 3.443 22 O -0.530 6.530 23 C -0.154 4.154 24 C -0.048 4.048 25 C -0.127 4.127 26 C -0.089 4.089 27 C -0.100 4.100 28 C -0.078 4.078 29 C 0.130 3.870 30 H 0.253 0.747 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.398 0.602 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.432 0.568 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.019 0.981 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.221 -26.109 -4.235 26.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.047 3.953 11 C -0.187 4.187 12 C 0.021 3.979 13 H 0.116 0.884 14 N -0.363 5.363 15 C 0.297 3.703 16 O -0.419 6.419 17 C -0.188 4.188 18 C 0.081 3.919 19 H 0.131 0.869 20 N -0.363 5.363 21 C 0.344 3.656 22 O -0.408 6.408 23 C -0.157 4.157 24 C -0.067 4.067 25 C -0.145 4.145 26 C -0.107 4.107 27 C -0.118 4.118 28 C -0.080 4.080 29 C 0.002 3.998 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.232 0.768 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.276 0.724 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.037 0.963 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.997 -25.862 -2.973 26.508 hybrid contribution 0.170 1.148 -0.436 1.240 sum 5.167 -24.714 -3.409 25.478 Atomic orbital electron populations 1.69933 1.04939 1.25181 1.56718 1.24826 0.95708 0.97793 1.02110 0.86113 0.78613 0.83252 0.77646 1.21553 1.20661 1.21661 1.19043 0.90936 0.82479 1.43292 0.90416 1.44390 1.05146 0.99801 1.83559 1.21234 0.85678 0.87819 1.00598 1.23149 0.97082 0.99870 0.98620 1.22412 0.96896 0.78557 1.00047 0.88386 1.46027 1.62204 1.11701 1.16369 1.20424 0.77452 0.86891 0.85535 1.90721 1.51576 1.79323 1.20230 1.22049 1.04069 0.93260 0.99472 1.19757 0.93519 0.92002 0.86611 0.86886 1.45980 1.46383 1.07864 1.36034 1.18321 0.81138 0.82980 0.83126 1.90811 1.38502 1.75879 1.35603 1.20493 1.01099 0.94565 0.99581 1.20898 0.96271 0.93099 0.96422 1.21166 0.97149 1.00384 0.95776 1.21352 0.98019 0.92798 0.98540 1.20362 0.98456 0.95570 0.97416 1.20426 0.96770 0.94658 0.96112 1.21868 0.94149 0.86160 0.97604 0.93673 0.91568 0.94964 0.91588 0.92137 0.76785 0.88007 0.87043 0.72386 0.84991 0.84970 0.84868 0.84853 0.96295 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 10.45 55.49 0.58 -26.22 16 2 C -0.01 -0.22 5.45 -17.43 -0.09 -0.32 16 3 Si 0.91 22.04 29.56 -169.99 -5.02 17.02 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.39 10.26 -15.06 -0.15 -6.54 16 8 H 0.08 2.10 7.84 -52.48 -0.41 1.69 16 9 N -0.60 -15.22 3.39 -169.94 -0.58 -15.80 16 10 C 0.17 4.02 5.45 -3.07 -0.02 4.01 16 11 C -0.15 -2.54 6.59 -24.90 -0.16 -2.70 16 12 C 0.13 2.14 3.44 -65.67 -0.23 1.91 16 13 H 0.10 1.89 7.54 -51.93 -0.39 1.49 16 14 N -0.71 -8.76 5.20 -51.62 -0.27 -9.03 16 15 C 0.51 6.18 7.71 -10.98 -0.08 6.10 16 16 O -0.54 -8.61 14.48 5.56 0.08 -8.53 16 17 C -0.15 -1.15 5.41 -27.88 -0.15 -1.30 16 18 C 0.19 1.70 3.06 -68.90 -0.21 1.49 16 19 H 0.11 1.05 7.98 -51.93 -0.41 0.63 16 20 N -0.71 -8.09 5.70 -55.86 -0.32 -8.41 16 21 C 0.56 7.24 8.34 -12.62 -0.11 7.14 16 22 O -0.53 -8.79 18.04 5.32 0.10 -8.69 16 23 C -0.15 -1.57 6.26 -105.05 -0.66 -2.23 16 24 C -0.05 -0.39 10.10 -39.17 -0.40 -0.79 16 25 C -0.13 -0.74 10.02 -39.63 -0.40 -1.14 16 26 C -0.09 -0.45 10.05 -39.44 -0.40 -0.85 16 27 C -0.10 -0.59 10.03 -39.74 -0.40 -0.99 16 28 C -0.08 -0.64 5.67 -104.27 -0.59 -1.23 16 29 C 0.13 2.66 6.94 -2.42 -0.02 2.64 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.07 1.75 6.88 -51.93 -0.36 1.39 16 32 H 0.03 0.82 7.97 -51.93 -0.41 0.40 16 33 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 34 H 0.06 0.90 8.01 -51.93 -0.42 0.49 16 35 H 0.40 3.66 8.57 -40.82 -0.35 3.31 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.43 5.32 8.00 -40.82 -0.33 4.99 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.13 0.34 8.06 -52.49 -0.42 -0.08 16 42 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -35.04 366.99 -9.98 -45.03 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.02 Total: 3.90 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -4.06 Total: 5.20 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.58 Total: -59.45 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.18 Total: -17.22 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.04 -9.98 -45.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015883258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.572 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds