Wall clock time and date at job start Tue Mar 31 2020 15:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99770 * 2 1 4 4 H 1.48507 * 109.46933 * 264.67557 * 3 2 1 5 5 H 1.48498 * 109.47130 * 24.67740 * 3 2 1 6 6 H 1.48499 * 109.46689 * 144.67729 * 3 2 1 7 7 C 1.38808 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99851 * 336.33832 * 7 2 1 9 9 N 1.36937 * 120.00145 * 156.33136 * 7 2 1 10 10 C 1.47745 * 125.82305 * 161.93334 * 9 7 2 11 11 C 1.54912 * 104.83888 * 155.83434 * 10 9 7 12 12 H 1.09004 * 111.03420 * 155.18698 * 11 10 9 13 13 O 1.42901 * 111.00454 * 279.01830 * 11 10 9 14 14 C 1.55158 * 101.58257 * 37.09723 * 11 10 9 15 15 H 1.08997 * 110.87335 * 82.93480 * 14 11 10 16 16 C 1.53000 * 110.71746 * 206.13515 * 14 11 10 17 17 N 1.46500 * 109.47093 * 179.97438 * 16 14 11 18 18 C 1.34775 * 120.00052 * 180.02562 * 17 16 14 19 19 O 1.21775 * 120.00354 * 359.97438 * 18 17 16 20 20 C 1.46213 * 119.99901 * 179.97438 * 18 17 16 21 21 C 1.41739 * 126.79638 * 0.02562 * 20 18 17 22 22 C 1.34526 * 107.77094 * 179.97438 * 21 20 18 23 23 N 1.36947 * 109.60453 * 0.02562 * 22 21 20 24 24 C 1.36709 * 131.34794 * 180.02562 * 23 22 21 25 25 C 1.34996 * 120.75300 * 179.97438 * 24 23 22 26 26 C 1.40306 * 120.38339 * 359.97438 * 25 24 23 27 27 C 1.36341 * 119.45730 * 0.03214 * 26 25 24 28 28 C 1.36940 * 108.74266 * 359.74695 * 23 22 21 29 29 C 1.47025 * 125.65003 * 342.03398 * 9 7 2 30 30 H 0.97001 * 119.99918 * 359.97438 * 1 2 3 31 31 H 1.08996 * 110.28824 * 37.03002 * 10 9 7 32 32 H 1.09003 * 110.52600 * 274.75947 * 10 9 7 33 33 H 0.96698 * 114.00101 * 292.19737 * 13 11 10 34 34 H 1.09009 * 109.46940 * 299.97211 * 16 14 11 35 35 H 1.08992 * 109.47386 * 59.97410 * 16 14 11 36 36 H 0.97006 * 119.99882 * 359.97438 * 17 16 14 37 37 H 1.07998 * 126.11589 * 0.02562 * 21 20 18 38 38 H 1.07996 * 125.19456 * 179.97438 * 22 21 20 39 39 H 1.07994 * 119.62142 * 359.96795 * 24 23 22 40 40 H 1.08001 * 119.80922 * 180.02562 * 25 24 23 41 41 H 1.07997 * 120.27027 * 180.02562 * 26 25 24 42 42 H 1.07998 * 120.33810 * 179.97438 * 27 26 25 43 43 H 1.09006 * 109.88201 * 61.59845 * 29 9 7 44 44 H 1.09011 * 109.87883 * 300.59589 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6102 1.9815 -1.3941 5 1 1.3959 2.6826 0.5845 6 1 3.4869 1.4753 0.8095 7 6 2.0103 -1.2021 -0.0005 8 1 1.5384 -2.0982 0.3744 9 7 3.2933 -1.2518 -0.4766 10 6 4.2741 -2.3238 -0.2089 11 6 5.2657 -2.2601 -1.3973 12 1 6.2363 -2.6711 -1.1194 13 8 4.7370 -2.9321 -2.5422 14 6 5.3590 -0.7310 -1.6436 15 1 6.0753 -0.2710 -0.9629 16 6 5.7330 -0.4389 -3.0981 17 7 5.8129 1.0099 -3.3003 18 6 6.1292 1.5046 -4.5134 19 8 6.3491 0.7474 -5.4414 20 6 6.2084 2.9506 -4.7152 21 6 5.9827 3.9571 -3.7431 22 6 6.1571 5.1503 -4.3395 23 7 6.4853 4.9626 -5.6557 24 6 6.7559 5.8552 -6.6552 25 6 7.0614 5.4274 -7.8986 26 6 7.1068 4.0548 -8.1857 27 6 6.8390 3.1540 -7.1980 28 6 6.5287 3.6178 -5.9109 29 6 3.9266 -0.2440 -1.3397 30 1 -0.4850 0.8401 0.0004 31 1 3.7764 -3.2931 -0.1815 32 1 4.7953 -2.1390 0.7305 33 1 4.6601 -3.8901 -2.4354 34 1 6.6992 -0.8909 -3.3226 35 1 4.9740 -0.8567 -3.7594 36 1 5.6374 1.6131 -2.5611 37 1 5.7188 3.7951 -2.7085 38 1 6.0531 6.1096 -3.8545 39 1 6.7247 6.9145 -6.4477 40 1 7.2729 6.1459 -8.6767 41 1 7.3518 3.7146 -9.1810 42 1 6.8695 2.0941 -7.4034 43 1 3.9629 0.7157 -0.8241 44 1 3.3640 -0.1448 -2.2681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958248607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:38 Heat of formation + Delta-G solvation = 30.987992 kcal Electronic energy + Delta-G solvation = -27780.134625 eV Core-core repulsion = 23892.792161 eV Total energy + Delta-G solvation = -3887.342464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.46456 -39.38073 -38.36409 -36.78461 -35.06192 -34.48891 -33.17837 -32.13011 -30.62458 -29.96598 -28.41899 -27.92283 -25.70129 -24.02068 -23.78060 -22.59493 -21.66696 -20.67220 -20.14697 -19.67402 -18.05131 -17.21956 -16.95211 -16.77102 -16.18692 -15.79541 -15.75132 -15.52818 -15.33491 -14.65503 -14.57741 -14.15319 -13.92164 -13.70070 -13.40253 -13.30088 -13.11440 -12.89355 -12.62723 -12.11046 -11.98124 -11.86923 -11.60603 -11.54596 -11.48653 -11.16968 -10.85057 -10.70374 -10.54117 -10.33077 -9.97150 -9.67299 -9.56751 -9.31317 -8.92591 -8.75976 -8.58080 -7.56074 -7.03349 -5.93237 -3.21258 0.50321 0.99756 2.23340 2.38508 3.11970 3.35199 3.44127 3.49888 3.51744 3.76328 4.20135 4.47284 4.51428 4.55178 4.56679 4.68621 4.83766 4.86803 4.99127 5.10158 5.15000 5.20302 5.26478 5.46145 5.46625 5.55816 5.59099 5.68462 5.76507 5.87981 5.93159 6.04781 6.09504 6.20020 6.22249 6.40354 6.47828 6.50322 6.58547 6.63437 6.74846 6.82518 6.97380 7.69833 7.79923 8.03209 8.32274 8.53259 8.84156 9.70472 10.18908 11.23344 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014783 B = 0.003345 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.644188 B = 8368.747317 C = 9682.797897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.021 3.979 3 Si 0.886 3.114 4 H -0.283 1.283 5 H -0.304 1.304 6 H -0.280 1.280 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.603 5.603 10 C 0.104 3.896 11 C 0.099 3.901 12 H 0.065 0.935 13 O -0.550 6.550 14 C -0.109 4.109 15 H 0.089 0.911 16 C 0.143 3.857 17 N -0.725 5.725 18 C 0.592 3.408 19 O -0.556 6.556 20 C -0.237 4.237 21 C -0.105 4.105 22 C -0.064 4.064 23 N -0.339 5.339 24 C 0.046 3.954 25 C -0.143 4.143 26 C -0.121 4.121 27 C -0.077 4.077 28 C 0.111 3.889 29 C 0.129 3.871 30 H 0.263 0.737 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.375 0.625 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.398 0.602 37 H 0.154 0.846 38 H 0.174 0.826 39 H 0.163 0.837 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.157 0.843 43 H 0.022 0.978 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.112 10.059 -11.767 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.718 3.282 4 H -0.211 1.211 5 H -0.233 1.233 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.109 0.891 9 N -0.330 5.330 10 C -0.022 4.022 11 C 0.038 3.962 12 H 0.083 0.917 13 O -0.355 6.355 14 C -0.128 4.128 15 H 0.108 0.892 16 C 0.020 3.980 17 N -0.375 5.375 18 C 0.381 3.619 19 O -0.437 6.437 20 C -0.247 4.247 21 C -0.127 4.127 22 C -0.189 4.189 23 N -0.003 5.003 24 C -0.075 4.075 25 C -0.163 4.163 26 C -0.143 4.143 27 C -0.096 4.096 28 C 0.001 3.999 29 C 0.004 3.996 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.221 0.779 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.232 0.768 37 H 0.171 0.829 38 H 0.191 0.809 39 H 0.180 0.820 40 H 0.165 0.835 41 H 0.155 0.845 42 H 0.174 0.826 43 H 0.039 0.961 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.996 10.443 -12.647 24.348 hybrid contribution 0.228 0.974 0.876 1.330 sum 18.224 11.417 -11.771 24.515 Atomic orbital electron populations 1.69865 1.05541 1.26546 1.53041 1.24950 0.95145 0.97418 1.00271 0.86886 0.78870 0.84837 0.77646 1.21076 1.23278 1.20687 1.18626 0.85178 0.95560 1.37387 0.89090 1.44689 1.10694 1.22201 1.55397 1.22366 0.91115 0.93909 0.94800 1.22853 0.95097 0.91542 0.86661 0.91750 1.86517 1.87255 1.23779 1.37919 1.22542 0.98792 0.95239 0.96225 0.89233 1.21154 1.01914 0.79233 0.95744 1.45823 1.71365 1.08551 1.11771 1.16941 0.76223 0.86333 0.82420 1.90756 1.51537 1.59986 1.41373 1.19405 1.18843 0.93155 0.93247 1.21108 1.01005 0.91073 0.99478 1.21677 1.14935 1.00622 0.81654 1.41536 1.43405 1.06483 1.08885 1.21681 1.02799 0.95188 0.87815 1.20780 1.02962 0.97032 0.95551 1.21131 1.00653 0.92463 1.00010 1.20920 0.97322 1.02054 0.89295 1.18635 1.04132 0.81964 0.95142 1.21674 0.90521 0.92508 0.94852 0.92745 0.92874 0.95015 0.77852 0.91607 0.89950 0.76800 0.82892 0.80890 0.81967 0.83529 0.84457 0.82591 0.96054 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.43 13.97 55.49 0.78 -27.65 16 2 C 0.02 0.62 5.43 -17.43 -0.09 0.52 16 3 Si 0.89 22.73 24.39 -169.99 -4.15 18.58 16 4 H -0.28 -7.02 6.84 56.52 0.39 -6.63 16 5 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 6 H -0.28 -6.95 6.87 56.52 0.39 -6.56 16 7 C -0.24 -6.93 10.58 -15.06 -0.16 -7.09 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.60 -14.72 3.22 -169.81 -0.55 -15.27 16 10 C 0.10 1.98 6.99 -2.35 -0.02 1.96 16 11 C 0.10 1.56 4.17 -24.58 -0.10 1.46 16 12 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 13 O -0.55 -8.87 12.22 -35.23 -0.43 -9.30 16 14 C -0.11 -1.84 2.95 -88.79 -0.26 -2.10 16 15 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 16 C 0.14 2.38 4.59 -4.04 -0.02 2.37 16 17 N -0.72 -11.68 5.39 -61.76 -0.33 -12.01 16 18 C 0.59 10.17 7.77 -13.06 -0.10 10.07 16 19 O -0.56 -10.91 15.66 5.12 0.08 -10.83 16 20 C -0.24 -3.58 6.20 -104.46 -0.65 -4.22 16 21 C -0.11 -1.31 10.27 -39.56 -0.41 -1.72 16 22 C -0.06 -0.68 11.53 -16.58 -0.19 -0.87 16 23 N -0.34 -3.80 2.92 -60.81 -0.18 -3.98 16 24 C 0.05 0.37 10.89 -16.53 -0.18 0.19 16 25 C -0.14 -1.02 9.98 -39.96 -0.40 -1.42 16 26 C -0.12 -1.07 10.09 -39.49 -0.40 -1.47 16 27 C -0.08 -0.94 9.72 -39.49 -0.38 -1.32 16 28 C 0.11 1.52 6.70 -83.91 -0.56 0.96 16 29 C 0.13 2.86 4.43 -3.07 -0.01 2.84 16 30 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.37 4.34 9.12 45.56 0.42 4.75 16 34 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 35 H 0.08 1.60 7.44 -51.93 -0.39 1.21 16 36 H 0.40 5.83 7.29 -40.82 -0.30 5.53 16 37 H 0.15 1.64 7.53 -52.49 -0.40 1.24 16 38 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 39 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 41 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.16 2.02 7.07 -52.49 -0.37 1.65 16 43 H 0.02 0.50 3.52 -51.93 -0.18 0.32 16 44 H 0.05 1.13 7.76 -51.92 -0.40 0.73 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -37.76 359.89 -8.30 -46.06 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.01 Total: 8.82 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -3.94 Total: 0.15 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.28 Total: -58.91 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.35 Total: -20.13 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.15 Total: 18.58 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.76 -8.30 -46.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958248607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.048 kcal (2) G-P(sol) polarization free energy of solvation -37.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds